RLG00000036561

Plant protein of unknown function (DUF868)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0017083
Physical Location & Seq
Forward (+)
81974411 .. 81975325
915 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036561

Sequence Viewer

Length: 915 bp
ATGTCTAATCATCTTCTTGGATCCATACCCTTTTCGATTTCAAAACCACCATCCAACGAGAATGTTTGCCAGGTACAGGAAAGTGAAGATAAGGCAGCTCCACAGAACTCTGTGACGTATGTCTATCAAGCTAAACTAGCCGGATTGTGCTGCAATGTCACAGCAACATGGGGCAAAGACCTCAAAAATCATTTCCTTTACATCGAAGTGGCAAAGCCTTGTCAAGAAGCTCTATACATTTGCAAGATTGATTTAAATTCTTGTCAATTGTGGGGCAAGAAAGGTCTCAAATCCTTCGACATAAATGGAAGACGAGTAGATGTTTACTGGGATTTTCGACAGGCAAAATTCTCTGGCAACCCGGTGCCATGTTCGGATTACTATGTTGCCTTGGTGTCCAAGGCAGAGGTGGTTTTACTGCTAGGGGATCTAGTGACAGATGCTTATAAGAGAACCAGATCAAAACCGGCTTTAGAAGAGGCTACATTGATGTACAAGAAGGAAGTTGTGTGTGGAAAAAGACTGTTTTGCTCCAAAGCCATGTTGGAAGGAGGGAGAGAAGAGCATGACATTGTCATTGAAGCTTCACTATCAGGGCCTAATGATCCTGAAATGTGGATTACTGTAGACGGGACAATGACGATTCGGATCATGAACTTGAATTGGAGATTTAGAGGGAATGAGAGTGTGATGTTGAATGATTTTCCAGTTGAAATTTTCTGGGATGTGTATGATTGGTTGTTTAGTAAACAAGCCACAGGCCAAGGCTTGTTCATTTTCAAGCCAGGCAGGCTTGATTGGGAGTCTAGTCATAGTGACCCCTCAGGTAGTAGAAATTCTGAATACAACTCACCAAAAGAGAGCTCATCAACTATAGAGTTTTGCCATTTTCTTTATGCGTGGAAAACTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF868

Protein Analysis

305

Amino Acids

34.54

Weight (kDa)

5.84

Isoelectric Point (pI)

36.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF868 PF05910 34 - 302 9.5e-92 Plant protein of unknown function (DUF868)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017083)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13229
fragaria_vesca FvH4_3g42170
malus_domestica MD03G1037200.v1.1 MD11G1038300.v1.1
pyrus_communis pycom03g02860
rosa_chinensis RchiOBHm_Chr5g0075431 RchiOBHm_Chr5g0075441
rosa_laevigata RLG00000036561
rosa_multiflora Rmu_sc0000770.1_g000016
rosa_rugosa Rorug05G0439500
rosa_samantha Rh5BG517800 Rh5CG541400
rosa_wichuraiana Rw5G046040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 447
AccB1I GGYRCC 1 cut(s) 364
AccI GTMKAC 1 cut(s) 627
AclWI GGATC 5 cut(s) 15, 28, 435, 599, 656
AcsI RAATTY 4 cut(s) 256, 347, 714, 835
AfaI GTAC 2 cut(s) 75, 494
AfiI CCNNNNNNNGG 1 cut(s) 76
AgsI TTSAA 6 cut(s) 42, 581, 661, 697, 713, 781
AjnI CCWGG 2 cut(s) 69, 784
AluBI AGCT 5 cut(s) 98, 131, 230, 584, 864
AluI AGCT 5 cut(s) 98, 131, 230, 584, 864
Alw21I GWGCWC 1 cut(s) 866
Alw26I GTCTC 1 cut(s) 290
AlwI GGATC 5 cut(s) 15, 28, 435, 599, 656
AoxI GGCC 2 cut(s) 596, 760
ApeKI GCWGC 2 cut(s) 95, 150
ApoI RAATTY 4 cut(s) 256, 347, 714, 835
AspS9I GGNCC 1 cut(s) 596
AsuC2I CCSGG 1 cut(s) 362
AsuHPI GGTGA 1 cut(s) 843
AxyI CCTNAGG 1 cut(s) 823
BamHI GGATCC 1 cut(s) 20
BanI GGYRCC 1 cut(s) 364
BanII GRGCYC 1 cut(s) 866
BbsI GAAGAC 1 cut(s) 316
Bbv12I GWGCWC 1 cut(s) 866
BbvI GCAGC 2 cut(s) 107, 137
BccI CCATC 1 cut(s) 58
BciT130I CCWGG 2 cut(s) 71, 786
BcnI CCSGG 1 cut(s) 362
BcoDI GTCTC 1 cut(s) 290
BfaI CTAG 4 cut(s) 137, 422, 431, 807
BfmI CTRYAG 2 cut(s) 624, 873
BglI GCCNNNNNGGC 1 cut(s) 790
BisI GCNGC 2 cut(s) 96, 151
BlsI GCNGC 2 cut(s) 97, 152
Bme1390I CCNGG 3 cut(s) 71, 362, 786
BmgT120I GGNCC 1 cut(s) 596
BmiI GGNNCC 2 cut(s) 22, 366
BmrFI CCNGG 3 cut(s) 71, 362, 786
BmrI ACTGGG 1 cut(s) 337
BmsI GCATC 1 cut(s) 430
BmuI ACTGGG 1 cut(s) 337
BoxI GACNNNNGTC 1 cut(s) 119
BpiI GAAGAC 1 cut(s) 316
BpuMI CCSGG 1 cut(s) 362
BsaBI GATNNNNATC 1 cut(s) 647
BsaI GGTCTC 1 cut(s) 290
BsaJI CCNNGG 3 cut(s) 390, 399, 763
Bsc4I CCNNNNNNNGG 1 cut(s) 76
Bse118I RCCGGY 1 cut(s) 466
Bse1I ACTGG 2 cut(s) 332, 707
Bse21I CCTNAGG 1 cut(s) 823
Bse3DI GCAATG 1 cut(s) 160
Bse8I GATNNNNATC 1 cut(s) 647
BseBI CCWGG 2 cut(s) 71, 786
BseDI CCNNGG 3 cut(s) 390, 399, 763
BseGI GGATG 2 cut(s) 50, 730
BseJI GATNNNNATC 1 cut(s) 647
BseLI CCNNNNNNNGG 1 cut(s) 76
BseMI GCAATG 1 cut(s) 160
BseMII CTCAG 2 cut(s) 837, 900
BseNI ACTGG 2 cut(s) 332, 707
BseXI GCAGC 2 cut(s) 107, 137
BshFI GGCC 2 cut(s) 598, 762
BshNI GGYRCC 1 cut(s) 364
BsiHKAI GWGCWC 1 cut(s) 866
BsiSI CCGG 3 cut(s) 141, 362, 467
BslFI GGGAC 1 cut(s) 646
BslI CCNNNNNNNGG 1 cut(s) 76
BsmAI GTCTC 1 cut(s) 290
BsmFI GGGAC 1 cut(s) 646
BsnI GGCC 2 cut(s) 598, 762
Bso31I GGTCTC 1 cut(s) 290
Bsp1286I GDGCHC 1 cut(s) 866
Bsp1407I TGTACA 1 cut(s) 492
Bsp143I GATC 5 cut(s) 20, 427, 458, 604, 648
BspANI GGCC 2 cut(s) 598, 762
BspCNI CTCAG 2 cut(s) 836, 901
BspHI TCATGA 1 cut(s) 651
BspLI GGNNCC 2 cut(s) 22, 366
BspPI GGATC 5 cut(s) 15, 28, 435, 599, 656
BspQI GCTCTTC 1 cut(s) 555
BspT107I GGYRCC 1 cut(s) 364
BspTNI GGTCTC 1 cut(s) 290
BsrDI GCAATG 1 cut(s) 160
BsrFI RCCGGY 1 cut(s) 466
BsrGI TGTACA 1 cut(s) 492
BsrI ACTGG 2 cut(s) 332, 707
BssAI RCCGGY 1 cut(s) 466
BssECI CCNNGG 3 cut(s) 390, 399, 763
BssMI GATC 5 cut(s) 20, 427, 458, 604, 648
BssT1I CCWWGG 3 cut(s) 390, 399, 763
Bst2UI CCWGG 2 cut(s) 71, 786
Bst4CI ACNGT 2 cut(s) 525, 625
Bst6I CTCTTC 2 cut(s) 471, 555
BstAUI TGTACA 1 cut(s) 492
BstC8I GCNNGC 1 cut(s) 791
BstDEI CTNAG 2 cut(s) 823, 909
BstF5I GGATG 2 cut(s) 50, 730
BstKTI GATC 5 cut(s) 23, 430, 461, 607, 651
BstMAI GTCTC 1 cut(s) 290
BstMBI GATC 5 cut(s) 20, 427, 458, 604, 648
BstMWI GCNNNNNNNGC 2 cut(s) 137, 790
BstNI CCWGG 2 cut(s) 71, 786
BstPAI GACNNNNGTC 1 cut(s) 119
BstSCI CCNGG 3 cut(s) 69, 360, 784
BstSFI CTRYAG 2 cut(s) 624, 873
BstV1I GCAGC 2 cut(s) 107, 137
BstV2I GAAGAC 1 cut(s) 316
BstX2I RGATCY 2 cut(s) 20, 427
BstYI RGATCY 2 cut(s) 20, 427
Bsu36I CCTNAGG 1 cut(s) 823
BsuRI GGCC 2 cut(s) 598, 762
BtsCI GGATG 2 cut(s) 50, 730
Cac8I GCNNGC 1 cut(s) 791
CciI TCATGA 1 cut(s) 651
Cfr10I RCCGGY 1 cut(s) 466
Cfr13I GGNCC 1 cut(s) 596
Csp6I GTAC 2 cut(s) 74, 493
CviAII CATG 5 cut(s) 168, 369, 541, 566, 652
CviQI GTAC 2 cut(s) 74, 493
DdeI CTNAG 2 cut(s) 823, 909
DpnI GATC 5 cut(s) 22, 429, 460, 606, 650
DpnII GATC 5 cut(s) 20, 427, 458, 604, 648
DraI TTTAAA 1 cut(s) 255
Eam1104I CTCTTC 2 cut(s) 471, 555
EarI CTCTTC 2 cut(s) 471, 555
Ecl136II GAGCTC 1 cut(s) 864
Eco130I CCWWGG 3 cut(s) 390, 399, 763
Eco24I GRGCYC 1 cut(s) 866
Eco31I GGTCTC 1 cut(s) 290
Eco53kI GAGCTC 1 cut(s) 864
Eco81I CCTNAGG 1 cut(s) 823
EcoICRI GAGCTC 1 cut(s) 864
EcoO109I RGGNCCY 1 cut(s) 596
EcoRII CCWGG 2 cut(s) 69, 784
EcoT14I CCWWGG 3 cut(s) 390, 399, 763
EcoT38I GRGCYC 1 cut(s) 866
ErhI CCWWGG 3 cut(s) 390, 399, 763
FaeI CATG 5 cut(s) 171, 372, 544, 569, 655
FaqI GGGAC 1 cut(s) 646
FatI CATG 5 cut(s) 167, 368, 540, 565, 651
FblI GTMKAC 1 cut(s) 627
Fnu4HI GCNGC 2 cut(s) 96, 151
FokI GGATG 2 cut(s) 37, 737
FriOI GRGCYC 1 cut(s) 866
Fsp4HI GCNGC 2 cut(s) 96, 151
FspBI CTAG 4 cut(s) 137, 422, 431, 807
GluI GCNGC 2 cut(s) 96, 151
HaeIII GGCC 2 cut(s) 598, 762
HapII CCGG 3 cut(s) 141, 362, 467
Hin1II CATG 5 cut(s) 171, 372, 544, 569, 655
HindIII AAGCTT 1 cut(s) 582
HinfI GANTC 2 cut(s) 643, 803
HpaII CCGG 3 cut(s) 141, 362, 467
HphI GGTGA 1 cut(s) 843
Hpy166II GTNNAC 3 cut(s) 325, 628, 749
Hpy188I TCNGA 3 cut(s) 376, 648, 841
Hpy188III TCNNGA 3 cut(s) 224, 608, 652
Hpy8I GTNNAC 3 cut(s) 325, 628, 749
HpyAV CCTTC 3 cut(s) 304, 493, 542
HpyCH4III ACNGT 2 cut(s) 525, 625
HpyCH4IV ACGT 1 cut(s) 116
HpyCH4V TGCA 2 cut(s) 153, 243
HpyF10VI GCNNNNNNNGC 2 cut(s) 137, 790
HpyF3I CTNAG 2 cut(s) 823, 909
HpySE526I ACGT 1 cut(s) 116
Hsp92II CATG 5 cut(s) 171, 372, 544, 569, 655
Kzo9I GATC 5 cut(s) 20, 427, 458, 604, 648
LguI GCTCTTC 1 cut(s) 555
LmnI GCTCC 2 cut(s) 103, 536
Lsp1109I GCAGC 2 cut(s) 107, 137
LweI GCATC 1 cut(s) 430
MaeI CTAG 4 cut(s) 137, 422, 431, 807
MaeII ACGT 1 cut(s) 116
MaeIII GTNAC 4 cut(s) 112, 157, 433, 815
MalI GATC 5 cut(s) 22, 429, 460, 606, 650
MboI GATC 5 cut(s) 20, 427, 458, 604, 648
MboII GAAGA 5 cut(s) 5, 98, 321, 488, 572
MfeI CAATTG 1 cut(s) 266
MflI RGATCY 2 cut(s) 20, 427
MhlI GDGCHC 1 cut(s) 866
MluCI AATT 6 cut(s) 256, 266, 347, 661, 714, 835
MlyI GAGTC 1 cut(s) 812
MmeI TCCRAC 2 cut(s) 78, 525
MnlI CCTC 6 cut(s) 191, 400, 472, 545, 668, 832
MseI TTAA 1 cut(s) 254
MslI CAYNNNNRTG 1 cut(s) 206
MspI CCGG 3 cut(s) 141, 362, 467
MspR9I CCNGG 3 cut(s) 71, 362, 786
MunI CAATTG 1 cut(s) 266
MvaI CCWGG 2 cut(s) 71, 786
MwoI GCNNNNNNNGC 2 cut(s) 137, 790
NciI CCSGG 1 cut(s) 362
NdeII GATC 5 cut(s) 20, 427, 458, 604, 648
NlaIII CATG 5 cut(s) 171, 372, 544, 569, 655
NlaIV GGNNCC 2 cut(s) 22, 366
NmuCI GTSAC 4 cut(s) 112, 157, 433, 815
PagI TCATGA 1 cut(s) 651
PciSI GCTCTTC 1 cut(s) 555
PfeI GAWTC 1 cut(s) 643
PflFI GACNNNGTC 1 cut(s) 572
PkrI GCNGC 2 cut(s) 97, 152
PleI GAGTC 1 cut(s) 811
PpsI GAGTC 1 cut(s) 811
PshAI GACNNNNGTC 1 cut(s) 119
PsiI TTATAA 1 cut(s) 447
Psp124BI GAGCTC 1 cut(s) 866
Psp6I CCWGG 2 cut(s) 69, 784
PspGI CCWGG 2 cut(s) 69, 784
PspN4I GGNNCC 2 cut(s) 22, 366
PspPI GGNCC 1 cut(s) 596
PsuI RGATCY 2 cut(s) 20, 427
PsyI GACNNNGTC 1 cut(s) 572
RsaI GTAC 2 cut(s) 75, 494
RsaNI GTAC 2 cut(s) 74, 493
RseI CAYNNNNRTG 1 cut(s) 206
SacI GAGCTC 1 cut(s) 866
SapI GCTCTTC 1 cut(s) 555
SaqAI TTAA 1 cut(s) 254
SatI GCNGC 2 cut(s) 96, 151
Sau3AI GATC 5 cut(s) 20, 427, 458, 604, 648
Sau96I GGNCC 1 cut(s) 596
SchI GAGTC 1 cut(s) 812
ScrFI CCNGG 3 cut(s) 71, 362, 786
SduI GDGCHC 1 cut(s) 866
SfaNI GCATC 1 cut(s) 430
SfcI CTRYAG 2 cut(s) 624, 873
SmiI ATTTAAAT 1 cut(s) 255
SmiMI CAYNNNNRTG 1 cut(s) 206
Sse9I AATT 6 cut(s) 256, 266, 347, 661, 714, 835
SspMI CTAG 4 cut(s) 137, 422, 431, 807
SstI GAGCTC 1 cut(s) 866
StyD4I CCNGG 3 cut(s) 69, 360, 784
StyI CCWWGG 3 cut(s) 390, 399, 763
SwaI ATTTAAAT 1 cut(s) 255
TaaI ACNGT 2 cut(s) 525, 625
TaiI ACGT 1 cut(s) 119
TaqI TCGA 4 cut(s) 35, 204, 297, 337
TasI AATT 6 cut(s) 256, 266, 347, 661, 714, 835
TatI WGTACW 1 cut(s) 492
TfiI GAWTC 1 cut(s) 643
Tru1I TTAA 1 cut(s) 254
Tru9I TTAA 1 cut(s) 254
TseFI GTSAC 4 cut(s) 112, 157, 433, 815
TseI GCWGC 2 cut(s) 95, 150
Tsp45I GTSAC 4 cut(s) 112, 157, 433, 815
TspDTI ATGAA 2 cut(s) 668, 763
Tth111I GACNNNGTC 1 cut(s) 572
XapI RAATTY 4 cut(s) 256, 347, 714, 835
XcmI CCANNNNNNNNNTGG 2 cut(s) 406, 541
XmiI GTMKAC 1 cut(s) 627
XspI CTAG 4 cut(s) 137, 422, 431, 807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.