AT3G13560

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
4425191 .. 4428199
3009 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G13560.5

Sequence Viewer

Length: 1518 bp
ATGCTGCTTCCGAGATGGTTTGCAGAAGCGTTGTTGCTCCTACTTTCAATTCTTGCCTGTTCAAACGCTGCATTTATCGGTGTAAACATTGGCACTGATCTCACCAACATGCCACCGCCTTCAGACATTGTAACACTTCTCAAATCACAACAAATCACACACGTCCGTCTCTATGATGCTAATAGCCATATGCTCAAAGCATTTGCCAACACTAGCATCGAAGTTATGGTCGGTGTAACCAATGAAGAAATCCTCAAAATCGGACGGTTTCCTTCAGCTGCAGCTGCTTGGGTTAACAAAAACGTCGCTGCTTATATTCCTTCAACTAATATAACCGCCATTGCTGTTGGTAGTGAGGTTCTCACCACGATTCCTCACGTGGCGCCGATTCTCGCCTCTGCTCTTAACAACATTCACAAGGCTCTTGTGGCTTCCAATCTCAACTTTAAGGTCAAAGTCTCCAGCCCTATGTCTATGGATATAATGCCTAAACCGTTTCCTCCATCTACATCTACCTTTAGCCCGTCGTGGAACACCACGGTTTACCAGCTTCTTCAGTTTTTGAAGAACACTGGTTCCTTTTTCATGTTAAACGCGTATCCTTACTACGGTTACACAACCGCTAATGGGATTTTCCCGCTTGATTACGCTTTGTTCAAGCAGCTTTCTCCGGTGAAGCAGATTGTTGATCCCAACACGCTTTTACATTACAACAGCATGTTTGATGCTATGGTTGATGCTGCTTACTACTCCATGGAAGCTTTGAATTTCTCCAAGATTCCTGTTGTAGTCACGGAAACAGGCTGGCCTTCGTCTGGTGGAAGCGATGAAGCGGCTGCAACAGTCGCTAATGCGGAGACATTCAACACTAACTTGATCAAGAGAGTGCTGAACAACTCAGGTCCTCCTAGTCAACCAGACATACCGATAAACACTTACATCTACGAGCTGTACAATGAAGACAAGCGGTCAGGACCAGTCTCTGAAAGAAACTGGGGGATTTTGTTTCCAAATGGGACCTCGGTTTACCCTCTGAGTTTGAGTGGTGGCTCTAGCTCCGCAGCTCTAAACGGTTCATCGATGTTCTGCGTGGCTAAAGCAGATGCTGATGATGATAAGTTGGTTGACGGTTTGAATTGGGCGTGTGGTCAAGGCCGAGCTAACTGCGCTGCCATTCAACCGGGCCAACCTTGCTACCTCCCTAACGATGTTAAGAGCCATGCTTCTTTTGCTTTCAATGACTATTACCAGAAGATGAAAAGTGCAGGTGGAACTTGTGACTTTGATGGTACGGCTATCACTACGACTAGAGATCCTAGCTATAGAACATGTGCATATACGGGAAGCTTAAACGCAAACGCTACTAATGGAAACTTTCCTCCGGATGCGTTAGGACCCGCAAGTCCATTGGGAGGAAACGCAAACGCACGTATCATCTTTAGCTACCATCTTCCCATATTGGCACCGTTAGCTCTCACTCTACTACAACTGTTGCTTCAGCATGACCGCCTTTTGTAG

Protein Analysis

505

Amino Acids

54.42

Weight (kDa)

5.9

Isoelectric Point (pI)

39.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 26 - 345 1e-73 Glycosyl hydrolases family 17
X8 PF07983 362 - 432 9.5e-22 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1256
AasI GACNNNNNNGTC 1 cut(s) 1401
Acc36I ACCTGC 1 cut(s) 1256
AccB1I GGYRCC 2 cut(s) 382, 1462
AccII CGCG 1 cut(s) 596
AccIII TCCGGA 1 cut(s) 1381
AclWI GGATC 2 cut(s) 683, 1307
AcsI RAATTY 1 cut(s) 766
AcuI CTGAAG 4 cut(s) 105, 258, 539, 1481
AcvI CACGTG 1 cut(s) 379
AcyI GRCGYC 1 cut(s) 383
AfaI GTAC 2 cut(s) 953, 1291
AfiI CCNNNNNNNGG 4 cut(s) 608, 627, 815, 1412
AflIII ACRYGT 3 cut(s) 160, 594, 1328
AhdI GACNNNNNGTC 1 cut(s) 967
AjiI CACGTC 1 cut(s) 163
AloI GAACNNNNNNTCC 2 cut(s) 560, 592
Alw26I GTCTC 4 cut(s) 173, 463, 851, 985
AlwI GGATC 2 cut(s) 683, 1307
AlwNI CAGNNNCTG 2 cut(s) 983, 1106
Aor13HI TCCGGA 1 cut(s) 1381
AoxI GGCC 3 cut(s) 806, 1153, 1183
ApoI RAATTY 1 cut(s) 766
ArsI GACNNNNNNTTYG 2 cut(s) 213, 245
AspLEI GCGC 2 cut(s) 385, 1169
AspS9I GGNCC 5 cut(s) 902, 974, 1017, 1183, 1394
AsuC2I CCSGG 1 cut(s) 1182
AsuHPI GGTGA 3 cut(s) 94, 355, 685
AvaII GGWCC 4 cut(s) 902, 974, 1017, 1394
BaeI ACNNNNGTAYC 2 cut(s) 1414, 1447
BanI GGYRCC 2 cut(s) 382, 1462
BbrPI CACGTG 1 cut(s) 379
BbsI GAAGAC 1 cut(s) 966
BccI CCATC 4 cut(s) 9, 511, 1280, 1455
BceAI ACGGC 1 cut(s) 1308
BcgI CGANNNNNNTGC 2 cut(s) 1146, 1180
BciVI GTATCC 1 cut(s) 609
BclI TGATCA 1 cut(s) 876
BcnI CCSGG 1 cut(s) 1182
BcoDI GTCTC 4 cut(s) 173, 463, 851, 985
BfaI CTAG 5 cut(s) 213, 909, 1053, 1308, 1317
BfmI CTRYAG 2 cut(s) 279, 1321
BfoI RGCGCY 1 cut(s) 386
BfuAI ACCTGC 1 cut(s) 1256
BfuI GTATCC 1 cut(s) 609
Bme1390I CCNGG 1 cut(s) 1182
Bme18I GGWCC 4 cut(s) 902, 974, 1017, 1394
BmeRI GACNNNNNGTC 1 cut(s) 967
BmgBI CACGTC 1 cut(s) 163
BmgT120I GGNCC 5 cut(s) 902, 974, 1017, 1183, 1394
BmiI GGNNCC 5 cut(s) 384, 577, 1018, 1396, 1464
BmrFI CCNGG 1 cut(s) 1182
BmrI ACTGGG 1 cut(s) 1003
BmsI GCATC 6 cut(s) 166, 225, 715, 727, 1093, 1375
BmuI ACTGGG 1 cut(s) 1003
BpiI GAAGAC 1 cut(s) 966
BpmI CTGGAG 1 cut(s) 445
BpuMI CCSGG 1 cut(s) 1182
Bsa29I ATCGAT 1 cut(s) 1079
BsaAI YACGTR 2 cut(s) 379, 1430
BsaHI GRCGYC 1 cut(s) 383
BsaJI CCNNGG 3 cut(s) 537, 753, 1020
BsaWI WCCGGW 2 cut(s) 670, 1381
Bsc4I CCNNNNNNNGG 4 cut(s) 608, 627, 815, 1412
Bse1I ACTGG 3 cut(s) 577, 977, 998
Bse3DI GCAATG 1 cut(s) 339
BseAI TCCGGA 1 cut(s) 1381
BseCI ATCGAT 1 cut(s) 1079
BseDI CCNNGG 3 cut(s) 537, 753, 1020
BseGI GGATG 1 cut(s) 1390
BseLI CCNNNNNNNGG 4 cut(s) 608, 627, 815, 1412
BseMI GCAATG 1 cut(s) 339
BseMII CTCAG 2 cut(s) 912, 1025
BseNI ACTGG 3 cut(s) 577, 977, 998
BsgI GTGCAG 1 cut(s) 1284
Bsh1236I CGCG 1 cut(s) 596
BshFI GGCC 3 cut(s) 808, 1155, 1185
BshNI GGYRCC 2 cut(s) 382, 1462
BshVI ATCGAT 1 cut(s) 1079
BsiSI CCGG 3 cut(s) 671, 1181, 1382
BslFI GGGAC 1 cut(s) 1030
BslI CCNNNNNNNGG 4 cut(s) 608, 627, 815, 1412
BsmAI GTCTC 4 cut(s) 173, 463, 851, 985
BsmBI CGTCTC 1 cut(s) 173
BsmFI GGGAC 1 cut(s) 1030
BsnI GGCC 3 cut(s) 808, 1155, 1185
Bsp13I TCCGGA 1 cut(s) 1381
Bsp1407I TGTACA 1 cut(s) 951
Bsp143I GATC 4 cut(s) 97, 688, 876, 1312
Bsp19I CCATGG 1 cut(s) 753
BspANI GGCC 3 cut(s) 808, 1155, 1185
BspCNI CTCAG 2 cut(s) 911, 1026
BspDI ATCGAT 1 cut(s) 1079
BspEI TCCGGA 1 cut(s) 1381
BspFNI CGCG 1 cut(s) 596
BspLI GGNNCC 5 cut(s) 384, 577, 1018, 1396, 1464
BspMAI CTGCAG 1 cut(s) 283
BspMI ACCTGC 1 cut(s) 1256
BspPI GGATC 2 cut(s) 683, 1307
BspT107I GGYRCC 2 cut(s) 382, 1462
BsrDI GCAATG 1 cut(s) 339
BsrGI TGTACA 1 cut(s) 951
BsrI ACTGG 3 cut(s) 577, 977, 998
BssECI CCNNGG 3 cut(s) 537, 753, 1020
BssMI GATC 4 cut(s) 97, 688, 876, 1312
BssNI GRCGYC 1 cut(s) 383
BssT1I CCWWGG 1 cut(s) 753
Bst4CI ACNGT 9 cut(s) 267, 495, 541, 611, 844, 1073, 1130, 1467, 1491
BstACI GRCGYC 1 cut(s) 383
BstAUI TGTACA 1 cut(s) 951
BstBAI YACGTR 2 cut(s) 379, 1430
BstC8I GCNNGC 1 cut(s) 806
BstDEI CTNAG 2 cut(s) 898, 1034
BstDSI CCRYGG 2 cut(s) 537, 753
BstF5I GGATG 1 cut(s) 1390
BstFNI CGCG 1 cut(s) 596
BstH2I RGCGCY 1 cut(s) 386
BstHHI GCGC 2 cut(s) 385, 1169
BstKTI GATC 4 cut(s) 100, 691, 879, 1315
BstMAI GTCTC 4 cut(s) 173, 463, 851, 985
BstMBI GATC 4 cut(s) 97, 688, 876, 1312
BstMWI GCNNNNNNNGC 7 cut(s) 284, 428, 845, 1166, 1191, 1229, 1469
BstNSI RCATGY 3 cut(s) 112, 721, 1332
BstSCI CCNGG 1 cut(s) 1180
BstSFI CTRYAG 2 cut(s) 279, 1321
BstUI CGCG 1 cut(s) 596
BstV2I GAAGAC 1 cut(s) 966
BstX2I RGATCY 1 cut(s) 1312
BstYI RGATCY 1 cut(s) 1312
Bsu15I ATCGAT 1 cut(s) 1079
BsuI GTATCC 1 cut(s) 609
BsuRI GGCC 3 cut(s) 808, 1155, 1185
BsuTUI ATCGAT 1 cut(s) 1079
BtgI CCRYGG 2 cut(s) 537, 753
BtgZI GCGATG 1 cut(s) 840
BtrI CACGTC 1 cut(s) 163
BtsCI GGATG 1 cut(s) 1390
BtsIMutI CAGTG 2 cut(s) 93, 570
BveI ACCTGC 1 cut(s) 1256
Cac8I GCNNGC 1 cut(s) 806
CaiI CAGNNNCTG 2 cut(s) 983, 1106
CfoI GCGC 2 cut(s) 385, 1169
Cfr13I GGNCC 5 cut(s) 902, 974, 1017, 1183, 1394
ClaI ATCGAT 1 cut(s) 1079
Csp6I GTAC 2 cut(s) 952, 1290
CviAII CATG 7 cut(s) 109, 586, 718, 754, 1220, 1329, 1502
CviQI GTAC 2 cut(s) 952, 1290
DdeI CTNAG 2 cut(s) 898, 1034
DinI GGCGCC 1 cut(s) 384
DpnI GATC 4 cut(s) 99, 690, 878, 1314
DpnII GATC 4 cut(s) 97, 688, 876, 1312
DrdI GACNNNNNNGTC 1 cut(s) 1401
DriI GACNNNNNGTC 1 cut(s) 967
DseDI GACNNNNNNGTC 1 cut(s) 1401
Eam1105I GACNNNNNGTC 1 cut(s) 967
Eco130I CCWWGG 1 cut(s) 753
Eco47I GGWCC 4 cut(s) 902, 974, 1017, 1394
Eco57I CTGAAG 4 cut(s) 105, 258, 539, 1481
Eco72I CACGTG 1 cut(s) 379
EcoO109I RGGNCCY 3 cut(s) 902, 1017, 1394
EcoT14I CCWWGG 1 cut(s) 753
EgeI GGCGCC 1 cut(s) 384
EheI GGCGCC 1 cut(s) 384
ErhI CCWWGG 1 cut(s) 753
Esp3I CGTCTC 1 cut(s) 173
FaeI CATG 7 cut(s) 112, 589, 721, 757, 1223, 1332, 1505
FaqI GGGAC 1 cut(s) 1030
FatI CATG 7 cut(s) 108, 585, 717, 753, 1219, 1328, 1501
FauI CCCGC 2 cut(s) 645, 1405
FauNDI CATATG 1 cut(s) 189
FbaI TGATCA 1 cut(s) 876
FokI GGATG 1 cut(s) 1397
FspBI CTAG 5 cut(s) 213, 909, 1053, 1308, 1317
GlaI GCGC 2 cut(s) 384, 1168
GsuI CTGGAG 1 cut(s) 445
HaeII RGCGCY 1 cut(s) 386
HaeIII GGCC 3 cut(s) 808, 1155, 1185
HapII CCGG 3 cut(s) 671, 1181, 1382
HhaI GCGC 2 cut(s) 385, 1169
Hin1I GRCGYC 1 cut(s) 383
Hin1II CATG 7 cut(s) 112, 589, 721, 757, 1223, 1332, 1505
Hin6I GCGC 2 cut(s) 383, 1167
HinP1I GCGC 2 cut(s) 383, 1167
HincII GTYRAC 3 cut(s) 295, 914, 1126
HindII GTYRAC 3 cut(s) 295, 914, 1126
HindIII AAGCTT 2 cut(s) 759, 1345
HinfI GANTC 3 cut(s) 370, 388, 778
HpaI GTTAAC 1 cut(s) 295
HpaII CCGG 3 cut(s) 671, 1181, 1382
HphI GGTGA 3 cut(s) 94, 355, 685
Hpy166II GTNNAC 6 cut(s) 85, 295, 544, 914, 1027, 1126
Hpy188I TCNGA 5 cut(s) 12, 124, 263, 985, 1035
Hpy188III TCNNGA 3 cut(s) 880, 972, 1382
Hpy8I GTNNAC 6 cut(s) 85, 295, 544, 914, 1027, 1126
Hpy99I CGWCG 2 cut(s) 308, 529
HpyAV CCTTC 4 cut(s) 129, 282, 330, 819
HpyCH4III ACNGT 9 cut(s) 267, 495, 541, 611, 844, 1073, 1130, 1467, 1491
HpyCH4IV ACGT 4 cut(s) 162, 303, 378, 1429
HpyCH4V TGCA 6 cut(s) 23, 71, 281, 839, 1265, 1334
HpyF10VI GCNNNNNNNGC 7 cut(s) 284, 428, 845, 1166, 1191, 1229, 1469
HpyF3I CTNAG 2 cut(s) 898, 1034
HpySE526I ACGT 4 cut(s) 162, 303, 378, 1429
Hsp92I GRCGYC 1 cut(s) 383
Hsp92II CATG 7 cut(s) 112, 589, 721, 757, 1223, 1332, 1505
HspAI GCGC 2 cut(s) 383, 1167
KasI GGCGCC 1 cut(s) 382
Kpn2I TCCGGA 1 cut(s) 1381
Ksp22I TGATCA 1 cut(s) 876
KspAI GTTAAC 1 cut(s) 295
Kzo9I GATC 4 cut(s) 97, 688, 876, 1312
LmnI GCTCC 2 cut(s) 42, 1061
LweI GCATC 6 cut(s) 166, 225, 715, 727, 1093, 1375
MaeI CTAG 5 cut(s) 213, 909, 1053, 1308, 1317
MaeII ACGT 4 cut(s) 162, 303, 378, 1429
MaeIII GTNAC 5 cut(s) 130, 235, 611, 790, 1277
MalI GATC 4 cut(s) 99, 690, 878, 1314
MboI GATC 4 cut(s) 97, 688, 876, 1312
MboII GAAGA 6 cut(s) 257, 545, 577, 971, 1264, 1442
MflI RGATCY 1 cut(s) 1312
MluCI AATT 3 cut(s) 48, 766, 1135
MluI ACGCGT 1 cut(s) 594
Mly113I GGCGCC 1 cut(s) 383
MroI TCCGGA 1 cut(s) 1381
MseI TTAA 6 cut(s) 294, 405, 447, 590, 1212, 1349
MslI CAYNNNNRTG 1 cut(s) 107
MspA1I CMGCKG 2 cut(s) 278, 284
MspI CCGG 3 cut(s) 671, 1181, 1382
MspR9I CCNGG 1 cut(s) 1182
MvnI CGCG 1 cut(s) 596
MwoI GCNNNNNNNGC 7 cut(s) 284, 428, 845, 1166, 1191, 1229, 1469
NarI GGCGCC 1 cut(s) 383
NciI CCSGG 1 cut(s) 1182
NcoI CCATGG 1 cut(s) 753
NdeI CATATG 1 cut(s) 189
NdeII GATC 4 cut(s) 97, 688, 876, 1312
NlaIII CATG 7 cut(s) 112, 589, 721, 757, 1223, 1332, 1505
NlaIV GGNNCC 5 cut(s) 384, 577, 1018, 1396, 1464
NmeAIII GCCGAG 1 cut(s) 1181
NmuCI GTSAC 2 cut(s) 790, 1277
NspI RCATGY 3 cut(s) 112, 721, 1332
PaqCI CACCTGC 1 cut(s) 1256
PciI ACATGT 1 cut(s) 1328
PfeI GAWTC 3 cut(s) 370, 388, 778
PluTI GGCGCC 1 cut(s) 386
PmaCI CACGTG 1 cut(s) 379
PmlI CACGTG 1 cut(s) 379
Ppu21I YACGTR 2 cut(s) 379, 1430
PpuMI RGGWCCY 3 cut(s) 902, 1017, 1394
PscI ACATGT 1 cut(s) 1328
Psp5II RGGWCCY 3 cut(s) 902, 1017, 1394
PspCI CACGTG 1 cut(s) 379
PspN4I GGNNCC 5 cut(s) 384, 577, 1018, 1396, 1464
PspPI GGNCC 5 cut(s) 902, 974, 1017, 1183, 1394
PspPPI RGGWCCY 3 cut(s) 902, 1017, 1394
PstI CTGCAG 1 cut(s) 283
PstNI CAGNNNCTG 2 cut(s) 983, 1106
PsuI RGATCY 1 cut(s) 1312
PvuII CAGCTG 2 cut(s) 278, 284
RsaI GTAC 2 cut(s) 953, 1291
RsaNI GTAC 2 cut(s) 952, 1290
RseI CAYNNNNRTG 1 cut(s) 107
SaqAI TTAA 6 cut(s) 294, 405, 447, 590, 1212, 1349
Sau3AI GATC 4 cut(s) 97, 688, 876, 1312
Sau96I GGNCC 5 cut(s) 902, 974, 1017, 1183, 1394
ScrFI CCNGG 1 cut(s) 1182
SfaNI GCATC 6 cut(s) 166, 225, 715, 727, 1093, 1375
SfcI CTRYAG 2 cut(s) 279, 1321
SfoI GGCGCC 1 cut(s) 384
SinI GGWCC 4 cut(s) 902, 974, 1017, 1394
SmiMI CAYNNNNRTG 1 cut(s) 107
Sse9I AATT 3 cut(s) 48, 766, 1135
SspDI GGCGCC 1 cut(s) 382
SspMI CTAG 5 cut(s) 213, 909, 1053, 1308, 1317
StyD4I CCNGG 1 cut(s) 1180
StyI CCWWGG 1 cut(s) 753
TaaI ACNGT 9 cut(s) 267, 495, 541, 611, 844, 1073, 1130, 1467, 1491
TaiI ACGT 4 cut(s) 165, 306, 381, 1432
TaqI TCGA 2 cut(s) 219, 1079
TasI AATT 3 cut(s) 48, 766, 1135
TatI WGTACW 1 cut(s) 951
TauI GCSGC 1 cut(s) 836
TfiI GAWTC 3 cut(s) 370, 388, 778
Tru1I TTAA 6 cut(s) 294, 405, 447, 590, 1212, 1349
Tru9I TTAA 6 cut(s) 294, 405, 447, 590, 1212, 1349
TscAI CASTG 2 cut(s) 100, 577
TseFI GTSAC 2 cut(s) 790, 1277
Tsp45I GTSAC 2 cut(s) 790, 1277
TspDTI ATGAA 6 cut(s) 258, 574, 843, 972, 1065, 1271
TspGWI ACGGA 2 cut(s) 155, 809
TspRI CASTG 2 cut(s) 100, 577
VpaK11BI GGWCC 4 cut(s) 902, 974, 1017, 1394
XapI RAATTY 1 cut(s) 766
XceI RCATGY 3 cut(s) 112, 721, 1332
XspI CTAG 5 cut(s) 213, 909, 1053, 1308, 1317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.