Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004818

Physical Location & Seq

Genomic Coordinates Reverse (-)

66367980 .. 66371194

Gene Structure 3215 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0482300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGAGATTCTGGATTTGGAGATTTACTTGCGACCAAGCTTTAGCCGCAATTACTTTGTCAAACTGCATTGTTGCTCACAATAATGACTTGTTCGCTTTGCTGGTGTCCTATAACTTTGCCGAGATAAAAAGCAATGTGTTCAAGCGATATAGTAAGGAAAACATTTATAGCCTGAACGCTGGTGTGGTATTCGTCTGTGAAATGATCATCGATATCGTAAAGCACTCGTTCATTGCTAAGTTCAATGACATAAAGCCCTTTGCATACTCTGAGTTTCTTGAAGGACCTATGCAAGCAGCTATTATTCCTGCTAGGGATAAGCCAATCTTGACTATGCTTGAGAAGATAAGGATGGACTTGATGGTTAGGATAACTAACAGAAGAGTTGCAGTTCAGGGCTGGAAAGATATGGTTGGCCCTAGGATTAAGAAGATTATGGATAAGGTGGCAGAGAGAACTTCATGTTATAGAGCATGGAGTAGTGGTGAACTTGAGTTTCAAATTACTGGAGGGGGAGATAATGGCAGCAAACATGCTGTGGACTTGAGGCTTCACACATGTACATGTAGGAGGTGGCAATTGAGTGTCATACCTTGTGTTCATGCCATATGTGCCATTAGAAGCAAGAAAGCAGAACATGCCCTGTTTTGTGATGACTACTTAATGCCTTCTAGTTATATGGAGGCATACAGTCCCATTATCCATCCTATTGCTGGGGAGGATGATTGGGAAGTTGTGGATTACCCTATTTGCACTCTCCCATATAAGAAGCAAGCTGGAAGACCTAGAATGACCAGATTCAAGGAACCGGGTGAGAACAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00500 ko04120 map00500 map04120

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

274

Amino Acids

31.47

Weight (kDa)

8.84

Isoelectric Point (pI)

31.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF747	PF05346	14 - 58	6.1e-12	Eukaryotic membrane protein family
DUF747	PF05346	62 - 95	4.9e-10	Eukaryotic membrane protein family
SWIM	PF04434	180 - 206	5.9e-07	SWIM zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13560 AT3G13560 AT3G13560 AT3G13560 AT3G13560
fragaria_vesca	FvH4_3g45330 FvH4_3g45330 FvH4_3g45330 FvH4_3g45330 FvH4_3g45330 FvH4_3g45330 FvH4_3g45330
malus_domestica	MD03G1005900.v1.1 MD11G1008900.v1.1
prunus_persica	Prupe.6G005700_v2.0.a1 Prupe.6G005700_v2.0.a1 Prupe.6G005700_v2.0.a1
pyrus_communis	pycom03g00600 pycom11g00580
rosa_chinensis	RchiOBHm_Chr5g0083121
rosa_laevigata	RLG00000037012
rosa_multiflora	Rmu_co8420859.1_g000001 Rmu_sc0002900.1_g000005 Rmu_sc0029325.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001390
rosa_rugosa	Rorug05G0482300
rosa_samantha	Rh5AG532000 Rh5BG559100 Rh5CG582000 Rh5DG567900
rosa_wichuraiana	Rw5G049640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	45
AfaI	GTAC	1 cut(s)	562
AfiI	CCNNNNNNNGG	1 cut(s)	713
AflIII	ACRYGT	2 cut(s)	557, 563
AgsI	TTSAA	5 cut(s)	142, 244, 281, 500, 802
AluBI	AGCT	3 cut(s)	38, 299, 776
AluI	AGCT	3 cut(s)	38, 299, 776
AoxI	GGCC	1 cut(s)	415
ApeKI	GCWGC	2 cut(s)	296, 525
AspA2I	CCTAGG	1 cut(s)	419
AspS9I	GGNCC	2 cut(s)	284, 416
AsuC2I	CCSGG	1 cut(s)	810
AsuHPI	GGTGA	2 cut(s)	497, 824
AvaII	GGWCC	1 cut(s)	284
AvrII	CCTAGG	1 cut(s)	419
BbsI	GAAGAC	1 cut(s)	787
BbvI	GCAGC	2 cut(s)	308, 537
BccI	CCATC	3 cut(s)	346, 355, 711
BclI	TGATCA	1 cut(s)	204
BcnI	CCSGG	1 cut(s)	810
BfaI	CTAG	4 cut(s)	312, 420, 672, 786
BisI	GCNGC	3 cut(s)	45, 297, 526
BlnI	CCTAGG	1 cut(s)	419
BlsI	GCNGC	3 cut(s)	46, 298, 527
Bme1390I	CCNGG	1 cut(s)	810
Bme18I	GGWCC	1 cut(s)	284
BmgT120I	GGNCC	2 cut(s)	284, 416
BmiI	GGNNCC	1 cut(s)	807
BmrFI	CCNGG	1 cut(s)	810
BpiI	GAAGAC	1 cut(s)	787
BpmI	CTGGAG	1 cut(s)	528
BpuEI	CTTGAG	3 cut(s)	359, 512, 565
BpuMI	CCSGG	1 cut(s)	810
Bsa29I	ATCGAT	1 cut(s)	210
BsaJI	CCNNGG	1 cut(s)	419
BsaXI	ACNNNNNCTCC	2 cut(s)	469, 499
Bsc4I	CCNNNNNNNGG	1 cut(s)	713
Bse1I	ACTGG	1 cut(s)	511
Bse3DI	GCAATG	2 cut(s)	139, 231
BseCI	ATCGAT	1 cut(s)	210
BseDI	CCNNGG	1 cut(s)	419
BseGI	GGATG	3 cut(s)	357, 703, 727
BseLI	CCNNNNNNNGG	1 cut(s)	713
BseMI	GCAATG	2 cut(s)	139, 231
BseMII	CTCAG	1 cut(s)	261
BseNI	ACTGG	1 cut(s)	511
BseXI	GCAGC	2 cut(s)	308, 537
BseYI	CCCAGC	1 cut(s)	713
BshFI	GGCC	1 cut(s)	417
BshVI	ATCGAT	1 cut(s)	210
BsiSI	CCGG	1 cut(s)	809
BslFI	GGGAC	1 cut(s)	678
BslI	CCNNNNNNNGG	1 cut(s)	713
BsmFI	GGGAC	1 cut(s)	678
BsnI	GGCC	1 cut(s)	417
Bsp1407I	TGTACA	1 cut(s)	560
Bsp143I	GATC	1 cut(s)	204
BspACI	CCGC	1 cut(s)	45
BspANI	GGCC	1 cut(s)	417
BspCNI	CTCAG	1 cut(s)	262
BspDI	ATCGAT	1 cut(s)	210
BspLI	GGNNCC	1 cut(s)	807
BsrDI	GCAATG	2 cut(s)	139, 231
BsrGI	TGTACA	1 cut(s)	560
BsrI	ACTGG	1 cut(s)	511
BssECI	CCNNGG	1 cut(s)	419
BssMI	GATC	1 cut(s)	204
BssT1I	CCWWGG	1 cut(s)	419
Bst4CI	ACNGT	1 cut(s)	692
Bst6I	CTCTTC	1 cut(s)	376
BstAPI	GCANNNNNTGC	1 cut(s)	638
BstAUI	TGTACA	1 cut(s)	560
BstC8I	GCNNGC	2 cut(s)	294, 774
BstDEI	CTNAG	2 cut(s)	237, 270
BstF5I	GGATG	3 cut(s)	357, 703, 727
BstKTI	GATC	1 cut(s)	207
BstMBI	GATC	1 cut(s)	204
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 611, 638
BstNSI	RCATGY	4 cut(s)	536, 561, 567, 641
BstSCI	CCNGG	1 cut(s)	808
BstV1I	GCAGC	2 cut(s)	308, 537
BstV2I	GAAGAC	1 cut(s)	787
Bsu15I	ATCGAT	1 cut(s)	210
BsuRI	GGCC	1 cut(s)	417
BsuTUI	ATCGAT	1 cut(s)	210
BtsCI	GGATG	3 cut(s)	357, 703, 727
Cac8I	GCNNGC	2 cut(s)	294, 774
Cfr13I	GGNCC	2 cut(s)	284, 416
ClaI	ATCGAT	1 cut(s)	210
Csp6I	GTAC	1 cut(s)	561
CviAII	CATG	7 cut(s)	462, 474, 533, 558, 564, 602, 638
CviQI	GTAC	1 cut(s)	561
DdeI	CTNAG	2 cut(s)	237, 270
DpnI	GATC	1 cut(s)	206
DpnII	GATC	1 cut(s)	204
Eam1104I	CTCTTC	1 cut(s)	376
EarI	CTCTTC	1 cut(s)	376
Eco130I	CCWWGG	1 cut(s)	419
Eco32I	GATATC	1 cut(s)	214
Eco47I	GGWCC	1 cut(s)	284
EcoO109I	RGGNCCY	1 cut(s)	284
EcoRV	GATATC	1 cut(s)	214
EcoT14I	CCWWGG	1 cut(s)	419
ErhI	CCWWGG	1 cut(s)	419
FaeI	CATG	7 cut(s)	465, 477, 536, 561, 567, 605, 641
FalI	AAGNNNNNCTT	2 cut(s)	311, 343
FaqI	GGGAC	1 cut(s)	678
FatI	CATG	7 cut(s)	461, 473, 532, 557, 563, 601, 637
FauNDI	CATATG	1 cut(s)	608
FbaI	TGATCA	1 cut(s)	204
Fnu4HI	GCNGC	3 cut(s)	45, 297, 526
FokI	GGATG	3 cut(s)	364, 690, 734
Fsp4HI	GCNGC	3 cut(s)	45, 297, 526
FspBI	CTAG	4 cut(s)	312, 420, 672, 786
GluI	GCNGC	3 cut(s)	45, 297, 526
GsaI	CCCAGC	1 cut(s)	717
GsuI	CTGGAG	1 cut(s)	528
HaeIII	GGCC	1 cut(s)	417
HapII	CCGG	1 cut(s)	809
Hin1II	CATG	7 cut(s)	465, 477, 536, 561, 567, 605, 641
HindIII	AAGCTT	1 cut(s)	36
HinfI	GANTC	2 cut(s)	6, 798
HpaII	CCGG	1 cut(s)	809
HphI	GGTGA	2 cut(s)	497, 824
Hpy166II	GTNNAC	2 cut(s)	488, 541
Hpy188I	TCNGA	1 cut(s)	271
Hpy188III	TCNNGA	3 cut(s)	10, 278, 328
Hpy8I	GTNNAC	2 cut(s)	488, 541
HpyAV	CCTTC	2 cut(s)	275, 678
HpyCH4III	ACNGT	1 cut(s)	692
HpyCH4V	TGCA	5 cut(s)	66, 263, 292, 389, 753
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 611, 638
HpyF3I	CTNAG	2 cut(s)	237, 270
Hsp92II	CATG	7 cut(s)	465, 477, 536, 561, 567, 605, 641
Ksp22I	TGATCA	1 cut(s)	204
Kzo9I	GATC	1 cut(s)	204
Lsp1109I	GCAGC	2 cut(s)	308, 537
MaeI	CTAG	4 cut(s)	312, 420, 672, 786
MalI	GATC	1 cut(s)	206
MboI	GATC	1 cut(s)	204
MboII	GAAGA	4 cut(s)	355, 393, 442, 792
MfeI	CAATTG	1 cut(s)	578
MluCI	AATT	3 cut(s)	48, 501, 578
MnlI	CCTC	5 cut(s)	503, 540, 564, 676, 712
MseI	TTAA	2 cut(s)	426, 662
MslI	CAYNNNNRTG	2 cut(s)	81, 562
MspI	CCGG	1 cut(s)	809
MspR9I	CCNGG	1 cut(s)	810
MunI	CAATTG	1 cut(s)	578
MwoI	GCNNNNNNNGC	3 cut(s)	44, 611, 638
NciI	CCSGG	1 cut(s)	810
NdeI	CATATG	1 cut(s)	608
NdeII	GATC	1 cut(s)	204
NlaIII	CATG	7 cut(s)	465, 477, 536, 561, 567, 605, 641
NlaIV	GGNNCC	1 cut(s)	807
NmeAIII	GCCGAG	1 cut(s)	145
NspI	RCATGY	4 cut(s)	536, 561, 567, 641
PciI	ACATGT	2 cut(s)	557, 563
PfeI	GAWTC	2 cut(s)	6, 798
PkrI	GCNGC	3 cut(s)	46, 298, 527
PpuMI	RGGWCCY	1 cut(s)	284
PscI	ACATGT	2 cut(s)	557, 563
Psp5II	RGGWCCY	1 cut(s)	284
PspFI	CCCAGC	1 cut(s)	713
PspN4I	GGNNCC	1 cut(s)	807
PspPI	GGNCC	2 cut(s)	284, 416
PspPPI	RGGWCCY	1 cut(s)	284
RsaI	GTAC	1 cut(s)	562
RsaNI	GTAC	1 cut(s)	561
RseI	CAYNNNNRTG	2 cut(s)	81, 562
SaqAI	TTAA	2 cut(s)	426, 662
SatI	GCNGC	3 cut(s)	45, 297, 526
Sau3AI	GATC	1 cut(s)	204
Sau96I	GGNCC	2 cut(s)	284, 416
ScrFI	CCNGG	1 cut(s)	810
SetI	ASST	8 cut(s)	40, 289, 301, 447, 575, 595, 778, 787
SinI	GGWCC	1 cut(s)	284
SmiMI	CAYNNNNRTG	2 cut(s)	81, 562
SmlI	CTYRAG	3 cut(s)	338, 491, 544
SmoI	CTYRAG	3 cut(s)	338, 491, 544
Sse9I	AATT	3 cut(s)	48, 501, 578
SsiI	CCGC	1 cut(s)	45
SspMI	CTAG	4 cut(s)	312, 420, 672, 786
StyD4I	CCNGG	1 cut(s)	808
StyI	CCWWGG	1 cut(s)	419
TaaI	ACNGT	1 cut(s)	692
TaqI	TCGA	1 cut(s)	210
TasI	AATT	3 cut(s)	48, 501, 578
TatI	WGTACW	1 cut(s)	560
TauI	GCSGC	1 cut(s)	47
TfiI	GAWTC	2 cut(s)	6, 798
Tru1I	TTAA	2 cut(s)	426, 662
Tru9I	TTAA	2 cut(s)	426, 662
TseI	GCWGC	2 cut(s)	296, 525
TspDTI	ATGAA	3 cut(s)	220, 450, 590
VpaK11BI	GGWCC	1 cut(s)	284
XceI	RCATGY	4 cut(s)	536, 561, 567, 641
XcmI	CCANNNNNNNNNTGG	1 cut(s)	710
XmaJI	CCTAGG	1 cut(s)	419
XspI	CTAG	4 cut(s)	312, 420, 672, 786

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.