MD11G1008900.v1.1

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Forward (+)
739599 .. 743584
3986 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1008900.v1.1.491

Sequence Viewer

Length: 1485 bp
ATGATGCGTGAAAAATGGATTGGAGGCGTGCTTCTCCTTCTAGTTGGCATGTTTACTGATGTACAAGGTGCATTCATAGGGATAAACATTGGGACCGATGTTTCGGACCTTCCATCTGAGACAGATACAGTTGCACTCCTTAAAGCCCATCAAATTACACATGTGCGCCTCTACAATGCTGATGCTCACATACTGAAAGCCCTTTCAAACAGTGGAATTGAAGTAATGGTAGGTATCACAAATGAGGAAGTCCTAAGTGTTGGAGAGTCTTCATCAGCAGCAGCTGCCTGGATTAACAAAAATGTTGCAGCTTATTTGCCCTCAACCAATATTACCGCCATTGCTGTTGGCAGTGAGGTCATTACCTCAATCCCTCATGCTGCGCCAGTTTTGGTCGATGCTATGAACTACCTTCATAAAGCCTTAGTTGCTTCAAACCTAAATTTTCAGGTCAAAGTTTCAACTCCACAATCCATGGATATAATCCCAAAGCCTTTCCCCCCGTCCACTGCCACCTTTAATTACTCATGGGGACACACCATTTACCAAATCCTTCAGTTTATTAAAAACACGAATTCCTATTACATGCTAAATGCGTATCCTTATTATGGTTACACCAATGGGGATGGAATTTTCCCGCTTGATTATGCTCTTTTCCGACCACTTCCCTCTGTCAAGCAGATTGTTGACCCGAACACTGTTTTCCACTATAACAGCATGTTTGATGCTATGGTGGACGCCACCTATTATTCTATAGAGGATTTCAATTTCTCTGGGATCTCTGTTGTTGTCACCGAGACTGGTTGGCCATGGTTTGGCGGATCCAAAGAGCCCGATGCCAACACAGGAAATGCTCAGACCTACACCAATAATTTGATTCGACGAGTTTTAAATGATTCAGGTCCACCCAGCCAGCCAAAGTTGCCCATCAACACGTACATTTACGAGTTGTTCAACGAAGACAAGAGGCCAGGGCCAGTGTCAGAGAAAAACTGGGGTGTGCTGTATACGAATGGGTCTGCTGTGTATCCTTTAAGTTTGAGTGATTCCAGTCAAATTACTGGGAATTCTTCAGGGGTTTTCTGCACGGCGAAAGCTAATGCAGATCCAGATAAGTTGCAGGATGGCATAAACTGGGCTTGTGGGCAAGGTGGGGCTAACTGCACTCCCATTCAACGAGGGCAGCGGTGTTATCTCCCCGATACTATTGTAAATCATGCTTCATATGCTTATAATGACTATTATCAAAAGATGAAAAGTGCTGGCGGAACATGTGACTTTGATGACACCGCCATAATATCTACTGTTGATCCAAGCTATGGCGCGTGTAAATTTTCCGGAAGTTCTAATTCAAGCAAATTTACGGGACTTACACCAGCGTCAGTTGCACCTTCAACCGCTGTTGGAGGCTGGAGTTCGAATCGACAAGTTTCCAATCTTCAATATCTCATTCCGGCAGCATTTCTCGCATTGCTATTGCTTTGA

Protein Analysis

495

Amino Acids

53.54

Weight (kDa)

5.16

Isoelectric Point (pI)

34.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 26 - 345 7.9e-73 Glycosyl hydrolases family 17
X8 PF07983 361 - 431 1e-19 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1233
AccB7I CCANNNNNTGG 2 cut(s) 815, 1319
AccI GTMKAC 1 cut(s) 1007
AccII CGCG 1 cut(s) 1325
AccIII TCCGGA 1 cut(s) 1337
AciI CCGC 7 cut(s) 336, 638, 819, 1186, 1266, 1290, 1398
AclWI GGATC 5 cut(s) 785, 816, 829, 1100, 1304
AcoI YGGCCR 1 cut(s) 806
AcsI RAATTY 6 cut(s) 442, 574, 630, 1066, 1331, 1358
AcuI CTGAAG 2 cut(s) 539, 1056
AcyI GRCGYC 1 cut(s) 738
AfaI GTAC 2 cut(s) 63, 938
AfiI CCNNNNNNNGG 3 cut(s) 608, 815, 1319
AflIII ACRYGT 3 cut(s) 160, 933, 1271
AjnI CCWGG 2 cut(s) 287, 970
AjuI GAANNNNNNNTTGG 1 cut(s) 35
AluBI AGCT 4 cut(s) 284, 311, 1097, 1317
AluI AGCT 4 cut(s) 284, 311, 1097, 1317
Alw26I GTCTC 2 cut(s) 113, 791
AlwI GGATC 5 cut(s) 785, 816, 829, 1100, 1304
AlwNI CAGNNNCTG 1 cut(s) 284
Aor13HI TCCGGA 1 cut(s) 1337
AoxI GGCC 3 cut(s) 806, 968, 974
ApeKI GCWGC 7 cut(s) 278, 281, 284, 308, 380, 1183, 1457
ApoI RAATTY 6 cut(s) 442, 574, 630, 1066, 1331, 1358
ArsI GACNNNNNNTTYG 2 cut(s) 85, 117
AspLEI GCGC 3 cut(s) 168, 385, 1325
AspS9I GGNCC 4 cut(s) 93, 106, 902, 974
AsuHPI GGTGA 1 cut(s) 784
AsuII TTCGAA 1 cut(s) 1418
AvaII GGWCC 3 cut(s) 93, 106, 902
BaeI ACNNNNGTAYC 2 cut(s) 1194, 1227
BalI TGGCCA 1 cut(s) 808
BamHI GGATCC 1 cut(s) 821
BanII GRGCYC 1 cut(s) 834
BbsI GAAGAC 2 cut(s) 261, 966
BbvI GCAGC 7 cut(s) 271, 290, 293, 320, 367, 1195, 1469
BccI CCATC 5 cut(s) 121, 156, 620, 935, 1118
BceAI ACGGC 1 cut(s) 1104
BciT130I CCWGG 2 cut(s) 289, 972
BciVI GTATCC 2 cut(s) 609, 1038
BcoDI GTCTC 2 cut(s) 113, 791
BfaI CTAG 1 cut(s) 41
BfmI CTRYAG 1 cut(s) 753
BfuI GTATCC 2 cut(s) 609, 1038
BisI GCNGC 7 cut(s) 279, 282, 285, 309, 381, 1184, 1458
BlsI GCNGC 7 cut(s) 280, 283, 286, 310, 382, 1185, 1459
Bme1390I CCNGG 2 cut(s) 289, 972
Bme18I GGWCC 3 cut(s) 93, 106, 902
BmgT120I GGNCC 4 cut(s) 93, 106, 902, 974
BmiI GGNNCC 2 cut(s) 94, 823
BmrFI CCNGG 2 cut(s) 289, 972
BmrI ACTGGG 3 cut(s) 1003, 1071, 1144
BmsI GCATC 4 cut(s) 172, 388, 715, 826
BmuI ACTGGG 3 cut(s) 1003, 1071, 1144
BpiI GAAGAC 2 cut(s) 261, 966
BpmI CTGGAG 1 cut(s) 1432
Bpu14I TTCGAA 1 cut(s) 1418
BsaAI YACGTR 1 cut(s) 936
BsaHI GRCGYC 1 cut(s) 738
BsaJI CCNNGG 3 cut(s) 474, 809, 971
BsaWI WCCGGW 1 cut(s) 1337
Bsc4I CCNNNNNNNGG 3 cut(s) 608, 815, 1319
Bse1I ACTGG 7 cut(s) 386, 805, 977, 998, 1050, 1066, 1139
Bse3DI GCAATG 2 cut(s) 339, 1469
BseAI TCCGGA 1 cut(s) 1337
BseBI CCWGG 2 cut(s) 289, 972
BseDI CCNNGG 3 cut(s) 474, 809, 971
BseGI GGATG 2 cut(s) 631, 1129
BseLI CCNNNNNNNGG 3 cut(s) 608, 815, 1319
BseMI GCAATG 2 cut(s) 339, 1469
BseMII CTCAG 2 cut(s) 108, 869
BseNI ACTGG 7 cut(s) 386, 805, 977, 998, 1050, 1066, 1139
BseXI GCAGC 7 cut(s) 271, 290, 293, 320, 367, 1195, 1469
BseYI CCCAGC 1 cut(s) 908
BsgI GTGCAG 2 cut(s) 1069, 1147
Bsh1236I CGCG 1 cut(s) 1325
BshFI GGCC 3 cut(s) 808, 970, 976
BsiSI CCGG 2 cut(s) 1338, 1454
BslFI GGGAC 3 cut(s) 106, 546, 1380
BslI CCNNNNNNNGG 3 cut(s) 608, 815, 1319
BsmAI GTCTC 2 cut(s) 113, 791
BsmFI GGGAC 3 cut(s) 106, 546, 1380
BsmI GAATGC 1 cut(s) 71
BsnI GGCC 3 cut(s) 808, 970, 976
Bsp119I TTCGAA 1 cut(s) 1418
Bsp1286I GDGCHC 1 cut(s) 834
Bsp13I TCCGGA 1 cut(s) 1337
Bsp1407I TGTACA 1 cut(s) 61
Bsp143I GATC 4 cut(s) 777, 821, 1105, 1309
Bsp19I CCATGG 2 cut(s) 474, 809
BspACI CCGC 7 cut(s) 336, 638, 819, 1186, 1266, 1290, 1398
BspANI GGCC 3 cut(s) 808, 970, 976
BspCNI CTCAG 2 cut(s) 109, 868
BspEI TCCGGA 1 cut(s) 1337
BspFNI CGCG 1 cut(s) 1325
BspLI GGNNCC 2 cut(s) 94, 823
BspPI GGATC 5 cut(s) 785, 816, 829, 1100, 1304
BspT104I TTCGAA 1 cut(s) 1418
BsrDI GCAATG 2 cut(s) 339, 1469
BsrGI TGTACA 1 cut(s) 61
BsrI ACTGG 7 cut(s) 386, 805, 977, 998, 1050, 1066, 1139
BssECI CCNNGG 3 cut(s) 474, 809, 971
BssMI GATC 4 cut(s) 777, 821, 1105, 1309
BssNAI GTATAC 1 cut(s) 1008
BssNI GRCGYC 1 cut(s) 738
BssT1I CCWWGG 2 cut(s) 474, 809
Bst1107I GTATAC 1 cut(s) 1008
Bst2UI CCWGG 2 cut(s) 289, 972
Bst4CI ACNGT 4 cut(s) 130, 212, 700, 1306
BstACI GRCGYC 1 cut(s) 738
BstAPI GCANNNNNTGC 1 cut(s) 284
BstAUI TGTACA 1 cut(s) 61
BstBAI YACGTR 1 cut(s) 936
BstBI TTCGAA 1 cut(s) 1418
BstC8I GCNNGC 3 cut(s) 29, 914, 1264
BstDEI CTNAG 4 cut(s) 117, 254, 424, 855
BstDSI CCRYGG 2 cut(s) 474, 809
BstF5I GGATG 2 cut(s) 631, 1129
BstFNI CGCG 1 cut(s) 1325
BstHHI GCGC 3 cut(s) 168, 385, 1325
BstKTI GATC 4 cut(s) 780, 824, 1108, 1312
BstMAI GTCTC 2 cut(s) 113, 791
BstMBI GATC 4 cut(s) 777, 821, 1105, 1309
BstMWI GCNNNNNNNGC 6 cut(s) 284, 428, 922, 1226, 1385, 1466
BstNI CCWGG 2 cut(s) 289, 972
BstNSI RCATGY 5 cut(s) 52, 164, 589, 721, 1275
BstSCI CCNGG 2 cut(s) 287, 970
BstSFI CTRYAG 1 cut(s) 753
BstUI CGCG 1 cut(s) 1325
BstV1I GCAGC 7 cut(s) 271, 290, 293, 320, 367, 1195, 1469
BstV2I GAAGAC 2 cut(s) 261, 966
BstX2I RGATCY 3 cut(s) 777, 821, 1105
BstYI RGATCY 3 cut(s) 777, 821, 1105
BstZ17I GTATAC 1 cut(s) 1008
BsuI GTATCC 2 cut(s) 609, 1038
BsuRI GGCC 3 cut(s) 808, 970, 976
BtgI CCRYGG 2 cut(s) 474, 809
BtsCI GGATG 2 cut(s) 631, 1129
BtsI GCAGTG 2 cut(s) 358, 507
BtsIMutI CAGTG 5 cut(s) 217, 358, 507, 696, 984
Cac8I GCNNGC 3 cut(s) 29, 914, 1264
CaiI CAGNNNCTG 1 cut(s) 284
CfoI GCGC 3 cut(s) 168, 385, 1325
Cfr13I GGNCC 4 cut(s) 93, 106, 902, 974
CseI GACGC 2 cut(s) 746, 1368
Csp6I GTAC 2 cut(s) 62, 937
CviQI GTAC 2 cut(s) 62, 937
DdeI CTNAG 4 cut(s) 117, 254, 424, 855
DpnI GATC 4 cut(s) 779, 823, 1107, 1311
DpnII GATC 4 cut(s) 777, 821, 1105, 1309
DraI TTTAAA 1 cut(s) 891
EaeI YGGCCR 1 cut(s) 806
EciI GGCGGA 2 cut(s) 834, 1281
Eco130I CCWWGG 2 cut(s) 474, 809
Eco24I GRGCYC 1 cut(s) 834
Eco47I GGWCC 3 cut(s) 93, 106, 902
Eco57I CTGAAG 2 cut(s) 539, 1056
EcoRI GAATTC 2 cut(s) 574, 1066
EcoRII CCWGG 2 cut(s) 287, 970
EcoT14I CCWWGG 2 cut(s) 474, 809
EcoT38I GRGCYC 1 cut(s) 834
ErhI CCWWGG 2 cut(s) 474, 809
FaqI GGGAC 3 cut(s) 106, 546, 1380
FauI CCCGC 1 cut(s) 645
FauNDI CATATG 1 cut(s) 1225
FblI GTMKAC 1 cut(s) 1007
Fnu4HI GCNGC 7 cut(s) 279, 282, 285, 309, 381, 1184, 1458
FokI GGATG 2 cut(s) 638, 1136
FriOI GRGCYC 1 cut(s) 834
Fsp4HI GCNGC 7 cut(s) 279, 282, 285, 309, 381, 1184, 1458
FspBI CTAG 1 cut(s) 41
GlaI GCGC 3 cut(s) 167, 384, 1324
GluI GCNGC 7 cut(s) 279, 282, 285, 309, 381, 1184, 1458
GsaI CCCAGC 1 cut(s) 912
GsuI CTGGAG 1 cut(s) 1432
HaeIII GGCC 3 cut(s) 808, 970, 976
HapII CCGG 2 cut(s) 1338, 1454
HgaI GACGC 2 cut(s) 746, 1368
HhaI GCGC 3 cut(s) 168, 385, 1325
Hin1I GRCGYC 1 cut(s) 738
Hin6I GCGC 3 cut(s) 166, 383, 1323
HinP1I GCGC 3 cut(s) 166, 383, 1323
HincII GTYRAC 1 cut(s) 688
HindII GTYRAC 1 cut(s) 688
HinfI GANTC 5 cut(s) 266, 877, 896, 1046, 1420
HpaII CCGG 2 cut(s) 1338, 1454
HphI GGTGA 1 cut(s) 784
Hpy166II GTNNAC 6 cut(s) 54, 507, 688, 736, 905, 1008
Hpy188I TCNGA 5 cut(s) 106, 118, 659, 858, 985
Hpy188III TCNNGA 2 cut(s) 1109, 1338
Hpy8I GTNNAC 6 cut(s) 54, 507, 688, 736, 905, 1008
Hpy99I CGWCG 1 cut(s) 885
HpyAV CCTTC 5 cut(s) 47, 119, 422, 563, 1401
HpyCH4III ACNGT 4 cut(s) 130, 212, 700, 1306
HpyCH4IV ACGT 1 cut(s) 935
HpyCH4V TGCA 8 cut(s) 71, 134, 308, 1086, 1103, 1120, 1164, 1388
HpyF10VI GCNNNNNNNGC 6 cut(s) 284, 428, 922, 1226, 1385, 1466
HpyF3I CTNAG 4 cut(s) 117, 254, 424, 855
HpySE526I ACGT 1 cut(s) 935
Hsp92I GRCGYC 1 cut(s) 738
HspAI GCGC 3 cut(s) 166, 383, 1323
Kpn2I TCCGGA 1 cut(s) 1337
Kzo9I GATC 4 cut(s) 777, 821, 1105, 1309
Lsp1109I GCAGC 7 cut(s) 271, 290, 293, 320, 367, 1195, 1469
LweI GCATC 4 cut(s) 172, 388, 715, 826
MaeI CTAG 1 cut(s) 41
MaeII ACGT 1 cut(s) 935
MaeIII GTNAC 3 cut(s) 611, 790, 1274
MalI GATC 4 cut(s) 779, 823, 1107, 1311
MboI GATC 4 cut(s) 777, 821, 1105, 1309
MboII GAAGA 4 cut(s) 261, 971, 1062, 1430
MflI RGATCY 3 cut(s) 777, 821, 1105
MhlI GDGCHC 1 cut(s) 834
MlsI TGGCCA 1 cut(s) 808
MluNI TGGCCA 1 cut(s) 808
MlyI GAGTC 1 cut(s) 275
MmeI TCCRAC 3 cut(s) 241, 682, 1384
Mox20I TGGCCA 1 cut(s) 808
MroI TCCGGA 1 cut(s) 1337
MscI TGGCCA 1 cut(s) 808
MseI TTAA 6 cut(s) 141, 294, 519, 564, 890, 1034
Msp20I TGGCCA 1 cut(s) 808
MspA1I CMGCKG 3 cut(s) 284, 1186, 1400
MspI CCGG 2 cut(s) 1338, 1454
MspR9I CCNGG 2 cut(s) 289, 972
Mva1269I GAATGC 1 cut(s) 71
MvaI CCWGG 2 cut(s) 289, 972
MvnI CGCG 1 cut(s) 1325
MwoI GCNNNNNNNGC 6 cut(s) 284, 428, 922, 1226, 1385, 1466
NcoI CCATGG 2 cut(s) 474, 809
NdeI CATATG 1 cut(s) 1225
NdeII GATC 4 cut(s) 777, 821, 1105, 1309
NlaIV GGNNCC 2 cut(s) 94, 823
NmuCI GTSAC 2 cut(s) 790, 1274
NspI RCATGY 5 cut(s) 52, 164, 589, 721, 1275
NspV TTCGAA 1 cut(s) 1418
PciI ACATGT 2 cut(s) 160, 1271
PctI GAATGC 1 cut(s) 71
PfeI GAWTC 4 cut(s) 877, 896, 1046, 1420
PflMI CCANNNNNTGG 2 cut(s) 815, 1319
PkrI GCNGC 7 cut(s) 280, 283, 286, 310, 382, 1185, 1459
PleI GAGTC 1 cut(s) 274
PpsI GAGTC 1 cut(s) 274
Ppu21I YACGTR 1 cut(s) 936
PscI ACATGT 2 cut(s) 160, 1271
PsiI TTATAA 1 cut(s) 1233
Psp6I CCWGG 2 cut(s) 287, 970
PspFI CCCAGC 1 cut(s) 908
PspGI CCWGG 2 cut(s) 287, 970
PspN4I GGNNCC 2 cut(s) 94, 823
PspPI GGNCC 4 cut(s) 93, 106, 902, 974
PstNI CAGNNNCTG 1 cut(s) 284
PsuI RGATCY 3 cut(s) 777, 821, 1105
PvuII CAGCTG 1 cut(s) 284
RsaI GTAC 2 cut(s) 63, 938
RsaNI GTAC 2 cut(s) 62, 937
SaqAI TTAA 6 cut(s) 141, 294, 519, 564, 890, 1034
SatI GCNGC 7 cut(s) 279, 282, 285, 309, 381, 1184, 1458
Sau3AI GATC 4 cut(s) 777, 821, 1105, 1309
Sau96I GGNCC 4 cut(s) 93, 106, 902, 974
SchI GAGTC 1 cut(s) 275
ScrFI CCNGG 2 cut(s) 289, 972
SduI GDGCHC 1 cut(s) 834
SfaNI GCATC 4 cut(s) 172, 388, 715, 826
SfcI CTRYAG 1 cut(s) 753
SfuI TTCGAA 1 cut(s) 1418
SinI GGWCC 3 cut(s) 93, 106, 902
SsiI CCGC 7 cut(s) 336, 638, 819, 1186, 1266, 1290, 1398
SspI AATATT 1 cut(s) 331
SspMI CTAG 1 cut(s) 41
StyD4I CCNGG 2 cut(s) 287, 970
StyI CCWWGG 2 cut(s) 474, 809
TaaI ACNGT 4 cut(s) 130, 212, 700, 1306
TaiI ACGT 1 cut(s) 938
TaqI TCGA 4 cut(s) 396, 880, 1418, 1423
TaqII GACCGA 1 cut(s) 110
TatI WGTACW 1 cut(s) 61
TfiI GAWTC 4 cut(s) 877, 896, 1046, 1420
Tru1I TTAA 6 cut(s) 141, 294, 519, 564, 890, 1034
Tru9I TTAA 6 cut(s) 141, 294, 519, 564, 890, 1034
TscAI CASTG 5 cut(s) 217, 358, 514, 703, 984
TseFI GTSAC 2 cut(s) 790, 1274
TseI GCWGC 7 cut(s) 278, 281, 284, 308, 380, 1183, 1457
Tsp45I GTSAC 2 cut(s) 790, 1274
TspDTI ATGAA 6 cut(s) 64, 261, 404, 419, 1212, 1268
TspRI CASTG 5 cut(s) 217, 358, 514, 703, 984
Van91I CCANNNNNTGG 2 cut(s) 815, 1319
VpaK11BI GGWCC 3 cut(s) 93, 106, 902
XapI RAATTY 6 cut(s) 442, 574, 630, 1066, 1331, 1358
XceI RCATGY 5 cut(s) 52, 164, 589, 721, 1275
XmiI GTMKAC 1 cut(s) 1007
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.