Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8420859.1

Orthogroup ID

OG0004818

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1288

Gene Structure 1288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8420859.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1258 bp

atgaaacttgtaggtgcattcataggggtaaacattggtactgatgtttcagacattccagctgggactgaaatagttgcgatccttatagcccatcaaattacacatgttcgcctttatgatgctgatgctcacatgctgagagccctttcaaacagtggtattgaagtagtggtgggtattacaaatgaggaggtcctagggattggagagtctccatcagtagcagcagcctgggttaataaaaatgtcgcaccttacttaccttccaccaacattacagccattgctgttggcagtgaggttcttacccaaattccacatgcttcgccagttttggtttctgctatgaattacattcacaaagccctggttgctacaaatttaaacttccaggtcaaagtttcaactccacaatccatggatgtaatccctaaggctttccccccctccactgctacctttgatccatcctggaactctacagttttccaaatccttcagtttttgaaaaacacaaattcctattacatgttaaatgcatatccttattatggttacaccaagggtgatggaattttcccaattgattatgctctttttcaaccacttccttctgtcaagcagattgttgatccaaacactttatcccactataacagcatgtttgatgctatggttgatgctacctattattctatagaggccctcaattttactgggatttctgttgttgttacggagagtggttggccatctttgggtggatccaatgaacctgatgcgaatgtggaaaatgctcagacatacacaaacaacttgattcggcgagttttgaatgattcaggtccaccaagcaagccaacttttcctatcaacacttacatttatgagttgttcaatgaagataagaggccagggccagtgtcagagaaaaattggggcgtgctcttcactaatgggtctactgtttatcctttaacttggggtacttccactccaactggaaattcttcagggttgttctgtgtggcaaaaactgatgcagatcctgataagttgcaagatggcttaaactgggcttgtgggcaaggccaagctgattgcactcccattcaacaagggcatgggtgttttcttcccaatacacttgcaaatcatgcttcatatgcgtataatgattactatcaaagaatgcagagtgtcggtggaacatgcgactttgatggcacagctaagacaactactgttgatccca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00500 ko04120 map00500 map04120

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

419

Amino Acids

45.33

Weight (kDa)

4.74

Isoelectric Point (pI)

35.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13560 AT3G13560 AT3G13560 AT3G13560 AT3G13560
fragaria_vesca	FvH4_3g45330 FvH4_3g45330 FvH4_3g45330 FvH4_3g45330 FvH4_3g45330 FvH4_3g45330 FvH4_3g45330
malus_domestica	MD03G1005900.v1.1 MD11G1008900.v1.1
prunus_persica	Prupe.6G005700_v2.0.a1 Prupe.6G005700_v2.0.a1 Prupe.6G005700_v2.0.a1
pyrus_communis	pycom03g00600 pycom11g00580
rosa_chinensis	RchiOBHm_Chr5g0083121
rosa_laevigata	RLG00000037012
rosa_multiflora	Rmu_co8420859.1_g000001 Rmu_sc0002900.1_g000005 Rmu_sc0029325.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001390
rosa_rugosa	Rorug05G0482300
rosa_samantha	Rh5AG532000 Rh5BG559100 Rh5CG582000 Rh5DG567900
rosa_wichuraiana	Rw5G049640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	965
AclWI	GGATC	7 cut(s)	76, 461, 629, 762, 775, 1043, 1247
AcoI	YGGCCR	1 cut(s)	752
AcsI	RAATTY	5 cut(s)	315, 382, 520, 576, 1009
AcuI	CTGAAG	2 cut(s)	485, 999
AfaI	GTAC	2 cut(s)	40, 991
AfiI	CCNNNNNNNGG	2 cut(s)	554, 761
AflIII	ACRYGT	2 cut(s)	106, 531
AgsI	TTSAA	8 cut(s)	153, 167, 408, 511, 605, 838, 901, 1118
AjnI	CCWGG	5 cut(s)	233, 369, 393, 473, 916
AjuI	GAANNNNNNNTTGG	2 cut(s)	994, 1026
AluBI	AGCT	3 cut(s)	62, 1100, 1235
AluI	AGCT	3 cut(s)	62, 1100, 1235
Alw21I	GWGCWC	1 cut(s)	951
Alw26I	GTCTC	1 cut(s)	219
AlwI	GGATC	7 cut(s)	76, 461, 629, 762, 775, 1043, 1247
AlwNI	CAGNNNCTG	1 cut(s)	1052
AoxI	GGCC	5 cut(s)	705, 752, 914, 920, 1093
ApeKI	GCWGC	2 cut(s)	227, 230
ApoI	RAATTY	5 cut(s)	315, 382, 520, 576, 1009
Asp700I	GAANNNNTTC	1 cut(s)	1012
AspA2I	CCTAGG	1 cut(s)	199
AspS9I	GGNCC	4 cut(s)	196, 706, 848, 920
AsuHPI	GGTGA	1 cut(s)	581
AvaII	GGWCC	2 cut(s)	196, 848
AvrII	CCTAGG	1 cut(s)	199
AxyI	CCTNAGG	1 cut(s)	435
BaeI	ACNNNNGTAYC	2 cut(s)	30, 63
BalI	TGGCCA	1 cut(s)	754
BamHI	GGATCC	1 cut(s)	767
BanII	GRGCYC	1 cut(s)	148
Bbv12I	GWGCWC	1 cut(s)	951
BbvI	GCAGC	2 cut(s)	239, 242
BccI	CCATC	7 cut(s)	102, 226, 478, 566, 763, 1061, 1220
BciT130I	CCWGG	5 cut(s)	235, 371, 395, 475, 918
BcoDI	GTCTC	1 cut(s)	219
BfaI	CTAG	1 cut(s)	200
BfmI	CTRYAG	2 cut(s)	483, 699
BisI	GCNGC	2 cut(s)	228, 231
BlnI	CCTAGG	1 cut(s)	199
BlsI	GCNGC	2 cut(s)	229, 232
Bme1390I	CCNGG	5 cut(s)	235, 371, 395, 475, 918
Bme18I	GGWCC	2 cut(s)	196, 848
BmgT120I	GGNCC	4 cut(s)	196, 706, 848, 920
BmiI	GGNNCC	1 cut(s)	769
BmrFI	CCNGG	5 cut(s)	235, 371, 395, 475, 918
BmrI	ACTGGG	2 cut(s)	729, 1087
BmsI	GCATC	6 cut(s)	112, 118, 661, 673, 772, 1033
BmuI	ACTGGG	2 cut(s)	729, 1087
BsaBI	GATNNNNATC	2 cut(s)	1047, 1185
BsaJI	CCNNGG	6 cut(s)	199, 234, 369, 420, 564, 917
BsaXI	ACNNNNNCTCC	2 cut(s)	982, 1012
Bsc4I	CCNNNNNNNGG	2 cut(s)	554, 761
Bse1I	ACTGG	5 cut(s)	332, 724, 923, 1009, 1082
Bse21I	CCTNAGG	1 cut(s)	435
Bse3DI	GCAATG	1 cut(s)	285
Bse8I	GATNNNNATC	2 cut(s)	1047, 1185
BseBI	CCWGG	5 cut(s)	235, 371, 395, 475, 918
BseDI	CCNNGG	6 cut(s)	199, 234, 369, 420, 564, 917
BseGI	GGATG	2 cut(s)	430, 470
BseJI	GATNNNNATC	2 cut(s)	1047, 1185
BseLI	CCNNNNNNNGG	2 cut(s)	554, 761
BseMI	GCAATG	1 cut(s)	285
BseMII	CTCAG	2 cut(s)	131, 815
BseNI	ACTGG	5 cut(s)	332, 724, 923, 1009, 1082
BseRI	GAGGAG	1 cut(s)	206
BseXI	GCAGC	2 cut(s)	239, 242
BseYI	CCCAGC	1 cut(s)	62
BshFI	GGCC	5 cut(s)	707, 754, 916, 922, 1095
BsiHKAI	GWGCWC	1 cut(s)	951
BslFI	GGGAC	1 cut(s)	79
BslI	CCNNNNNNNGG	2 cut(s)	554, 761
BsmAI	GTCTC	1 cut(s)	219
BsmFI	GGGAC	1 cut(s)	79
BsmI	GAATGC	2 cut(s)	17, 1200
BsnI	GGCC	5 cut(s)	707, 754, 916, 922, 1095
Bsp1286I	GDGCHC	2 cut(s)	148, 951
Bsp143I	GATC	6 cut(s)	81, 466, 634, 767, 1048, 1252
Bsp19I	CCATGG	1 cut(s)	420
BspANI	GGCC	5 cut(s)	707, 754, 916, 922, 1095
BspCNI	CTCAG	2 cut(s)	132, 814
BspLI	GGNNCC	1 cut(s)	769
BspPI	GGATC	7 cut(s)	76, 461, 629, 762, 775, 1043, 1247
BspQI	GCTCTTC	1 cut(s)	956
BsrDI	GCAATG	1 cut(s)	285
BsrI	ACTGG	5 cut(s)	332, 724, 923, 1009, 1082
BssECI	CCNNGG	6 cut(s)	199, 234, 369, 420, 564, 917
BssMI	GATC	6 cut(s)	81, 466, 634, 767, 1048, 1252
BssT1I	CCWWGG	3 cut(s)	199, 420, 564
Bst2UI	CCWGG	5 cut(s)	235, 371, 395, 475, 918
Bst4CI	ACNGT	4 cut(s)	158, 487, 970, 1249
Bst6I	CTCTTC	1 cut(s)	956
BstAPI	GCANNNNNTGC	1 cut(s)	1160
BstC8I	GCNNGC	2 cut(s)	860, 947
BstDEI	CTNAG	4 cut(s)	140, 435, 801, 1236
BstDSI	CCRYGG	1 cut(s)	420
BstF5I	GGATG	2 cut(s)	430, 470
BstKTI	GATC	6 cut(s)	84, 469, 637, 770, 1051, 1255
BstMAI	GTCTC	1 cut(s)	219
BstMBI	GATC	6 cut(s)	81, 466, 634, 767, 1048, 1252
BstMWI	GCNNNNNNNGC	3 cut(s)	374, 1160, 1169
BstNI	CCWGG	5 cut(s)	235, 371, 395, 475, 918
BstNSI	RCATGY	6 cut(s)	110, 139, 326, 535, 667, 1218
BstSCI	CCNGG	5 cut(s)	233, 369, 393, 473, 916
BstSFI	CTRYAG	2 cut(s)	483, 699
BstV1I	GCAGC	2 cut(s)	239, 242
BstX2I	RGATCY	2 cut(s)	767, 1048
BstYI	RGATCY	2 cut(s)	767, 1048
Bsu36I	CCTNAGG	1 cut(s)	435
BsuRI	GGCC	5 cut(s)	707, 754, 916, 922, 1095
BtgI	CCRYGG	1 cut(s)	420
BtsCI	GGATG	2 cut(s)	430, 470
BtsI	GCAGTG	2 cut(s)	304, 453
BtsIMutI	CAGTG	4 cut(s)	163, 304, 453, 930
Cac8I	GCNNGC	2 cut(s)	860, 947
CaiI	CAGNNNCTG	1 cut(s)	1052
Cfr13I	GGNCC	4 cut(s)	196, 706, 848, 920
Csp6I	GTAC	2 cut(s)	39, 990
CviAII	CATG	9 cut(s)	107, 136, 323, 421, 532, 664, 1127, 1160, 1215
CviQI	GTAC	2 cut(s)	39, 990
DdeI	CTNAG	4 cut(s)	140, 435, 801, 1236
DpnI	GATC	6 cut(s)	83, 468, 636, 769, 1050, 1254
DpnII	GATC	6 cut(s)	81, 466, 634, 767, 1048, 1252
DraI	TTTAAA	1 cut(s)	387
EaeI	YGGCCR	1 cut(s)	752
Eam1104I	CTCTTC	1 cut(s)	956
EarI	CTCTTC	1 cut(s)	956
Eco130I	CCWWGG	3 cut(s)	199, 420, 564
Eco24I	GRGCYC	1 cut(s)	148
Eco47I	GGWCC	2 cut(s)	196, 848
Eco57I	CTGAAG	2 cut(s)	485, 999
Eco81I	CCTNAGG	1 cut(s)	435
EcoO109I	RGGNCCY	2 cut(s)	196, 706
EcoRII	CCWGG	5 cut(s)	233, 369, 393, 473, 916
EcoT14I	CCWWGG	3 cut(s)	199, 420, 564
EcoT22I	ATGCAT	1 cut(s)	544
EcoT38I	GRGCYC	1 cut(s)	148
ErhI	CCWWGG	3 cut(s)	199, 420, 564
FaeI	CATG	9 cut(s)	110, 139, 326, 424, 535, 667, 1130, 1163, 1218
FaqI	GGGAC	1 cut(s)	79
FatI	CATG	9 cut(s)	106, 135, 322, 420, 531, 663, 1126, 1159, 1214
FauNDI	CATATG	1 cut(s)	1168
FblI	GTMKAC	1 cut(s)	965
Fnu4HI	GCNGC	2 cut(s)	228, 231
FokI	GGATG	2 cut(s)	437, 457
FriOI	GRGCYC	1 cut(s)	148
Fsp4HI	GCNGC	2 cut(s)	228, 231
FspBI	CTAG	1 cut(s)	200
GluI	GCNGC	2 cut(s)	228, 231
GsaI	CCCAGC	1 cut(s)	66
HaeIII	GGCC	5 cut(s)	707, 754, 916, 922, 1095
Hin1II	CATG	9 cut(s)	110, 139, 326, 424, 535, 667, 1130, 1163, 1218
HinfI	GANTC	3 cut(s)	212, 823, 842
HphI	GGTGA	1 cut(s)	581
Hpy166II	GTNNAC	3 cut(s)	31, 851, 966
Hpy188I	TCNGA	3 cut(s)	52, 804, 931
Hpy188III	TCNNGA	1 cut(s)	1052
Hpy8I	GTNNAC	3 cut(s)	31, 851, 966
HpyAV	CCTTC	3 cut(s)	276, 509, 624
HpyCH4III	ACNGT	4 cut(s)	158, 487, 970, 1249
HpyCH4V	TGCA	7 cut(s)	17, 542, 1046, 1063, 1107, 1154, 1198
HpyF10VI	GCNNNNNNNGC	3 cut(s)	374, 1160, 1169
HpyF3I	CTNAG	4 cut(s)	140, 435, 801, 1236
Hsp92II	CATG	9 cut(s)	110, 139, 326, 424, 535, 667, 1130, 1163, 1218
Kzo9I	GATC	6 cut(s)	81, 466, 634, 767, 1048, 1252
LguI	GCTCTTC	1 cut(s)	956
Lsp1109I	GCAGC	2 cut(s)	239, 242
LweI	GCATC	6 cut(s)	112, 118, 661, 673, 772, 1033
MaeI	CTAG	1 cut(s)	200
MaeIII	GTNAC	2 cut(s)	557, 736
MalI	GATC	6 cut(s)	83, 468, 636, 769, 1050, 1254
MboI	GATC	6 cut(s)	81, 466, 634, 767, 1048, 1252
MboII	GAAGA	4 cut(s)	917, 943, 1005, 1130
MfeI	CAATTG	1 cut(s)	585
MflI	RGATCY	2 cut(s)	767, 1048
MhlI	GDGCHC	2 cut(s)	148, 951
MlsI	TGGCCA	1 cut(s)	754
MluNI	TGGCCA	1 cut(s)	754
MlyI	GAGTC	1 cut(s)	221
MmeI	TCCRAC	1 cut(s)	1025
MnlI	CCTC	7 cut(s)	184, 187, 295, 460, 697, 719, 906
Mox20I	TGGCCA	1 cut(s)	754
Mph1103I	ATGCAT	1 cut(s)	544
MroXI	GAANNNNTTC	1 cut(s)	1012
MscI	TGGCCA	1 cut(s)	754
MseI	TTAA	5 cut(s)	240, 386, 536, 980, 1073
Msp20I	TGGCCA	1 cut(s)	754
MspA1I	CMGCKG	1 cut(s)	62
MspR9I	CCNGG	5 cut(s)	235, 371, 395, 475, 918
MunI	CAATTG	1 cut(s)	585
Mva1269I	GAATGC	2 cut(s)	17, 1200
MvaI	CCWGG	5 cut(s)	235, 371, 395, 475, 918
MwoI	GCNNNNNNNGC	3 cut(s)	374, 1160, 1169
NcoI	CCATGG	1 cut(s)	420
NdeI	CATATG	1 cut(s)	1168
NdeII	GATC	6 cut(s)	81, 466, 634, 767, 1048, 1252
NlaIII	CATG	9 cut(s)	110, 139, 326, 424, 535, 667, 1130, 1163, 1218
NlaIV	GGNNCC	1 cut(s)	769
NsiI	ATGCAT	1 cut(s)	544
NspI	RCATGY	6 cut(s)	110, 139, 326, 535, 667, 1218
PciI	ACATGT	2 cut(s)	106, 531
PciSI	GCTCTTC	1 cut(s)	956
PctI	GAATGC	2 cut(s)	17, 1200
PdmI	GAANNNNTTC	1 cut(s)	1012
PfeI	GAWTC	2 cut(s)	823, 842
PfoI	TCCNGGA	1 cut(s)	473
PkrI	GCNGC	2 cut(s)	229, 232
PleI	GAGTC	1 cut(s)	220
PpsI	GAGTC	1 cut(s)	220
PpuMI	RGGWCCY	1 cut(s)	196
PscI	ACATGT	2 cut(s)	106, 531
Psp5II	RGGWCCY	1 cut(s)	196
Psp6I	CCWGG	5 cut(s)	233, 369, 393, 473, 916
PspFI	CCCAGC	1 cut(s)	62
PspGI	CCWGG	5 cut(s)	233, 369, 393, 473, 916
PspN4I	GGNNCC	1 cut(s)	769
PspPI	GGNCC	4 cut(s)	196, 706, 848, 920
PspPPI	RGGWCCY	1 cut(s)	196
PstNI	CAGNNNCTG	1 cut(s)	1052
PsuI	RGATCY	2 cut(s)	767, 1048
PvuII	CAGCTG	1 cut(s)	62
RsaI	GTAC	2 cut(s)	40, 991
RsaNI	GTAC	2 cut(s)	39, 990
SapI	GCTCTTC	1 cut(s)	956
SaqAI	TTAA	5 cut(s)	240, 386, 536, 980, 1073
SatI	GCNGC	2 cut(s)	228, 231
Sau3AI	GATC	6 cut(s)	81, 466, 634, 767, 1048, 1252
Sau96I	GGNCC	4 cut(s)	196, 706, 848, 920
SchI	GAGTC	1 cut(s)	221
ScrFI	CCNGG	5 cut(s)	235, 371, 395, 475, 918
SduI	GDGCHC	2 cut(s)	148, 951
SfaNI	GCATC	6 cut(s)	112, 118, 661, 673, 772, 1033
SfcI	CTRYAG	2 cut(s)	483, 699
SinI	GGWCC	2 cut(s)	196, 848
SspMI	CTAG	1 cut(s)	200
StyD4I	CCNGG	5 cut(s)	233, 369, 393, 473, 916
StyI	CCWWGG	3 cut(s)	199, 420, 564
TaaI	ACNGT	4 cut(s)	158, 487, 970, 1249
TfiI	GAWTC	2 cut(s)	823, 842
Tru1I	TTAA	5 cut(s)	240, 386, 536, 980, 1073
Tru9I	TTAA	5 cut(s)	240, 386, 536, 980, 1073
TscAI	CASTG	4 cut(s)	163, 304, 460, 930
TseI	GCWGC	2 cut(s)	227, 230
TspDTI	ATGAA	6 cut(s)	10, 17, 365, 789, 918, 1155
TspGWI	ACGGA	1 cut(s)	755
TspRI	CASTG	4 cut(s)	163, 304, 460, 930
VpaK11BI	GGWCC	2 cut(s)	196, 848
XapI	RAATTY	5 cut(s)	315, 382, 520, 576, 1009
XceI	RCATGY	6 cut(s)	110, 139, 326, 535, 667, 1218
XmaJI	CCTAGG	1 cut(s)	199
XmiI	GTMKAC	1 cut(s)	965
XmnI	GAANNNNTTC	1 cut(s)	1012
XspI	CTAG	1 cut(s)	200
Zsp2I	ATGCAT	1 cut(s)	544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.