RLG00000037012

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
87539025 .. 87541501
2477 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000037012

Sequence Viewer

Length: 1479 bp
ATGCTTGAAAGACGGATTGCAGGCCTGCTATTGCTCCTAGTCGGAATGTTTACCAATGGATTAGGTGCATTTGTAGGGGTAAACATTGGTACTGATGTTTCAGACATTCCAGCTGGGACTGAAATAGTTGCGATCCTTATAGCCCATCAAATTACACATGTTCGCCTTTATGATGCTGATGCTCACATGCTGAGAGCCCTTTCAAACAGTGGTATTGAAGTAGTGGTAGGTATTACAAATGAGGAGGTCCTAGGGATTGGAGAGTCTCCATCAGTAGCAGCAGCCTGGGTTAATAAAAATGTCGCACCTTACTTACCTTCCACCAACATTACAGCCATTGCTGTTGGCAGTGAGGTTCTTACCCAAATTCCTCATGCTTCACCAGTTTTGGTTTCTGCTATGAATTACATTCACAAAGCCCTGGTTGCTACAAACTTAAACTTCCAGGTCAAAGTTTCAACTCCACAATCCATGGATGTAATCCCTAAGGCTTTCCCCCCCTCCACTGCTACCTTTGATCCATCATGGAACTCTACAGTTTTCCAAATCCTTCAGTTTTTGAAAAACACAAATTCCTATTACATGTTAAATGCATATCCTTATTATGGTTACACCAAGGGTGACGGAATTTTCCCAATTGATTATGCTCTTTTTCAACCACTTCCTTCTGTCAAGCAGATTGTTGATCCAAACACTTTATTGCACTATAACAGCATGTTTGATGCTATGGTTGATGCTACCTATTATTCTATAGAGGGCCTCAATTTTACTGGGATTTCTGTTGTTGTTACGGAGAGTGGTTGGCCATGGTTGGGTGGATCCAATGAACCTGATGCGAATGTGGAAAATGCTCAGACATACACAAACAACTTGATTCGGCGAGTTTTGAATGATTCGGGTCCACCAAGCAAGCCAACTTTTCCTATCAACACTTACATTTATGAGTTGTTCAATGAAGATAAGAGGCCAGGGCCAGTGTCAGAGAAAAATTGGGGTGTGCTCTTCACTAATGGGTCTACTGTGTATCCTTTAACTTTGGGTACTTCCACTCCAACTGGAAATTCTTCAGGGTCGTTCTGTGTGGCGAAAACTGATGCAGATCCTGATAAGTTGCAAGATGGCTTAAACTGGGCTTGTGGGCAAGGCCAAGCTGATTGCACTCCCATTCAACAAGGGCATGGGTGTTTTCTTCCCAATACACTTGTAAATCATGCTTCATATGCGTATAATGATTACTATCAAAGAATGCAGAGTGTCGGTGGAACATGCGACTTTGATGGCACTGCTAAGACAACTACTGTTGATCCCAGTTATGGATCTTGCAAATTTGCAAGTTCTAATTCAAGTACAACCGGGGCACTTACACCAATCTCGGCGACTGCACCTTCAAGCCCTGTTGGAGGCTGGAGTTCAGATCTGAAAGTCTCCCAACTGCAGTATCTCATACCAGGCGCATTTCTTCCATTGTTATTGTTTTGA

Protein Analysis

493

Amino Acids

52.9

Weight (kDa)

4.83

Isoelectric Point (pI)

37.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 25 - 344 3e-71 Glycosyl hydrolases family 17
X8 PF07983 359 - 429 2.4e-20 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1016
AclWI GGATC 8 cut(s) 127, 512, 680, 813, 826, 1094, 1298, 1324
AcoI YGGCCR 1 cut(s) 803
AcsI RAATTY 5 cut(s) 366, 571, 627, 1060, 1325
AcuI CTGAAG 2 cut(s) 536, 1050
AfaI GTAC 3 cut(s) 91, 1042, 1348
AfiI CCNNNNNNNGG 4 cut(s) 605, 812, 1313, 1400
AflIII ACRYGT 2 cut(s) 157, 582
AjnI CCWGG 5 cut(s) 284, 420, 444, 967, 1447
AjuI GAANNNNNNNTTGG 2 cut(s) 1045, 1077
AluBI AGCT 2 cut(s) 113, 1151
AluI AGCT 2 cut(s) 113, 1151
Alw21I GWGCWC 1 cut(s) 1002
Alw26I GTCTC 2 cut(s) 270, 1429
AlwI GGATC 8 cut(s) 127, 512, 680, 813, 826, 1094, 1298, 1324
AlwNI CAGNNNCTG 1 cut(s) 1103
AoxI GGCC 6 cut(s) 22, 757, 803, 965, 971, 1144
ApeKI GCWGC 2 cut(s) 278, 281
ApoI RAATTY 5 cut(s) 366, 571, 627, 1060, 1325
Asp700I GAANNNNTTC 1 cut(s) 1063
AspA2I CCTAGG 1 cut(s) 250
AspLEI GCGC 1 cut(s) 1454
AspS9I GGNCC 4 cut(s) 247, 757, 899, 971
AsuC2I CCSGG 1 cut(s) 1354
AsuHPI GGTGA 2 cut(s) 372, 632
AvaII GGWCC 2 cut(s) 247, 899
AvrII CCTAGG 1 cut(s) 250
AxyI CCTNAGG 1 cut(s) 486
BaeGI GKGCMC 1 cut(s) 1360
BaeI ACNNNNGTAYC 4 cut(s) 81, 114, 1421, 1454
BalI TGGCCA 1 cut(s) 805
BamHI GGATCC 1 cut(s) 818
BanII GRGCYC 1 cut(s) 199
Bbv12I GWGCWC 1 cut(s) 1002
BbvI GCAGC 2 cut(s) 290, 293
BccI CCATC 5 cut(s) 153, 277, 529, 1112, 1271
BciT130I CCWGG 5 cut(s) 286, 422, 446, 969, 1449
BciVI GTATCC 1 cut(s) 1035
BcnI CCSGG 1 cut(s) 1354
BcoDI GTCTC 2 cut(s) 270, 1429
BfaI CTAG 2 cut(s) 38, 251
BfmI CTRYAG 3 cut(s) 534, 750, 1433
BfuI GTATCC 1 cut(s) 1035
BglII AGATCT 1 cut(s) 1414
BisI GCNGC 2 cut(s) 279, 282
BlnI CCTAGG 1 cut(s) 250
BlsI GCNGC 2 cut(s) 280, 283
Bme1390I CCNGG 6 cut(s) 286, 422, 446, 969, 1354, 1449
Bme18I GGWCC 2 cut(s) 247, 899
BmgT120I GGNCC 4 cut(s) 247, 757, 899, 971
BmiI GGNNCC 2 cut(s) 820, 900
BmrFI CCNGG 6 cut(s) 286, 422, 446, 969, 1354, 1449
BmrI ACTGGG 3 cut(s) 780, 1138, 1302
BmsI GCATC 6 cut(s) 163, 169, 712, 724, 823, 1084
BmuI ACTGGG 3 cut(s) 780, 1138, 1302
BpmI CTGGAG 1 cut(s) 1426
BpuMI CCSGG 1 cut(s) 1354
BsaBI GATNNNNATC 2 cut(s) 1098, 1236
BsaJI CCNNGG 8 cut(s) 250, 285, 420, 471, 615, 806, 968, 1353
BsaXI ACNNNNNCTCC 2 cut(s) 1033, 1063
Bsc4I CCNNNNNNNGG 4 cut(s) 605, 812, 1313, 1400
Bse1I ACTGG 6 cut(s) 383, 775, 974, 1060, 1133, 1308
Bse21I CCTNAGG 1 cut(s) 486
Bse3DI GCAATG 1 cut(s) 336
Bse8I GATNNNNATC 2 cut(s) 1098, 1236
BseBI CCWGG 5 cut(s) 286, 422, 446, 969, 1449
BseDI CCNNGG 8 cut(s) 250, 285, 420, 471, 615, 806, 968, 1353
BseGI GGATG 1 cut(s) 481
BseJI GATNNNNATC 2 cut(s) 1098, 1236
BseLI CCNNNNNNNGG 4 cut(s) 605, 812, 1313, 1400
BseMI GCAATG 1 cut(s) 336
BseMII CTCAG 2 cut(s) 182, 866
BseNI ACTGG 6 cut(s) 383, 775, 974, 1060, 1133, 1308
BseRI GAGGAG 1 cut(s) 257
BseSI GKGCMC 1 cut(s) 1360
BseXI GCAGC 2 cut(s) 290, 293
BseYI CCCAGC 1 cut(s) 113
BsgI GTGCAG 1 cut(s) 1365
BshFI GGCC 6 cut(s) 24, 759, 805, 967, 973, 1146
BsiHKAI GWGCWC 1 cut(s) 1002
BsiSI CCGG 1 cut(s) 1353
BslFI GGGAC 1 cut(s) 130
BslI CCNNNNNNNGG 4 cut(s) 605, 812, 1313, 1400
BsmAI GTCTC 2 cut(s) 270, 1429
BsmFI GGGAC 1 cut(s) 130
BsmI GAATGC 1 cut(s) 1251
BsnI GGCC 6 cut(s) 24, 759, 805, 967, 973, 1146
Bsp1286I GDGCHC 3 cut(s) 199, 1002, 1360
Bsp143I GATC 8 cut(s) 132, 517, 685, 818, 1099, 1303, 1316, 1414
Bsp19I CCATGG 2 cut(s) 471, 806
BspANI GGCC 6 cut(s) 24, 759, 805, 967, 973, 1146
BspCNI CTCAG 2 cut(s) 183, 865
BspLI GGNNCC 2 cut(s) 820, 900
BspMAI CTGCAG 1 cut(s) 1437
BspPI GGATC 8 cut(s) 127, 512, 680, 813, 826, 1094, 1298, 1324
BspQI GCTCTTC 1 cut(s) 1007
BsrDI GCAATG 1 cut(s) 336
BsrI ACTGG 6 cut(s) 383, 775, 974, 1060, 1133, 1308
BssECI CCNNGG 8 cut(s) 250, 285, 420, 471, 615, 806, 968, 1353
BssMI GATC 8 cut(s) 132, 517, 685, 818, 1099, 1303, 1316, 1414
BssT1I CCWWGG 4 cut(s) 250, 471, 615, 806
Bst2UI CCWGG 5 cut(s) 286, 422, 446, 969, 1449
Bst4CI ACNGT 4 cut(s) 209, 538, 1021, 1300
Bst6I CTCTTC 1 cut(s) 1007
BstC8I GCNNGC 3 cut(s) 22, 26, 911
BstDEI CTNAG 4 cut(s) 191, 486, 852, 1287
BstDSI CCRYGG 2 cut(s) 471, 806
BstENI CCTNNNNNAGG 1 cut(s) 1398
BstF5I GGATG 1 cut(s) 481
BstHHI GCGC 1 cut(s) 1454
BstKTI GATC 8 cut(s) 135, 520, 688, 821, 1102, 1306, 1319, 1417
BstMAI GTCTC 2 cut(s) 270, 1429
BstMBI GATC 8 cut(s) 132, 517, 685, 818, 1099, 1303, 1316, 1414
BstMWI GCNNNNNNNGC 2 cut(s) 425, 1220
BstNI CCWGG 5 cut(s) 286, 422, 446, 969, 1449
BstNSI RCATGY 5 cut(s) 161, 190, 586, 718, 1269
BstSCI CCNGG 6 cut(s) 284, 420, 444, 967, 1352, 1447
BstSFI CTRYAG 3 cut(s) 534, 750, 1433
BstSLI GKGCMC 1 cut(s) 1360
BstV1I GCAGC 2 cut(s) 290, 293
BstX2I RGATCY 4 cut(s) 818, 1099, 1316, 1414
BstYI RGATCY 4 cut(s) 818, 1099, 1316, 1414
Bsu36I CCTNAGG 1 cut(s) 486
BsuI GTATCC 1 cut(s) 1035
BsuRI GGCC 6 cut(s) 24, 759, 805, 967, 973, 1146
BtgI CCRYGG 2 cut(s) 471, 806
BtsCI GGATG 1 cut(s) 481
BtsI GCAGTG 3 cut(s) 355, 504, 1281
BtsIMutI CAGTG 5 cut(s) 214, 355, 504, 981, 1281
Cac8I GCNNGC 3 cut(s) 22, 26, 911
CaiI CAGNNNCTG 1 cut(s) 1103
CfoI GCGC 1 cut(s) 1454
Cfr13I GGNCC 4 cut(s) 247, 757, 899, 971
Csp6I GTAC 3 cut(s) 90, 1041, 1347
CviQI GTAC 3 cut(s) 90, 1041, 1347
DdeI CTNAG 4 cut(s) 191, 486, 852, 1287
DpnI GATC 8 cut(s) 134, 519, 687, 820, 1101, 1305, 1318, 1416
DpnII GATC 8 cut(s) 132, 517, 685, 818, 1099, 1303, 1316, 1414
EaeI YGGCCR 1 cut(s) 803
Eam1104I CTCTTC 1 cut(s) 1007
EarI CTCTTC 1 cut(s) 1007
Eco130I CCWWGG 4 cut(s) 250, 471, 615, 806
Eco147I AGGCCT 1 cut(s) 24
Eco24I GRGCYC 1 cut(s) 199
Eco47I GGWCC 2 cut(s) 247, 899
Eco57I CTGAAG 2 cut(s) 536, 1050
Eco81I CCTNAGG 1 cut(s) 486
EcoNI CCTNNNNNAGG 1 cut(s) 1398
EcoO109I RGGNCCY 2 cut(s) 247, 757
EcoRII CCWGG 5 cut(s) 284, 420, 444, 967, 1447
EcoT14I CCWWGG 4 cut(s) 250, 471, 615, 806
EcoT22I ATGCAT 1 cut(s) 595
EcoT38I GRGCYC 1 cut(s) 199
ErhI CCWWGG 4 cut(s) 250, 471, 615, 806
FaqI GGGAC 1 cut(s) 130
FauNDI CATATG 1 cut(s) 1219
FblI GTMKAC 1 cut(s) 1016
Fnu4HI GCNGC 2 cut(s) 279, 282
FokI GGATG 1 cut(s) 488
FriOI GRGCYC 1 cut(s) 199
Fsp4HI GCNGC 2 cut(s) 279, 282
FspBI CTAG 2 cut(s) 38, 251
GlaI GCGC 1 cut(s) 1453
GluI GCNGC 2 cut(s) 279, 282
GsaI CCCAGC 1 cut(s) 117
GsuI CTGGAG 1 cut(s) 1426
HaeIII GGCC 6 cut(s) 24, 759, 805, 967, 973, 1146
HapII CCGG 1 cut(s) 1353
HhaI GCGC 1 cut(s) 1454
Hin6I GCGC 1 cut(s) 1452
HinP1I GCGC 1 cut(s) 1452
HinfI GANTC 3 cut(s) 263, 874, 893
HpaII CCGG 1 cut(s) 1353
HphI GGTGA 2 cut(s) 372, 632
Hpy166II GTNNAC 4 cut(s) 51, 82, 902, 1017
Hpy188I TCNGA 6 cut(s) 44, 103, 855, 982, 1414, 1419
Hpy188III TCNNGA 1 cut(s) 1103
Hpy8I GTNNAC 4 cut(s) 51, 82, 902, 1017
HpyAV CCTTC 4 cut(s) 327, 560, 675, 1395
HpyCH4III ACNGT 4 cut(s) 209, 538, 1021, 1300
HpyF10VI GCNNNNNNNGC 2 cut(s) 425, 1220
HpyF3I CTNAG 4 cut(s) 191, 486, 852, 1287
HspAI GCGC 1 cut(s) 1452
Kzo9I GATC 8 cut(s) 132, 517, 685, 818, 1099, 1303, 1316, 1414
LguI GCTCTTC 1 cut(s) 1007
LmnI GCTCC 1 cut(s) 39
Lsp1109I GCAGC 2 cut(s) 290, 293
LweI GCATC 6 cut(s) 163, 169, 712, 724, 823, 1084
MaeI CTAG 2 cut(s) 38, 251
MaeIII GTNAC 3 cut(s) 608, 620, 787
MalI GATC 8 cut(s) 134, 519, 687, 820, 1101, 1305, 1318, 1416
MboI GATC 8 cut(s) 132, 517, 685, 818, 1099, 1303, 1316, 1414
MboII GAAGA 5 cut(s) 968, 994, 1056, 1181, 1451
MfeI CAATTG 1 cut(s) 636
MflI RGATCY 4 cut(s) 818, 1099, 1316, 1414
MhlI GDGCHC 3 cut(s) 199, 1002, 1360
MlsI TGGCCA 1 cut(s) 805
MluNI TGGCCA 1 cut(s) 805
MlyI GAGTC 1 cut(s) 272
MmeI TCCRAC 3 cut(s) 22, 1076, 1378
MnlI CCTC 9 cut(s) 235, 238, 346, 381, 511, 748, 770, 957, 1394
Mox20I TGGCCA 1 cut(s) 805
Mph1103I ATGCAT 1 cut(s) 595
MroXI GAANNNNTTC 1 cut(s) 1063
MscI TGGCCA 1 cut(s) 805
MseI TTAA 5 cut(s) 291, 437, 587, 1031, 1124
Msp20I TGGCCA 1 cut(s) 805
MspA1I CMGCKG 1 cut(s) 113
MspI CCGG 1 cut(s) 1353
MspR9I CCNGG 6 cut(s) 286, 422, 446, 969, 1354, 1449
MunI CAATTG 1 cut(s) 636
Mva1269I GAATGC 1 cut(s) 1251
MvaI CCWGG 5 cut(s) 286, 422, 446, 969, 1449
MwoI GCNNNNNNNGC 2 cut(s) 425, 1220
NciI CCSGG 1 cut(s) 1354
NcoI CCATGG 2 cut(s) 471, 806
NdeI CATATG 1 cut(s) 1219
NdeII GATC 8 cut(s) 132, 517, 685, 818, 1099, 1303, 1316, 1414
NlaIV GGNNCC 2 cut(s) 820, 900
NmeAIII GCCGAG 1 cut(s) 1352
NmuCI GTSAC 1 cut(s) 620
NsiI ATGCAT 1 cut(s) 595
NspI RCATGY 5 cut(s) 161, 190, 586, 718, 1269
PceI AGGCCT 1 cut(s) 24
PciI ACATGT 2 cut(s) 157, 582
PciSI GCTCTTC 1 cut(s) 1007
PctI GAATGC 1 cut(s) 1251
PdmI GAANNNNTTC 1 cut(s) 1063
PfeI GAWTC 2 cut(s) 874, 893
PkrI GCNGC 2 cut(s) 280, 283
PleI GAGTC 1 cut(s) 271
PpsI GAGTC 1 cut(s) 271
PpuMI RGGWCCY 1 cut(s) 247
PscI ACATGT 2 cut(s) 157, 582
Psp5II RGGWCCY 1 cut(s) 247
Psp6I CCWGG 5 cut(s) 284, 420, 444, 967, 1447
PspFI CCCAGC 1 cut(s) 113
PspGI CCWGG 5 cut(s) 284, 420, 444, 967, 1447
PspN4I GGNNCC 2 cut(s) 820, 900
PspPI GGNCC 4 cut(s) 247, 757, 899, 971
PspPPI RGGWCCY 1 cut(s) 247
PstI CTGCAG 1 cut(s) 1437
PstNI CAGNNNCTG 1 cut(s) 1103
PsuI RGATCY 4 cut(s) 818, 1099, 1316, 1414
PvuII CAGCTG 1 cut(s) 113
RsaI GTAC 3 cut(s) 91, 1042, 1348
RsaNI GTAC 3 cut(s) 90, 1041, 1347
SapI GCTCTTC 1 cut(s) 1007
SaqAI TTAA 5 cut(s) 291, 437, 587, 1031, 1124
SatI GCNGC 2 cut(s) 279, 282
Sau3AI GATC 8 cut(s) 132, 517, 685, 818, 1099, 1303, 1316, 1414
Sau96I GGNCC 4 cut(s) 247, 757, 899, 971
SchI GAGTC 1 cut(s) 272
ScrFI CCNGG 6 cut(s) 286, 422, 446, 969, 1354, 1449
SduI GDGCHC 3 cut(s) 199, 1002, 1360
SfaNI GCATC 6 cut(s) 163, 169, 712, 724, 823, 1084
SfcI CTRYAG 3 cut(s) 534, 750, 1433
SinI GGWCC 2 cut(s) 247, 899
SseBI AGGCCT 1 cut(s) 24
SspMI CTAG 2 cut(s) 38, 251
StuI AGGCCT 1 cut(s) 24
StyD4I CCNGG 6 cut(s) 284, 420, 444, 967, 1352, 1447
StyI CCWWGG 4 cut(s) 250, 471, 615, 806
TaaI ACNGT 4 cut(s) 209, 538, 1021, 1300
TatI WGTACW 1 cut(s) 1346
TfiI GAWTC 2 cut(s) 874, 893
Tru1I TTAA 5 cut(s) 291, 437, 587, 1031, 1124
Tru9I TTAA 5 cut(s) 291, 437, 587, 1031, 1124
TscAI CASTG 5 cut(s) 214, 355, 511, 981, 1288
TseFI GTSAC 1 cut(s) 620
TseI GCWGC 2 cut(s) 278, 281
Tsp45I GTSAC 1 cut(s) 620
TspDTI ATGAA 4 cut(s) 416, 840, 969, 1206
TspGWI ACGGA 3 cut(s) 28, 639, 806
TspRI CASTG 5 cut(s) 214, 355, 511, 981, 1288
VpaK11BI GGWCC 2 cut(s) 247, 899
XagI CCTNNNNNAGG 1 cut(s) 1398
XapI RAATTY 5 cut(s) 366, 571, 627, 1060, 1325
XceI RCATGY 5 cut(s) 161, 190, 586, 718, 1269
XmaJI CCTAGG 1 cut(s) 250
XmiI GTMKAC 1 cut(s) 1016
XmnI GAANNNNTTC 1 cut(s) 1063
XspI CTAG 2 cut(s) 38, 251
Zsp2I ATGCAT 1 cut(s) 595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.