MD03G1005900.v1.1

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Forward (+)
476510 .. 480655
4146 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1005900.v1.1.491

Sequence Viewer

Length: 1485 bp
ATGATGCGTGGAAAATGGATTGGAGGCATGATTCTCCTCCTGGTTGGCATGTTTACCAATGTACTAGGTTCATTCATAGGGATAAACATTGGGACCGACGTTTCGGACCTTCCATCTGAGACAGATACGGTTGCACTCCTTAAAGCCCATCAAATTACACATGTGCGCCTCTACAATGCTGATGCTCACATGCTGAAAGCCCTTTCAAACAGCGGAATTGAAGTAATGGTAGGTGTCACAAATGAGGAAGTCCTAGGGATTGGAGAGTCTGCATCGGCAGCAGCTGCCTGGATTAACAAAAATGTGGCGGCTTATTTGCCTTCAACCAATATTACCGCCATTGCTGTTGGCAGTGAGGTCATTACCACAATCCCTAATGCCGCACCAGTTTTGGTTTCTGCTATGAATTACCTTCATAAAGCCTTAGTTGCGTCAAACCTAAATTTTCAGATCAAAGTTTCGACTCCACAATCCATGGATATAATCCCAAAGCCTTTCCCCCCGTCCACTGCCACATTTAATTACTCATGGGGACCTACCATTTACCGAATCCTTCAGTTTATTAAAAACACTAATTCCTATTACATGCTAAATGCCTATCCTTATTATGGTTACACCAGTGGGGACGGAATTTTTCCGCTTGATTATGCTCTTTTCCGACCCCTTCCCTCTGTCAAGCAGATTGTTGACCCGAACACTCTTTTCCACTATAATAGCATGTTTGATGCTATGGTGGACGCCACCTATTATTCTATAGAGGATTTCAATTTCTCTGGGATCTCTGTTGTTGTCACCGAGACTGGCTGGCCATGGTTTGGCGGATCCAAAGAGCCTGATGCCAACACGGGAAATGCTCAGACCTACACTAATAATTTGATTCAACGAGTGTTAAATGGTTCGGGTCCGCCCAGCCAGCCAAAGTTGCCCATCAACACGTACATTTACGAGTTGTTCAACGAAGATCAGAGGCCAGGGCCAGTGTCAGAGAAAAACTGGGGTGTGTTCTATACAAATGGGTCTGCTGTATATCCTTTAAGTTTGAATGATTCCAATCAAATTACTGGGAATTCTTCAGGGGTTTTCTGTGTGGCAAAAGCTGATGCAGATCCAGATAAGTTGCAGGATGGCTTAAACTGGGCTTGTGGGCAAGGCGGGGCTAACTGCACTCCCATTCAAAAAGGGCAGCGGTGTTATCTCCCCGATTCTATTGTAAATCATGCTTCATATGCTTTTAATGACTATTATCAAAAGATGCAAAGTGCTGGCGGAACATGTGACTTTGATGGCACTGCCATGACAACCACTGTTGATCCAAGCCATGGCGCGTGCAAATTTTCTGGAAGTTCTAATTCAAGCACATTTACGGGACTTACACCAGCAGCAATTGCACCTTCAAGCGCCGTTGGAGGCTGGAGTTCGAATCTACAAGTTTCCAATCTTCAATATCTCATGCCGGCTGCATTTCTTGTACTGCTTTTGCTTTGA

Protein Analysis

495

Amino Acids

53.26

Weight (kDa)

5.03

Isoelectric Point (pI)

32.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 26 - 345 1.5e-74 Glycosyl hydrolases family 17
X8 PF07983 361 - 432 7.4e-22 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 815, 1319
AccII CGCG 1 cut(s) 1325
AclWI GGATC 5 cut(s) 785, 816, 829, 1100, 1304
AcoI YGGCCR 1 cut(s) 806
AcsI RAATTY 4 cut(s) 442, 630, 1066, 1331
AcuI CTGAAG 2 cut(s) 539, 1056
AcyI GRCGYC 1 cut(s) 738
AfaI GTAC 3 cut(s) 63, 938, 1470
AfiI CCNNNNNNNGG 3 cut(s) 608, 815, 1319
AflIII ACRYGT 3 cut(s) 160, 933, 1271
AjnI CCWGG 3 cut(s) 39, 287, 970
AluBI AGCT 2 cut(s) 284, 1097
AluI AGCT 2 cut(s) 284, 1097
Alw26I GTCTC 2 cut(s) 113, 791
AlwI GGATC 5 cut(s) 785, 816, 829, 1100, 1304
AlwNI CAGNNNCTG 1 cut(s) 284
AoxI GGCC 3 cut(s) 806, 968, 974
ApeKI GCWGC 6 cut(s) 278, 281, 284, 1183, 1379, 1457
ApoI RAATTY 4 cut(s) 442, 630, 1066, 1331
ArsI GACNNNNNNTTYG 2 cut(s) 85, 117
AspA2I CCTAGG 1 cut(s) 253
AspLEI GCGC 3 cut(s) 168, 1325, 1400
AspS9I GGNCC 5 cut(s) 93, 106, 533, 902, 974
AsuHPI GGTGA 1 cut(s) 784
AsuII TTCGAA 1 cut(s) 1418
AvaII GGWCC 4 cut(s) 93, 106, 533, 902
AvrII CCTAGG 1 cut(s) 253
BalI TGGCCA 1 cut(s) 808
BamHI GGATCC 1 cut(s) 821
BbvI GCAGC 6 cut(s) 271, 290, 293, 1195, 1391, 1444
BccI CCATC 5 cut(s) 121, 156, 935, 1118, 1277
BceAI ACGGC 1 cut(s) 1385
BciT130I CCWGG 3 cut(s) 41, 289, 972
BcoDI GTCTC 2 cut(s) 113, 791
BfaI CTAG 2 cut(s) 65, 254
BfmI CTRYAG 1 cut(s) 753
BfoI RGCGCY 1 cut(s) 1401
BisI GCNGC 8 cut(s) 279, 282, 285, 309, 381, 1184, 1380, 1458
BlnI CCTAGG 1 cut(s) 253
BlsI GCNGC 8 cut(s) 280, 283, 286, 310, 382, 1185, 1381, 1459
Bme1390I CCNGG 3 cut(s) 41, 289, 972
Bme18I GGWCC 4 cut(s) 93, 106, 533, 902
BmgT120I GGNCC 5 cut(s) 93, 106, 533, 902, 974
BmiI GGNNCC 4 cut(s) 94, 534, 823, 903
BmrFI CCNGG 3 cut(s) 41, 289, 972
BmrI ACTGGG 3 cut(s) 1003, 1071, 1144
BmsI GCATC 6 cut(s) 172, 281, 715, 826, 1090, 1242
BmuI ACTGGG 3 cut(s) 1003, 1071, 1144
BpmI CTGGAG 1 cut(s) 1432
Bpu14I TTCGAA 1 cut(s) 1418
BsaAI YACGTR 1 cut(s) 936
BsaBI GATNNNNATC 2 cut(s) 1050, 1104
BsaHI GRCGYC 1 cut(s) 738
BsaJI CCNNGG 5 cut(s) 253, 474, 809, 971, 1318
Bsc4I CCNNNNNNNGG 3 cut(s) 608, 815, 1319
Bse118I RCCGGY 1 cut(s) 1453
Bse1I ACTGG 7 cut(s) 386, 618, 805, 977, 998, 1066, 1139
Bse3DI GCAATG 1 cut(s) 339
Bse8I GATNNNNATC 2 cut(s) 1050, 1104
BseBI CCWGG 3 cut(s) 41, 289, 972
BseDI CCNNGG 5 cut(s) 253, 474, 809, 971, 1318
BseGI GGATG 1 cut(s) 1129
BseJI GATNNNNATC 2 cut(s) 1050, 1104
BseLI CCNNNNNNNGG 3 cut(s) 608, 815, 1319
BseMI GCAATG 1 cut(s) 339
BseMII CTCAG 2 cut(s) 108, 869
BseNI ACTGG 7 cut(s) 386, 618, 805, 977, 998, 1066, 1139
BseRI GAGGAG 1 cut(s) 26
BseXI GCAGC 6 cut(s) 271, 290, 293, 1195, 1391, 1444
BseYI CCCAGC 1 cut(s) 908
BsgI GTGCAG 1 cut(s) 1147
Bsh1236I CGCG 1 cut(s) 1325
BshFI GGCC 3 cut(s) 808, 970, 976
BsiSI CCGG 1 cut(s) 1454
BslFI GGGAC 4 cut(s) 106, 546, 638, 1380
BslI CCNNNNNNNGG 3 cut(s) 608, 815, 1319
BsmAI GTCTC 2 cut(s) 113, 791
BsmFI GGGAC 4 cut(s) 106, 546, 638, 1380
BsnI GGCC 3 cut(s) 808, 970, 976
Bsp119I TTCGAA 1 cut(s) 1418
Bsp143I GATC 6 cut(s) 450, 777, 821, 961, 1105, 1309
Bsp19I CCATGG 3 cut(s) 474, 809, 1318
BspANI GGCC 3 cut(s) 808, 970, 976
BspCNI CTCAG 2 cut(s) 109, 868
BspFNI CGCG 1 cut(s) 1325
BspLI GGNNCC 4 cut(s) 94, 534, 823, 903
BspPI GGATC 5 cut(s) 785, 816, 829, 1100, 1304
BspT104I TTCGAA 1 cut(s) 1418
BsrDI GCAATG 1 cut(s) 339
BsrFI RCCGGY 1 cut(s) 1453
BsrI ACTGG 7 cut(s) 386, 618, 805, 977, 998, 1066, 1139
BssAI RCCGGY 1 cut(s) 1453
BssECI CCNNGG 5 cut(s) 253, 474, 809, 971, 1318
BssMI GATC 6 cut(s) 450, 777, 821, 961, 1105, 1309
BssNI GRCGYC 1 cut(s) 738
BssT1I CCWWGG 4 cut(s) 253, 474, 809, 1318
Bst2UI CCWGG 3 cut(s) 41, 289, 972
Bst4CI ACNGT 2 cut(s) 130, 1306
BstACI GRCGYC 1 cut(s) 738
BstAPI GCANNNNNTGC 2 cut(s) 284, 1385
BstBAI YACGTR 1 cut(s) 936
BstBI TTCGAA 1 cut(s) 1418
BstC8I GCNNGC 5 cut(s) 806, 914, 1264, 1327, 1455
BstDEI CTNAG 3 cut(s) 117, 424, 855
BstDSI CCRYGG 3 cut(s) 474, 809, 1318
BstF5I GGATG 1 cut(s) 1129
BstFNI CGCG 1 cut(s) 1325
BstH2I RGCGCY 1 cut(s) 1401
BstHHI GCGC 3 cut(s) 168, 1325, 1400
BstKTI GATC 6 cut(s) 453, 780, 824, 964, 1108, 1312
BstMAI GTCTC 2 cut(s) 113, 791
BstMBI GATC 6 cut(s) 450, 777, 821, 961, 1105, 1309
BstMWI GCNNNNNNNGC 7 cut(s) 278, 284, 428, 913, 922, 1226, 1385
BstNI CCWGG 3 cut(s) 41, 289, 972
BstNSI RCATGY 6 cut(s) 52, 164, 193, 589, 721, 1275
BstSCI CCNGG 3 cut(s) 39, 287, 970
BstSFI CTRYAG 1 cut(s) 753
BstUI CGCG 1 cut(s) 1325
BstV1I GCAGC 6 cut(s) 271, 290, 293, 1195, 1391, 1444
BstX2I RGATCY 3 cut(s) 777, 821, 1105
BstYI RGATCY 3 cut(s) 777, 821, 1105
BsuRI GGCC 3 cut(s) 808, 970, 976
BtgI CCRYGG 3 cut(s) 474, 809, 1318
BtsCI GGATG 1 cut(s) 1129
BtsI GCAGTG 3 cut(s) 358, 507, 1287
BtsIMutI CAGTG 6 cut(s) 358, 507, 625, 984, 1287, 1302
Cac8I GCNNGC 5 cut(s) 806, 914, 1264, 1327, 1455
CaiI CAGNNNCTG 1 cut(s) 284
CfoI GCGC 3 cut(s) 168, 1325, 1400
Cfr10I RCCGGY 1 cut(s) 1453
Cfr13I GGNCC 5 cut(s) 93, 106, 533, 902, 974
CseI GACGC 2 cut(s) 420, 746
Csp6I GTAC 3 cut(s) 62, 937, 1469
CviQI GTAC 3 cut(s) 62, 937, 1469
DdeI CTNAG 3 cut(s) 117, 424, 855
DpnI GATC 6 cut(s) 452, 779, 823, 963, 1107, 1311
DpnII GATC 6 cut(s) 450, 777, 821, 961, 1105, 1309
EaeI YGGCCR 1 cut(s) 806
EciI GGCGGA 3 cut(s) 834, 894, 1281
Eco130I CCWWGG 4 cut(s) 253, 474, 809, 1318
Eco47I GGWCC 4 cut(s) 93, 106, 533, 902
Eco57I CTGAAG 2 cut(s) 539, 1056
EcoO109I RGGNCCY 1 cut(s) 533
EcoRI GAATTC 1 cut(s) 1066
EcoRII CCWGG 3 cut(s) 39, 287, 970
EcoT14I CCWWGG 4 cut(s) 253, 474, 809, 1318
ErhI CCWWGG 4 cut(s) 253, 474, 809, 1318
FaqI GGGAC 4 cut(s) 106, 546, 638, 1380
FauI CCCGC 1 cut(s) 1145
FauNDI CATATG 1 cut(s) 1225
Fnu4HI GCNGC 8 cut(s) 279, 282, 285, 309, 381, 1184, 1380, 1458
FokI GGATG 1 cut(s) 1136
Fsp4HI GCNGC 8 cut(s) 279, 282, 285, 309, 381, 1184, 1380, 1458
FspBI CTAG 2 cut(s) 65, 254
GlaI GCGC 3 cut(s) 167, 1324, 1399
GluI GCNGC 8 cut(s) 279, 282, 285, 309, 381, 1184, 1380, 1458
GsaI CCCAGC 1 cut(s) 912
GsuI CTGGAG 1 cut(s) 1432
HaeII RGCGCY 1 cut(s) 1401
HaeIII GGCC 3 cut(s) 808, 970, 976
HapII CCGG 1 cut(s) 1454
HgaI GACGC 2 cut(s) 420, 746
HhaI GCGC 3 cut(s) 168, 1325, 1400
Hin1I GRCGYC 1 cut(s) 738
Hin6I GCGC 3 cut(s) 166, 1323, 1398
HinP1I GCGC 3 cut(s) 166, 1323, 1398
HincII GTYRAC 1 cut(s) 688
HindII GTYRAC 1 cut(s) 688
HinfI GANTC 8 cut(s) 31, 266, 463, 549, 877, 1046, 1202, 1420
HpaII CCGG 1 cut(s) 1454
HphI GGTGA 1 cut(s) 784
Hpy166II GTNNAC 4 cut(s) 54, 507, 688, 736
Hpy188I TCNGA 7 cut(s) 106, 118, 450, 659, 858, 966, 985
Hpy188III TCNNGA 2 cut(s) 1109, 1338
Hpy8I GTNNAC 4 cut(s) 54, 507, 688, 736
Hpy99I CGWCG 1 cut(s) 101
HpyAV CCTTC 6 cut(s) 119, 330, 422, 563, 674, 1401
HpyCH4III ACNGT 2 cut(s) 130, 1306
HpyCH4IV ACGT 2 cut(s) 99, 935
HpyCH4V TGCA 9 cut(s) 134, 272, 1103, 1120, 1164, 1255, 1329, 1388, 1460
HpyF10VI GCNNNNNNNGC 7 cut(s) 278, 284, 428, 913, 922, 1226, 1385
HpyF3I CTNAG 3 cut(s) 117, 424, 855
HpySE526I ACGT 2 cut(s) 99, 935
Hsp92I GRCGYC 1 cut(s) 738
HspAI GCGC 3 cut(s) 166, 1323, 1398
KroI GCCGGC 1 cut(s) 1453
KroNI GCCGGC 1 cut(s) 1455
Kzo9I GATC 6 cut(s) 450, 777, 821, 961, 1105, 1309
Lsp1109I GCAGC 6 cut(s) 271, 290, 293, 1195, 1391, 1444
LweI GCATC 6 cut(s) 172, 281, 715, 826, 1090, 1242
MaeI CTAG 2 cut(s) 65, 254
MaeII ACGT 2 cut(s) 99, 935
MaeIII GTNAC 4 cut(s) 235, 611, 790, 1274
MalI GATC 6 cut(s) 452, 779, 823, 963, 1107, 1311
MboI GATC 6 cut(s) 450, 777, 821, 961, 1105, 1309
MboII GAAGA 3 cut(s) 971, 1062, 1430
MfeI CAATTG 1 cut(s) 1383
MflI RGATCY 3 cut(s) 777, 821, 1105
MlsI TGGCCA 1 cut(s) 808
MluNI TGGCCA 1 cut(s) 808
MlyI GAGTC 2 cut(s) 275, 457
MmeI TCCRAC 2 cut(s) 682, 1384
MnlI CCTC 9 cut(s) 17, 47, 179, 238, 349, 679, 751, 960, 1400
Mox20I TGGCCA 1 cut(s) 808
MroNI GCCGGC 1 cut(s) 1453
MscI TGGCCA 1 cut(s) 808
MseI TTAA 8 cut(s) 141, 294, 519, 564, 890, 1034, 1130, 1233
MslI CAYNNNNRTG 1 cut(s) 1292
Msp20I TGGCCA 1 cut(s) 808
MspA1I CMGCKG 3 cut(s) 213, 284, 1186
MspI CCGG 1 cut(s) 1454
MspR9I CCNGG 3 cut(s) 41, 289, 972
MunI CAATTG 1 cut(s) 1383
MvaI CCWGG 3 cut(s) 41, 289, 972
MvnI CGCG 1 cut(s) 1325
MwoI GCNNNNNNNGC 7 cut(s) 278, 284, 428, 913, 922, 1226, 1385
NaeI GCCGGC 1 cut(s) 1455
NcoI CCATGG 3 cut(s) 474, 809, 1318
NdeI CATATG 1 cut(s) 1225
NdeII GATC 6 cut(s) 450, 777, 821, 961, 1105, 1309
NgoMIV GCCGGC 1 cut(s) 1453
NlaIV GGNNCC 4 cut(s) 94, 534, 823, 903
NmuCI GTSAC 3 cut(s) 235, 790, 1274
NspI RCATGY 6 cut(s) 52, 164, 193, 589, 721, 1275
NspV TTCGAA 1 cut(s) 1418
PciI ACATGT 2 cut(s) 160, 1271
PdiI GCCGGC 1 cut(s) 1455
PfeI GAWTC 6 cut(s) 31, 549, 877, 1046, 1202, 1420
PflMI CCANNNNNTGG 2 cut(s) 815, 1319
PkrI GCNGC 8 cut(s) 280, 283, 286, 310, 382, 1185, 1381, 1459
PleI GAGTC 2 cut(s) 274, 457
PpsI GAGTC 2 cut(s) 274, 457
Ppu21I YACGTR 1 cut(s) 936
PpuMI RGGWCCY 1 cut(s) 533
PscI ACATGT 2 cut(s) 160, 1271
Psp5II RGGWCCY 1 cut(s) 533
Psp6I CCWGG 3 cut(s) 39, 287, 970
PspFI CCCAGC 1 cut(s) 908
PspGI CCWGG 3 cut(s) 39, 287, 970
PspN4I GGNNCC 4 cut(s) 94, 534, 823, 903
PspPI GGNCC 5 cut(s) 93, 106, 533, 902, 974
PspPPI RGGWCCY 1 cut(s) 533
PstNI CAGNNNCTG 1 cut(s) 284
PsuI RGATCY 3 cut(s) 777, 821, 1105
PvuII CAGCTG 1 cut(s) 284
RsaI GTAC 3 cut(s) 63, 938, 1470
RsaNI GTAC 3 cut(s) 62, 937, 1469
RseI CAYNNNNRTG 1 cut(s) 1292
SaqAI TTAA 8 cut(s) 141, 294, 519, 564, 890, 1034, 1130, 1233
SatI GCNGC 8 cut(s) 279, 282, 285, 309, 381, 1184, 1380, 1458
Sau3AI GATC 6 cut(s) 450, 777, 821, 961, 1105, 1309
Sau96I GGNCC 5 cut(s) 93, 106, 533, 902, 974
SchI GAGTC 2 cut(s) 275, 457
ScrFI CCNGG 3 cut(s) 41, 289, 972
SfaNI GCATC 6 cut(s) 172, 281, 715, 826, 1090, 1242
SfcI CTRYAG 1 cut(s) 753
SfuI TTCGAA 1 cut(s) 1418
SinI GGWCC 4 cut(s) 93, 106, 533, 902
SmiMI CAYNNNNRTG 1 cut(s) 1292
SspI AATATT 1 cut(s) 331
SspMI CTAG 2 cut(s) 65, 254
StyD4I CCNGG 3 cut(s) 39, 287, 970
StyI CCWWGG 4 cut(s) 253, 474, 809, 1318
TaaI ACNGT 2 cut(s) 130, 1306
TaiI ACGT 2 cut(s) 102, 938
TaqI TCGA 2 cut(s) 461, 1418
TaqII GACCGA 1 cut(s) 110
TatI WGTACW 2 cut(s) 61, 1468
TauI GCSGC 2 cut(s) 311, 383
TfiI GAWTC 6 cut(s) 31, 549, 877, 1046, 1202, 1420
Tru1I TTAA 8 cut(s) 141, 294, 519, 564, 890, 1034, 1130, 1233
Tru9I TTAA 8 cut(s) 141, 294, 519, 564, 890, 1034, 1130, 1233
TscAI CASTG 6 cut(s) 358, 514, 625, 984, 1294, 1309
TseFI GTSAC 3 cut(s) 235, 790, 1274
TseI GCWGC 6 cut(s) 278, 281, 284, 1183, 1379, 1457
Tsp45I GTSAC 3 cut(s) 235, 790, 1274
TspDTI ATGAA 5 cut(s) 60, 64, 404, 419, 1212
TspGWI ACGGA 1 cut(s) 642
TspRI CASTG 6 cut(s) 358, 514, 625, 984, 1294, 1309
Van91I CCANNNNNTGG 2 cut(s) 815, 1319
VpaK11BI GGWCC 4 cut(s) 93, 106, 533, 902
XapI RAATTY 4 cut(s) 442, 630, 1066, 1331
XceI RCATGY 6 cut(s) 52, 164, 193, 589, 721, 1275
XmaJI CCTAGG 1 cut(s) 253
XspI CTAG 2 cut(s) 65, 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.