Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004818

Physical Location & Seq

Genomic Coordinates Reverse (-)

37625087 .. 37629542

Gene Structure 4456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g45330.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1485 bp

ATGATGCTTGAAAGATGGACTGCAGGCCTGCTATTGCTCCTAGTCGGCATGTTTACCAATGGATTAGGTGCATTCATAGGGGTAAACATTGGTACTGATGTCTCAGACCTTCCATCCGCAACTGAGATGGTTGCGATCCTTACTGCCCATCAAATTACACATGTTCGCCTTTATGATGCTGATGCTCACATGCTGAGAGCCCTTTCAAACAGTGGAATTGAAGTAGTGGTAGGTATTACAAATGAGGAAGTCCTAGGGATTGGAGAGTCTCCATCAGTAGCAGCAGCCTGGGTTAATAAGAATGTCGCTCCTTACTTACCTTCCACCAATATTACTGCCATTGCTGTTGGCAGTGAGGTTCTTACCCAAATTCCTCACGCTTCGTCAGTTTTGGTGTCTGCTATGAATTACATTCACAAAGCCCTAGTTGCTACAAACTTAAACTTCCAGGTCAAAGTTTCAACTCCACAATCCATGGATGTAATCCCTAAAGCTTTCCCCCCCTCCACTGCTACCTTTGATCCATCATGGAACTCTACAGTTTTCCAAATCCTTCAGTTTTTGAAAAACACAAATTCCTATTACATGTTAAATGCATATCCTTATTATGGTTACACCAAGGGTGACGGAATTTTCCCGATTGATTATGCTCTTTTCCAACCACTTCCTTCTGTCAAGCAGATTGTTGATCCAAACACTTTATTCCACTATAACAGCATGTTTGATGCTATGGTTGATGCTACCTATTATTCTATAGATGCTCTCAATTTTACTGGGATTTCTGTTGTTGTTACGGAGAGTGGTTGGCCATGGTTGGGTGGATCCAATGAACCTGATGCAAGTGTGGAAAATGCTCAGACATACACAAATAACTTGATTCGGAGAGTTCTAAATGATTCCGGTCCGCCAAGCAAGCCAACTTTTCCGATTAACGCTTACATTTATGAGCTGTTTAATGAAGACAAGAGGCCAGGGCCAGTGTCAGAGAAAAACTGGGGTGTGCTCTTTACTAATGGGTCTACTGTTTATCCATTAACTTTGGGTACTTCCACTCCAACCGGAAATTCTTCAGGGTTGTTCTGTGTGGCGAAAAGTGAGGCAGATCCCGATAAGTTGGAAGATGGCTTGAACTGGGCTTGTGGGCAAGGCCAAGCTGATTGCACTCCCATTCAACAAGGCCAAGGGTGCTATCTTCCTAATACACTTGTAAATCATGCTTCCTATGCGTATAATGATTACTATCAAAGAATGCAGAGTGTTGGTGGAACATGCGACTTTGATGGCACGGCTAAGACAACTACTATTGATCCCAGTTATGGATCTTGCAAATTTTCTGGAAGTTCTAATTCGAGCACAATTGGGGGACTTACACCAGTCTCGGCAATTGCACCTTCAACCGCTGTAGGAGGATGGAGTTCAAATCTTAAAGTCTCCCAACTACAGTATCTCATACCAGCCGCATTTCTTACATTGGTATTGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00500 ko04120 map00500 map04120

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

495

Amino Acids

53.17

Weight (kDa)

4.72

Isoelectric Point (pI)

36.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	26 - 345	3.9e-73	Glycosyl hydrolases family 17
X8	PF07983	360 - 430	1.4e-20	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13560 AT3G13560 AT3G13560 AT3G13560 AT3G13560
fragaria_vesca	FvH4_3g45330 FvH4_3g45330 FvH4_3g45330 FvH4_3g45330 FvH4_3g45330 FvH4_3g45330 FvH4_3g45330
malus_domestica	MD03G1005900.v1.1 MD11G1008900.v1.1
prunus_persica	Prupe.6G005700_v2.0.a1 Prupe.6G005700_v2.0.a1 Prupe.6G005700_v2.0.a1
pyrus_communis	pycom03g00600 pycom11g00580
rosa_chinensis	RchiOBHm_Chr5g0083121
rosa_laevigata	RLG00000037012
rosa_multiflora	Rmu_co8420859.1_g000001 Rmu_sc0002900.1_g000005 Rmu_sc0029325.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001390
rosa_rugosa	Rorug05G0482300
rosa_samantha	Rh5AG532000 Rh5BG559100 Rh5CG582000 Rh5DG567900
rosa_wichuraiana	Rw5G049640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1019
AciI	CCGC	4 cut(s)	117, 905, 1398, 1458
AclWI	GGATC	8 cut(s)	130, 515, 683, 816, 829, 1097, 1301, 1327
AcoI	YGGCCR	1 cut(s)	806
AcsI	RAATTY	5 cut(s)	369, 574, 630, 1063, 1328
AcuI	CTGAAG	2 cut(s)	539, 1053
AfaI	GTAC	2 cut(s)	94, 1045
AfiI	CCNNNNNNNGG	3 cut(s)	608, 815, 1316
AflIII	ACRYGT	2 cut(s)	160, 585
AgsI	TTSAA	9 cut(s)	11, 207, 221, 462, 565, 1129, 1172, 1395, 1419
AjnI	CCWGG	3 cut(s)	287, 447, 970
AjuI	GAANNNNNNNTTGG	2 cut(s)	1048, 1080
AluBI	AGCT	3 cut(s)	494, 949, 1154
AluI	AGCT	3 cut(s)	494, 949, 1154
Alw21I	GWGCWC	2 cut(s)	1005, 1355
Alw26I	GTCTC	4 cut(s)	106, 273, 1381, 1435
AlwI	GGATC	8 cut(s)	130, 515, 683, 816, 829, 1097, 1301, 1327
AoxI	GGCC	6 cut(s)	25, 806, 968, 974, 1147, 1177
ApeKI	GCWGC	2 cut(s)	281, 284
ApoI	RAATTY	5 cut(s)	369, 574, 630, 1063, 1328
Asp700I	GAANNNNTTC	1 cut(s)	1066
AspA2I	CCTAGG	1 cut(s)	253
AspS9I	GGNCC	2 cut(s)	902, 974
AsuHPI	GGTGA	1 cut(s)	635
AvaII	GGWCC	1 cut(s)	902
AvrII	CCTAGG	1 cut(s)	253
BaeI	ACNNNNGTAYC	4 cut(s)	84, 117, 1427, 1460
BalI	TGGCCA	1 cut(s)	808
BamHI	GGATCC	1 cut(s)	821
BanII	GRGCYC	1 cut(s)	202
BbsI	GAAGAC	1 cut(s)	966
Bbv12I	GWGCWC	2 cut(s)	1005, 1355
BbvI	GCAGC	2 cut(s)	293, 296
BccI	CCATC	9 cut(s)	9, 121, 121, 156, 280, 532, 1115, 1274, 1404
BceAI	ACGGC	1 cut(s)	1302
BciT130I	CCWGG	3 cut(s)	289, 449, 972
BcoDI	GTCTC	4 cut(s)	106, 273, 1381, 1435
BfaI	CTAG	3 cut(s)	41, 254, 425
BfmI	CTRYAG	5 cut(s)	21, 537, 753, 1401, 1439
BisI	GCNGC	3 cut(s)	282, 285, 1458
BlnI	CCTAGG	1 cut(s)	253
BlsI	GCNGC	3 cut(s)	283, 286, 1459
Bme1390I	CCNGG	3 cut(s)	289, 449, 972
Bme18I	GGWCC	1 cut(s)	902
BmgT120I	GGNCC	2 cut(s)	902, 974
BmiI	GGNNCC	1 cut(s)	823
BmrFI	CCNGG	3 cut(s)	289, 449, 972
BmrI	ACTGGG	4 cut(s)	783, 1003, 1141, 1305
BmsI	GCATC	6 cut(s)	166, 172, 715, 727, 748, 826
BmuI	ACTGGG	4 cut(s)	783, 1003, 1141, 1305
BpiI	GAAGAC	1 cut(s)	966
BsaBI	GATNNNNATC	1 cut(s)	1239
BsaJI	CCNNGG	7 cut(s)	253, 288, 474, 618, 809, 971, 1180
BsaWI	WCCGGW	2 cut(s)	899, 1058
BsaXI	ACNNNNNCTCC	2 cut(s)	1036, 1066
Bsc4I	CCNNNNNNNGG	3 cut(s)	608, 815, 1316
Bse1I	ACTGG	6 cut(s)	778, 977, 998, 1136, 1311, 1373
Bse3DI	GCAATG	1 cut(s)	339
Bse8I	GATNNNNATC	1 cut(s)	1239
BseBI	CCWGG	3 cut(s)	289, 449, 972
BseDI	CCNNGG	7 cut(s)	253, 288, 474, 618, 809, 971, 1180
BseGI	GGATG	3 cut(s)	113, 484, 1415
BseJI	GATNNNNATC	1 cut(s)	1239
BseLI	CCNNNNNNNGG	3 cut(s)	608, 815, 1316
BseMI	GCAATG	1 cut(s)	339
BseMII	CTCAG	4 cut(s)	114, 117, 185, 869
BseNI	ACTGG	6 cut(s)	778, 977, 998, 1136, 1311, 1373
BseXI	GCAGC	2 cut(s)	293, 296
BshFI	GGCC	6 cut(s)	27, 808, 970, 976, 1149, 1179
BsiHKAI	GWGCWC	2 cut(s)	1005, 1355
BsiSI	CCGG	2 cut(s)	900, 1059
BslFI	GGGAC	1 cut(s)	1377
BslI	CCNNNNNNNGG	3 cut(s)	608, 815, 1316
BsmAI	GTCTC	4 cut(s)	106, 273, 1381, 1435
BsmFI	GGGAC	1 cut(s)	1377
BsmI	GAATGC	2 cut(s)	71, 1254
BsnI	GGCC	6 cut(s)	27, 808, 970, 976, 1149, 1179
Bsp1286I	GDGCHC	3 cut(s)	202, 1005, 1355
Bsp143I	GATC	7 cut(s)	135, 520, 688, 821, 1102, 1306, 1319
Bsp19I	CCATGG	2 cut(s)	474, 809
BspACI	CCGC	4 cut(s)	117, 905, 1398, 1458
BspANI	GGCC	6 cut(s)	27, 808, 970, 976, 1149, 1179
BspCNI	CTCAG	4 cut(s)	115, 116, 186, 868
BspLI	GGNNCC	1 cut(s)	823
BspMAI	CTGCAG	1 cut(s)	25
BspPI	GGATC	8 cut(s)	130, 515, 683, 816, 829, 1097, 1301, 1327
BsrDI	GCAATG	1 cut(s)	339
BsrI	ACTGG	6 cut(s)	778, 977, 998, 1136, 1311, 1373
BssECI	CCNNGG	7 cut(s)	253, 288, 474, 618, 809, 971, 1180
BssMI	GATC	7 cut(s)	135, 520, 688, 821, 1102, 1306, 1319
BssT1I	CCWWGG	5 cut(s)	253, 474, 618, 809, 1180
Bst2UI	CCWGG	3 cut(s)	289, 449, 972
Bst4CI	ACNGT	4 cut(s)	212, 541, 1024, 1443
BstC8I	GCNNGC	3 cut(s)	25, 29, 914
BstDEI	CTNAG	5 cut(s)	103, 123, 194, 855, 1290
BstDSI	CCRYGG	2 cut(s)	474, 809
BstF5I	GGATG	3 cut(s)	113, 484, 1415
BstKTI	GATC	7 cut(s)	138, 523, 691, 824, 1105, 1309, 1322
BstMAI	GTCTC	4 cut(s)	106, 273, 1381, 1435
BstMBI	GATC	7 cut(s)	135, 520, 688, 821, 1102, 1306, 1319
BstMWI	GCNNNNNNNGC	4 cut(s)	428, 913, 1185, 1223
BstNI	CCWGG	3 cut(s)	289, 449, 972
BstNSI	RCATGY	6 cut(s)	52, 164, 193, 589, 721, 1272
BstSCI	CCNGG	3 cut(s)	287, 447, 970
BstSFI	CTRYAG	5 cut(s)	21, 537, 753, 1401, 1439
BstV1I	GCAGC	2 cut(s)	293, 296
BstV2I	GAAGAC	1 cut(s)	966
BstX2I	RGATCY	3 cut(s)	821, 1102, 1319
BstYI	RGATCY	3 cut(s)	821, 1102, 1319
BsuRI	GGCC	6 cut(s)	27, 808, 970, 976, 1149, 1179
BtgI	CCRYGG	2 cut(s)	474, 809
BtsCI	GGATG	3 cut(s)	113, 484, 1415
BtsI	GCAGTG	2 cut(s)	358, 507
BtsIMutI	CAGTG	4 cut(s)	217, 358, 507, 984
Cac8I	GCNNGC	3 cut(s)	25, 29, 914
Cfr13I	GGNCC	2 cut(s)	902, 974
CpoI	CGGWCCG	1 cut(s)	902
Csp6I	GTAC	2 cut(s)	93, 1044
CspI	CGGWCCG	1 cut(s)	902
CviQI	GTAC	2 cut(s)	93, 1044
DdeI	CTNAG	5 cut(s)	103, 123, 194, 855, 1290
DpnI	GATC	7 cut(s)	137, 522, 690, 823, 1104, 1308, 1321
DpnII	GATC	7 cut(s)	135, 520, 688, 821, 1102, 1306, 1319
EaeI	YGGCCR	1 cut(s)	806
EciI	GGCGGA	1 cut(s)	894
Eco130I	CCWWGG	5 cut(s)	253, 474, 618, 809, 1180
Eco147I	AGGCCT	1 cut(s)	27
Eco24I	GRGCYC	1 cut(s)	202
Eco47I	GGWCC	1 cut(s)	902
Eco57I	CTGAAG	2 cut(s)	539, 1053
EcoRII	CCWGG	3 cut(s)	287, 447, 970
EcoT14I	CCWWGG	5 cut(s)	253, 474, 618, 809, 1180
EcoT22I	ATGCAT	1 cut(s)	598
EcoT38I	GRGCYC	1 cut(s)	202
ErhI	CCWWGG	5 cut(s)	253, 474, 618, 809, 1180
FaqI	GGGAC	1 cut(s)	1377
FblI	GTMKAC	1 cut(s)	1019
Fnu4HI	GCNGC	3 cut(s)	282, 285, 1458
FokI	GGATG	3 cut(s)	100, 491, 1422
FriOI	GRGCYC	1 cut(s)	202
Fsp4HI	GCNGC	3 cut(s)	282, 285, 1458
FspBI	CTAG	3 cut(s)	41, 254, 425
GluI	GCNGC	3 cut(s)	282, 285, 1458
HaeIII	GGCC	6 cut(s)	27, 808, 970, 976, 1149, 1179
HapII	CCGG	2 cut(s)	900, 1059
HindIII	AAGCTT	1 cut(s)	492
HinfI	GANTC	3 cut(s)	266, 877, 896
HpaII	CCGG	2 cut(s)	900, 1059
HphI	GGTGA	1 cut(s)	635
Hpy166II	GTNNAC	3 cut(s)	54, 85, 1020
Hpy188I	TCNGA	5 cut(s)	106, 858, 882, 927, 985
Hpy188III	TCNNGA	3 cut(s)	637, 1106, 1335
Hpy8I	GTNNAC	3 cut(s)	54, 85, 1020
HpyAV	CCTTC	5 cut(s)	119, 330, 563, 678, 1401
HpyCH4III	ACNGT	4 cut(s)	212, 541, 1024, 1443
HpyCH4V	TGCA	8 cut(s)	23, 71, 596, 839, 1161, 1252, 1326, 1388
HpyF10VI	GCNNNNNNNGC	4 cut(s)	428, 913, 1185, 1223
HpyF3I	CTNAG	5 cut(s)	103, 123, 194, 855, 1290
Kzo9I	GATC	7 cut(s)	135, 520, 688, 821, 1102, 1306, 1319
LmnI	GCTCC	2 cut(s)	42, 313
Lsp1109I	GCAGC	2 cut(s)	293, 296
LweI	GCATC	6 cut(s)	166, 172, 715, 727, 748, 826
MaeI	CTAG	3 cut(s)	41, 254, 425
MaeIII	GTNAC	3 cut(s)	611, 623, 790
MalI	GATC	7 cut(s)	137, 522, 690, 823, 1104, 1308, 1321
MboI	GATC	7 cut(s)	135, 520, 688, 821, 1102, 1306, 1319
MboII	GAAGA	4 cut(s)	971, 1059, 1130, 1184
MfeI	CAATTG	2 cut(s)	1356, 1383
MflI	RGATCY	3 cut(s)	821, 1102, 1319
MhlI	GDGCHC	3 cut(s)	202, 1005, 1355
MlsI	TGGCCA	1 cut(s)	808
MluNI	TGGCCA	1 cut(s)	808
MlyI	GAGTC	1 cut(s)	275
MmeI	TCCRAC	3 cut(s)	682, 1079, 1095
MnlI	CCTC	7 cut(s)	238, 349, 384, 514, 960, 1090, 1400
Mox20I	TGGCCA	1 cut(s)	808
Mph1103I	ATGCAT	1 cut(s)	598
MroXI	GAANNNNTTC	1 cut(s)	1066
MscI	TGGCCA	1 cut(s)	808
MseI	TTAA	7 cut(s)	294, 440, 590, 930, 954, 1034, 1425
Msp20I	TGGCCA	1 cut(s)	808
MspA1I	CMGCKG	1 cut(s)	1400
MspI	CCGG	2 cut(s)	900, 1059
MspR9I	CCNGG	3 cut(s)	289, 449, 972
MunI	CAATTG	2 cut(s)	1356, 1383
Mva1269I	GAATGC	2 cut(s)	71, 1254
MvaI	CCWGG	3 cut(s)	289, 449, 972
MwoI	GCNNNNNNNGC	4 cut(s)	428, 913, 1185, 1223
NcoI	CCATGG	2 cut(s)	474, 809
NdeII	GATC	7 cut(s)	135, 520, 688, 821, 1102, 1306, 1319
NlaIV	GGNNCC	1 cut(s)	823
NmeAIII	GCCGAG	1 cut(s)	1358
NmuCI	GTSAC	1 cut(s)	623
NsiI	ATGCAT	1 cut(s)	598
NspI	RCATGY	6 cut(s)	52, 164, 193, 589, 721, 1272
PceI	AGGCCT	1 cut(s)	27
PciI	ACATGT	2 cut(s)	160, 585
PctI	GAATGC	2 cut(s)	71, 1254
PdmI	GAANNNNTTC	1 cut(s)	1066
PfeI	GAWTC	2 cut(s)	877, 896
PkrI	GCNGC	3 cut(s)	283, 286, 1459
PleI	GAGTC	1 cut(s)	274
PpsI	GAGTC	1 cut(s)	274
PscI	ACATGT	2 cut(s)	160, 585
Psp6I	CCWGG	3 cut(s)	287, 447, 970
PspGI	CCWGG	3 cut(s)	287, 447, 970
PspN4I	GGNNCC	1 cut(s)	823
PspPI	GGNCC	2 cut(s)	902, 974
PstI	CTGCAG	1 cut(s)	25
PsuI	RGATCY	3 cut(s)	821, 1102, 1319
RsaI	GTAC	2 cut(s)	94, 1045
RsaNI	GTAC	2 cut(s)	93, 1044
Rsr2I	CGGWCCG	1 cut(s)	902
RsrII	CGGWCCG	1 cut(s)	902
SaqAI	TTAA	7 cut(s)	294, 440, 590, 930, 954, 1034, 1425
SatI	GCNGC	3 cut(s)	282, 285, 1458
Sau3AI	GATC	7 cut(s)	135, 520, 688, 821, 1102, 1306, 1319
Sau96I	GGNCC	2 cut(s)	902, 974
SchI	GAGTC	1 cut(s)	275
ScrFI	CCNGG	3 cut(s)	289, 449, 972
SduI	GDGCHC	3 cut(s)	202, 1005, 1355
SfaNI	GCATC	6 cut(s)	166, 172, 715, 727, 748, 826
SfcI	CTRYAG	5 cut(s)	21, 537, 753, 1401, 1439
SinI	GGWCC	1 cut(s)	902
SseBI	AGGCCT	1 cut(s)	27
SsiI	CCGC	4 cut(s)	117, 905, 1398, 1458
SspI	AATATT	1 cut(s)	331
SspMI	CTAG	3 cut(s)	41, 254, 425
StuI	AGGCCT	1 cut(s)	27
StyD4I	CCNGG	3 cut(s)	287, 447, 970
StyI	CCWWGG	5 cut(s)	253, 474, 618, 809, 1180
TaaI	ACNGT	4 cut(s)	212, 541, 1024, 1443
TaqI	TCGA	1 cut(s)	1349
TauI	GCSGC	1 cut(s)	1460
TfiI	GAWTC	2 cut(s)	877, 896
Tru1I	TTAA	7 cut(s)	294, 440, 590, 930, 954, 1034, 1425
Tru9I	TTAA	7 cut(s)	294, 440, 590, 930, 954, 1034, 1425
TscAI	CASTG	4 cut(s)	217, 358, 514, 984
TseFI	GTSAC	1 cut(s)	623
TseI	GCWGC	2 cut(s)	281, 284
Tsp45I	GTSAC	1 cut(s)	623
TspDTI	ATGAA	4 cut(s)	64, 419, 843, 972
TspGWI	ACGGA	2 cut(s)	642, 809
TspRI	CASTG	4 cut(s)	217, 358, 514, 984
VpaK11BI	GGWCC	1 cut(s)	902
XapI	RAATTY	5 cut(s)	369, 574, 630, 1063, 1328
XceI	RCATGY	6 cut(s)	52, 164, 193, 589, 721, 1272
XmaJI	CCTAGG	1 cut(s)	253
XmiI	GTMKAC	1 cut(s)	1019
XmnI	GAANNNNTTC	1 cut(s)	1066
XspI	CTAG	3 cut(s)	41, 254, 425
Zsp2I	ATGCAT	1 cut(s)	598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.