Prupe.6G005700_v2.0.a1

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
525995 .. 530717
4723 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G005700.2

Sequence Viewer

Length: 1485 bp
ATGATGCATAAAAAATGGATTGGAGGCGTGCTTTTGCTCCTAATTGGCATGTTTACAAGTGTATTAGGTGCATTCATTGGGATAAACATTGGGACCGACGTCTCAGACCTTCCGTCTGAGACAGATACAGTTGCGCTCCTTAAAGCCCATCAAATTTCACATGTGCGCCTCTATAATGCTGATACTCACATGCTGAAAGCCCTTTCAAACAGTGGAATTGAAGTAATGGTAGGTGTCACAAATGAGGAAATCCTAGGGATTGGACAGTCTCCATCAACAGCAGCAGCCTGGATTAATAAAAATGTTGCAGCTTATTTGCCTTCAACCAATATTACAGCCATTGCTGTTGGCAGTGAGGTTCTTACATCAATTCCTCATGCTGCGCCGGTTTTGGTTTCTGCTATGAATTCCCTTCATAAAGCCCTGGTTGCTTCAAACCTAAATTATCAGGTCAAAGTTTCAACTCCACAGTCCATGGATGTAATCCCTAAGCCATTCCCCCCATCCACTGCCGGCTTTAATTTATCATGGGGACCTACCATTTACCAAATCCTTCAGTTTATAAAAAACACAAATTCCTATTACATGCTAAATGCCTATCCTTATTATGGGTACACCGAGGGGAATGGAATTTTCCCGCTTGATTATGCTCTTTTCCGCCCACTTCCCTCTGTCAAGCAGATTGTTGACCCAAACACTCTTTTCCATTACACCAGCATGTTTGATGCTATGGTGGACGCTACCTATTATTCCATAGAGGCTTTCAATTTTTCTGGGATCTCTATTGTTGTCACAGAGTCTGGTTGGCCATGGTTTGGTGGATCCAATGAACCGGATGCCAACACAGGAAATGCTCAGACATACACAAATAATTTGATTCGGCGAGTGTTAAATGATTCAGGTCCTCCCAGCCAGCCAAAATTGCCCATCAACACGTACATTTATGAGTTGTTCAATGAAGACGAGAGGCCAGGACCAGTGTCGGTGAAAAATTGGGGTGTGCTCTTTACGAATGGGTCTTCTGTATATCCTTTAAGTTTGAGTACTTCCAATCAAATTACTGGGAATTCTTCTGGGGTTTTCTGTGTGGCGAAAGCTGATGCAGATCCTGATAAGTTGCAGGATGGCTTAAACTGGGCTTGTGGGCAAGGCCAAGCTAACTGCACTCCTATTCAAGAAGGGCAGCGGTGTTATCTCCCCAATACTATTGCAAATCATGCTTCATATGCTTTTAATGACTATTATCAAAAGATGCAAAGTGTTGGCGGAACATGTGACTTTGATGACACCGCCATGACAACTTCTGTTGATCCAAGTTATGGATCTTGTAAATTTACCGGAAGTTCTAATTCAAGCACAATCGGGGGACTTACACCAGCTGCAATTGCACCTTCAAGCGCTGTTGGAGGCTGGAGTTCAAATCTACAAGTTTCCAATCTTCAATATCTCATACCGGCAGCATTTCTTGTATTGCTTTTGCTTTGA

Protein Analysis

495

Amino Acids

53.18

Weight (kDa)

5.02

Isoelectric Point (pI)

37.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 563
AatII GACGTC 1 cut(s) 102
AccB7I CCANNNNNTGG 2 cut(s) 815, 1319
AciI CCGC 5 cut(s) 638, 658, 1186, 1266, 1290
AclWI GGATC 6 cut(s) 785, 816, 829, 1100, 1304, 1330
AcoI YGGCCR 1 cut(s) 806
AcsI RAATTY 6 cut(s) 153, 406, 574, 630, 1066, 1331
AcuI CTGAAG 1 cut(s) 539
AcyI GRCGYC 1 cut(s) 99
AfaI GTAC 3 cut(s) 614, 938, 1045
AfeI AGCGCT 1 cut(s) 1399
AfiI CCNNNNNNNGG 3 cut(s) 608, 815, 1319
AflIII ACRYGT 3 cut(s) 160, 933, 1271
AhdI GACNNNNNGTC 1 cut(s) 112
AjnI CCWGG 3 cut(s) 287, 423, 970
AluBI AGCT 4 cut(s) 311, 1097, 1157, 1379
AluI AGCT 4 cut(s) 311, 1097, 1157, 1379
Alw21I GWGCWC 1 cut(s) 1005
Alw26I GTCTC 3 cut(s) 106, 113, 273
AlwI GGATC 6 cut(s) 785, 816, 829, 1100, 1304, 1330
AlwNI CAGNNNCTG 2 cut(s) 800, 1109
Aor51HI AGCGCT 1 cut(s) 1399
AoxI GGCC 3 cut(s) 806, 968, 1150
ApeKI GCWGC 7 cut(s) 281, 284, 308, 380, 1183, 1379, 1457
ApoI RAATTY 6 cut(s) 153, 406, 574, 630, 1066, 1331
AseI ATTAAT 1 cut(s) 294
AspA2I CCTAGG 1 cut(s) 253
AspLEI GCGC 4 cut(s) 136, 168, 385, 1400
AspS9I GGNCC 4 cut(s) 93, 533, 902, 974
AsuHPI GGTGA 1 cut(s) 997
AvaII GGWCC 4 cut(s) 93, 533, 902, 974
AvrII CCTAGG 1 cut(s) 253
BalI TGGCCA 1 cut(s) 808
BamHI GGATCC 1 cut(s) 821
BbsI GAAGAC 2 cut(s) 966, 1011
Bbv12I GWGCWC 1 cut(s) 1005
BbvI GCAGC 7 cut(s) 293, 296, 320, 367, 1195, 1366, 1469
BccI CCATC 5 cut(s) 156, 280, 511, 935, 1118
BciT130I CCWGG 3 cut(s) 289, 425, 972
BcoDI GTCTC 3 cut(s) 106, 113, 273
BfaI CTAG 1 cut(s) 254
BfoI RGCGCY 1 cut(s) 1401
BisI GCNGC 7 cut(s) 282, 285, 309, 381, 1184, 1380, 1458
BlnI CCTAGG 1 cut(s) 253
BlsI GCNGC 7 cut(s) 283, 286, 310, 382, 1185, 1381, 1459
BmcAI AGTACT 1 cut(s) 1045
Bme1390I CCNGG 3 cut(s) 289, 425, 972
Bme18I GGWCC 4 cut(s) 93, 533, 902, 974
BmeRI GACNNNNNGTC 1 cut(s) 112
BmgT120I GGNCC 4 cut(s) 93, 533, 902, 974
BmiI GGNNCC 3 cut(s) 94, 534, 823
BmrFI CCNGG 3 cut(s) 289, 425, 972
BmrI ACTGGG 2 cut(s) 1071, 1144
BmsI GCATC 4 cut(s) 715, 826, 1090, 1242
BmuI ACTGGG 2 cut(s) 1071, 1144
BoxI GACNNNNGTC 2 cut(s) 98, 979
BpiI GAAGAC 2 cut(s) 966, 1011
BpmI CTGGAG 1 cut(s) 1432
Bpu10I CCTNAGC 1 cut(s) 489
BsaAI YACGTR 1 cut(s) 936
BsaBI GATNNNNATC 1 cut(s) 1104
BsaHI GRCGYC 1 cut(s) 99
BsaJI CCNNGG 5 cut(s) 253, 423, 474, 618, 809
BsaWI WCCGGW 2 cut(s) 832, 1337
Bsc4I CCNNNNNNNGG 3 cut(s) 608, 815, 1319
Bse118I RCCGGY 3 cut(s) 385, 512, 1453
Bse1I ACTGG 3 cut(s) 977, 1066, 1139
Bse3DI GCAATG 1 cut(s) 339
Bse8I GATNNNNATC 1 cut(s) 1104
BseBI CCWGG 3 cut(s) 289, 425, 972
BseDI CCNNGG 5 cut(s) 253, 423, 474, 618, 809
BseGI GGATG 4 cut(s) 484, 503, 841, 1129
BseJI GATNNNNATC 1 cut(s) 1104
BseLI CCNNNNNNNGG 3 cut(s) 608, 815, 1319
BseMI GCAATG 1 cut(s) 339
BseMII CTCAG 3 cut(s) 108, 117, 869
BseNI ACTGG 3 cut(s) 977, 1066, 1139
BseXI GCAGC 7 cut(s) 293, 296, 320, 367, 1195, 1366, 1469
BseYI CCCAGC 1 cut(s) 908
BsgI GTGCAG 1 cut(s) 1147
BshFI GGCC 3 cut(s) 808, 970, 1152
BsiHKAI GWGCWC 1 cut(s) 1005
BsiSI CCGG 5 cut(s) 386, 513, 833, 1338, 1454
BslFI GGGAC 3 cut(s) 106, 546, 1380
BslI CCNNNNNNNGG 3 cut(s) 608, 815, 1319
BsmAI GTCTC 3 cut(s) 106, 113, 273
BsmBI CGTCTC 1 cut(s) 106
BsmFI GGGAC 3 cut(s) 106, 546, 1380
BsmI GAATGC 1 cut(s) 71
BsnI GGCC 3 cut(s) 808, 970, 1152
Bsp1286I GDGCHC 1 cut(s) 1005
Bsp143I GATC 5 cut(s) 777, 821, 1105, 1309, 1322
Bsp19I CCATGG 2 cut(s) 474, 809
BspACI CCGC 5 cut(s) 638, 658, 1186, 1266, 1290
BspANI GGCC 3 cut(s) 808, 970, 1152
BspCNI CTCAG 3 cut(s) 109, 116, 868
BspLI GGNNCC 3 cut(s) 94, 534, 823
BspPI GGATC 6 cut(s) 785, 816, 829, 1100, 1304, 1330
BsrDI GCAATG 1 cut(s) 339
BsrFI RCCGGY 3 cut(s) 385, 512, 1453
BsrI ACTGG 3 cut(s) 977, 1066, 1139
BssAI RCCGGY 3 cut(s) 385, 512, 1453
BssECI CCNNGG 5 cut(s) 253, 423, 474, 618, 809
BssMI GATC 5 cut(s) 777, 821, 1105, 1309, 1322
BssNI GRCGYC 1 cut(s) 99
BssT1I CCWWGG 3 cut(s) 253, 474, 809
Bst2UI CCWGG 3 cut(s) 289, 425, 972
Bst4CI ACNGT 4 cut(s) 130, 212, 267, 471
BstACI GRCGYC 1 cut(s) 99
BstAPI GCANNNNNTGC 1 cut(s) 1217
BstBAI YACGTR 1 cut(s) 936
BstC8I GCNNGC 3 cut(s) 29, 514, 914
BstDEI CTNAG 4 cut(s) 103, 117, 489, 855
BstDSI CCRYGG 2 cut(s) 474, 809
BstF5I GGATG 4 cut(s) 484, 503, 841, 1129
BstH2I RGCGCY 1 cut(s) 1401
BstHHI GCGC 4 cut(s) 136, 168, 385, 1400
BstKTI GATC 5 cut(s) 780, 824, 1108, 1312, 1325
BstMAI GTCTC 3 cut(s) 106, 113, 273
BstMBI GATC 5 cut(s) 777, 821, 1105, 1309, 1322
BstMWI GCNNNNNNNGC 5 cut(s) 428, 922, 1217, 1226, 1385
BstNI CCWGG 3 cut(s) 289, 425, 972
BstNSI RCATGY 6 cut(s) 52, 164, 193, 589, 721, 1275
BstPAI GACNNNNGTC 2 cut(s) 98, 979
BstSCI CCNGG 3 cut(s) 287, 423, 970
BstV1I GCAGC 7 cut(s) 293, 296, 320, 367, 1195, 1366, 1469
BstV2I GAAGAC 2 cut(s) 966, 1011
BstX2I RGATCY 4 cut(s) 777, 821, 1105, 1322
BstYI RGATCY 4 cut(s) 777, 821, 1105, 1322
BsuRI GGCC 3 cut(s) 808, 970, 1152
BtgI CCRYGG 2 cut(s) 474, 809
BtsCI GGATG 4 cut(s) 484, 503, 841, 1129
BtsI GCAGTG 2 cut(s) 358, 507
BtsIMutI CAGTG 4 cut(s) 217, 358, 507, 984
Cac8I GCNNGC 3 cut(s) 29, 514, 914
CaiI CAGNNNCTG 2 cut(s) 800, 1109
CfoI GCGC 4 cut(s) 136, 168, 385, 1400
Cfr10I RCCGGY 3 cut(s) 385, 512, 1453
Cfr13I GGNCC 4 cut(s) 93, 533, 902, 974
CseI GACGC 1 cut(s) 746
Csp6I GTAC 3 cut(s) 613, 937, 1044
CviQI GTAC 3 cut(s) 613, 937, 1044
DdeI CTNAG 4 cut(s) 103, 117, 489, 855
DpnI GATC 5 cut(s) 779, 823, 1107, 1311, 1324
DpnII GATC 5 cut(s) 777, 821, 1105, 1309, 1322
DriI GACNNNNNGTC 1 cut(s) 112
EaeI YGGCCR 1 cut(s) 806
Eam1105I GACNNNNNGTC 1 cut(s) 112
EciI GGCGGA 2 cut(s) 647, 1281
Eco130I CCWWGG 3 cut(s) 253, 474, 809
Eco47I GGWCC 4 cut(s) 93, 533, 902, 974
Eco47III AGCGCT 1 cut(s) 1399
Eco57I CTGAAG 1 cut(s) 539
EcoO109I RGGNCCY 2 cut(s) 533, 902
EcoRI GAATTC 2 cut(s) 406, 1066
EcoRII CCWGG 3 cut(s) 287, 423, 970
EcoT14I CCWWGG 3 cut(s) 253, 474, 809
EcoT22I ATGCAT 1 cut(s) 9
ErhI CCWWGG 3 cut(s) 253, 474, 809
Esp3I CGTCTC 1 cut(s) 106
FaqI GGGAC 3 cut(s) 106, 546, 1380
FauI CCCGC 1 cut(s) 645
FauNDI CATATG 1 cut(s) 1225
Fnu4HI GCNGC 7 cut(s) 282, 285, 309, 381, 1184, 1380, 1458
FokI GGATG 4 cut(s) 490, 491, 848, 1136
Fsp4HI GCNGC 7 cut(s) 282, 285, 309, 381, 1184, 1380, 1458
FspBI CTAG 1 cut(s) 254
GlaI GCGC 4 cut(s) 135, 167, 384, 1399
GluI GCNGC 7 cut(s) 282, 285, 309, 381, 1184, 1380, 1458
GsaI CCCAGC 1 cut(s) 912
GsuI CTGGAG 1 cut(s) 1432
HaeII RGCGCY 1 cut(s) 1401
HaeIII GGCC 3 cut(s) 808, 970, 1152
HapII CCGG 5 cut(s) 386, 513, 833, 1338, 1454
HgaI GACGC 1 cut(s) 746
HhaI GCGC 4 cut(s) 136, 168, 385, 1400
Hin1I GRCGYC 1 cut(s) 99
Hin6I GCGC 4 cut(s) 134, 166, 383, 1398
HinP1I GCGC 4 cut(s) 134, 166, 383, 1398
HincII GTYRAC 1 cut(s) 688
HindII GTYRAC 1 cut(s) 688
HinfI GANTC 3 cut(s) 797, 877, 896
HpaII CCGG 5 cut(s) 386, 513, 833, 1338, 1454
HphI GGTGA 1 cut(s) 997
Hpy166II GTNNAC 4 cut(s) 54, 615, 688, 736
Hpy188I TCNGA 3 cut(s) 106, 118, 858
Hpy188III TCNNGA 2 cut(s) 1109, 1175
Hpy8I GTNNAC 4 cut(s) 54, 615, 688, 736
Hpy99I CGWCG 1 cut(s) 101
HpyAV CCTTC 6 cut(s) 119, 330, 422, 563, 1172, 1401
HpyCH4III ACNGT 4 cut(s) 130, 212, 267, 471
HpyCH4IV ACGT 2 cut(s) 99, 935
HpyF10VI GCNNNNNNNGC 5 cut(s) 428, 922, 1217, 1226, 1385
HpyF3I CTNAG 4 cut(s) 103, 117, 489, 855
HpySE526I ACGT 2 cut(s) 99, 935
Hsp92I GRCGYC 1 cut(s) 99
HspAI GCGC 4 cut(s) 134, 166, 383, 1398
KroI GCCGGC 1 cut(s) 512
KroNI GCCGGC 1 cut(s) 514
Kzo9I GATC 5 cut(s) 777, 821, 1105, 1309, 1322
LmnI GCTCC 2 cut(s) 42, 141
Lsp1109I GCAGC 7 cut(s) 293, 296, 320, 367, 1195, 1366, 1469
LweI GCATC 4 cut(s) 715, 826, 1090, 1242
MaeI CTAG 1 cut(s) 254
MaeII ACGT 2 cut(s) 99, 935
MaeIII GTNAC 3 cut(s) 235, 790, 1274
MalI GATC 5 cut(s) 779, 823, 1107, 1311, 1324
MboI GATC 5 cut(s) 777, 821, 1105, 1309, 1322
MboII GAAGA 4 cut(s) 971, 1011, 1062, 1430
MfeI CAATTG 1 cut(s) 1383
MflI RGATCY 4 cut(s) 777, 821, 1105, 1322
MhlI GDGCHC 1 cut(s) 1005
MlsI TGGCCA 1 cut(s) 808
MluNI TGGCCA 1 cut(s) 808
MlyI GAGTC 1 cut(s) 806
MmeI TCCRAC 1 cut(s) 1384
Mox20I TGGCCA 1 cut(s) 808
Mph1103I ATGCAT 1 cut(s) 9
MroNI GCCGGC 1 cut(s) 512
MscI TGGCCA 1 cut(s) 808
MseI TTAA 7 cut(s) 141, 294, 519, 890, 1034, 1130, 1233
MslI CAYNNNNRTG 2 cut(s) 716, 1292
Msp20I TGGCCA 1 cut(s) 808
MspA1I CMGCKG 2 cut(s) 1186, 1379
MspI CCGG 5 cut(s) 386, 513, 833, 1338, 1454
MspR9I CCNGG 3 cut(s) 289, 425, 972
MunI CAATTG 1 cut(s) 1383
Mva1269I GAATGC 1 cut(s) 71
MvaI CCWGG 3 cut(s) 289, 425, 972
MwoI GCNNNNNNNGC 5 cut(s) 428, 922, 1217, 1226, 1385
NaeI GCCGGC 1 cut(s) 514
NcoI CCATGG 2 cut(s) 474, 809
NdeI CATATG 1 cut(s) 1225
NdeII GATC 5 cut(s) 777, 821, 1105, 1309, 1322
NgoMIV GCCGGC 1 cut(s) 512
NlaIV GGNNCC 3 cut(s) 94, 534, 823
NmuCI GTSAC 3 cut(s) 235, 790, 1274
NsiI ATGCAT 1 cut(s) 9
NspI RCATGY 6 cut(s) 52, 164, 193, 589, 721, 1275
PciI ACATGT 2 cut(s) 160, 1271
PctI GAATGC 1 cut(s) 71
PdiI GCCGGC 1 cut(s) 514
PfeI GAWTC 2 cut(s) 877, 896
PflMI CCANNNNNTGG 2 cut(s) 815, 1319
PkrI GCNGC 7 cut(s) 283, 286, 310, 382, 1185, 1381, 1459
PleI GAGTC 1 cut(s) 805
PpsI GAGTC 1 cut(s) 805
Ppu21I YACGTR 1 cut(s) 936
PpuMI RGGWCCY 2 cut(s) 533, 902
PscI ACATGT 2 cut(s) 160, 1271
PshAI GACNNNNGTC 2 cut(s) 98, 979
PshBI ATTAAT 1 cut(s) 294
PsiI TTATAA 1 cut(s) 563
Psp5II RGGWCCY 2 cut(s) 533, 902
Psp6I CCWGG 3 cut(s) 287, 423, 970
PspFI CCCAGC 1 cut(s) 908
PspGI CCWGG 3 cut(s) 287, 423, 970
PspN4I GGNNCC 3 cut(s) 94, 534, 823
PspPI GGNCC 4 cut(s) 93, 533, 902, 974
PspPPI RGGWCCY 2 cut(s) 533, 902
PstNI CAGNNNCTG 2 cut(s) 800, 1109
PsuI RGATCY 4 cut(s) 777, 821, 1105, 1322
PvuII CAGCTG 1 cut(s) 1379
RsaI GTAC 3 cut(s) 614, 938, 1045
RsaNI GTAC 3 cut(s) 613, 937, 1044
RseI CAYNNNNRTG 2 cut(s) 716, 1292
SaqAI TTAA 7 cut(s) 141, 294, 519, 890, 1034, 1130, 1233
SatI GCNGC 7 cut(s) 282, 285, 309, 381, 1184, 1380, 1458
Sau3AI GATC 5 cut(s) 777, 821, 1105, 1309, 1322
Sau96I GGNCC 4 cut(s) 93, 533, 902, 974
ScaI AGTACT 1 cut(s) 1045
SchI GAGTC 1 cut(s) 806
ScrFI CCNGG 3 cut(s) 289, 425, 972
SduI GDGCHC 1 cut(s) 1005
SfaNI GCATC 4 cut(s) 715, 826, 1090, 1242
SinI GGWCC 4 cut(s) 93, 533, 902, 974
SmiMI CAYNNNNRTG 2 cut(s) 716, 1292
SsiI CCGC 5 cut(s) 638, 658, 1186, 1266, 1290
SspI AATATT 1 cut(s) 331
SspMI CTAG 1 cut(s) 254
StyD4I CCNGG 3 cut(s) 287, 423, 970
StyI CCWWGG 3 cut(s) 253, 474, 809
TaaI ACNGT 4 cut(s) 130, 212, 267, 471
TaiI ACGT 2 cut(s) 102, 938
TaqII GACCGA 1 cut(s) 110
TatI WGTACW 1 cut(s) 1043
TfiI GAWTC 2 cut(s) 877, 896
Tru1I TTAA 7 cut(s) 141, 294, 519, 890, 1034, 1130, 1233
Tru9I TTAA 7 cut(s) 141, 294, 519, 890, 1034, 1130, 1233
TscAI CASTG 4 cut(s) 217, 358, 514, 984
TseFI GTSAC 3 cut(s) 235, 790, 1274
TseI GCWGC 7 cut(s) 281, 284, 308, 380, 1183, 1379, 1457
Tsp45I GTSAC 3 cut(s) 235, 790, 1274
TspDTI ATGAA 6 cut(s) 64, 404, 419, 843, 972, 1212
TspGWI ACGGA 1 cut(s) 102
TspRI CASTG 4 cut(s) 217, 358, 514, 984
Van91I CCANNNNNTGG 2 cut(s) 815, 1319
VpaK11BI GGWCC 4 cut(s) 93, 533, 902, 974
VspI ATTAAT 1 cut(s) 294
XapI RAATTY 6 cut(s) 153, 406, 574, 630, 1066, 1331
XceI RCATGY 6 cut(s) 52, 164, 193, 589, 721, 1275
XmaJI CCTAGG 1 cut(s) 253
XspI CTAG 1 cut(s) 254
ZraI GACGTC 1 cut(s) 100
ZrmI AGTACT 1 cut(s) 1045
Zsp2I ATGCAT 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.