pycom03g00600

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Forward (+)
495413 .. 498110
2698 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g00600.2

Sequence Viewer

Length: 1485 bp
ATGATGCGTGGAAAATGGATTGGAGGCATGATTTTCCTCCTAGTTGGCATGTTCACCAATGTACTAGGTTCATTCATAGGGATAAACATTGGGACCGATGTTTCGGACCTTCCATCTGAGACAGATACGGTTGCACTCCTTAAAGCCCATCAAATTACACATGTGCGCCTCTACAATGCTGATGCTCACATGCTGAAAGCCCTTTCAAACAGCGGAATTGAAGTAATGGTAGGTGTTACAAATGAGGAAGTCCTAGGGATTGGAGAGTCTGCATCAGTAGCAGCTGCCTGGATTAACAAAAATGTGGCAGCTTATTTGCCTTCAACCAATATTACCGCCATTGCTGTTGGCAGTGAGGTCATTACCACAATCCCTAATGCTGCGCCAGTTTTGGTTTCTGCTATGAATTACCTTCATAAAGCCTTAGTTGCGTCAAACCTAAATTTTCAGATCAAAGTTTCGACTCCACAATCCATGGATATAATCCCAAAGCCTTTCCCCCCGTCCACTGCCACATTTAATTACTCATGGGGACCTACCATTTACCGTATCCTTCAGTTTATTAAAAACACTAATTCCTATTACATGCTAAATGCCTATCCTTATTATGGTTACACCAGTGGGGACGGAATTTTTCCGCTTGATTATGCTCTTTTCCGACCCCTTCCCCCTGTCAAGCAGATTGTTGACCCGAACACTCTTTTCCACTATAATAGCATGTTTGATGCTATGGTGGACGCCACCTATTATTCTATAGAGGATTTCAATTTCTCTGGGATCTCTGTTGTTGTCACCGAGACTGGCTGGCCATGGTTTGGCGGATCCAAAGAGCCTGATGCCAACACGGGAAATGCTCAGACCTACACTAATAATTTGATTCGACGAGTGTTAAATGGTTCGGGTCCACCCAGCCAGCCAAAGTTGCCCATCAACACGTACATTTACGAGTTGTTCAACGAAGATCAGAGGTCAGGGCCAGTGTCAGAGAAAAACTGGGGTGTGTTCTATACGAATGGGTCTGCTGTATATCCTTTAAGTTTGAATGATTCCAATCAAATTACTGGGAATTCTTCAGGGGTTTTCTGTGTGGCAAAAGCTGATGCAGATCCAGATAAGTTGCAGGATGGCTTAAACTGGGCTTGTGGGCAAGGCGGGGCTAACTGCACTCCCATTCAAAAAGGACAGCGGTGTTATCTCCCCGATACTACTGTAAATCATGCTTCATATGCTTTTAATGACTATTACCAAAAGATGCAAAGTGCTGGCGGAACATGTGACTTTGATGGCACTGCCATGACAACTACTGTTGATCCAAGCTATGGCGCGTGTAAATTTTCCGGAAGTTCTAATTCAAGTGCATTTACGGGACTTACACCAGCGTCAATTGCACCTTCAAGCCCTGTTGGAGGCTGGAGTTCGAATCTACAAGTTTCCAATCTTCAATATCTCATGCCGGCTGCATTTCTTGTACTGTTTTTGCTTTGA

Protein Analysis

495

Amino Acids

53.42

Weight (kDa)

5.04

Isoelectric Point (pI)

34.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 815, 1319
AccII CGCG 1 cut(s) 1325
AccIII TCCGGA 1 cut(s) 1337
AciI CCGC 7 cut(s) 213, 336, 638, 819, 1152, 1186, 1266
AclWI GGATC 5 cut(s) 785, 816, 829, 1100, 1304
AcoI YGGCCR 1 cut(s) 806
AcsI RAATTY 4 cut(s) 442, 630, 1066, 1331
AcuI CTGAAG 2 cut(s) 539, 1056
AcyI GRCGYC 1 cut(s) 738
AfaI GTAC 3 cut(s) 63, 938, 1470
AfiI CCNNNNNNNGG 4 cut(s) 608, 815, 1319, 1406
AflIII ACRYGT 3 cut(s) 160, 933, 1271
AjnI CCWGG 1 cut(s) 287
AluBI AGCT 4 cut(s) 284, 311, 1097, 1317
AluI AGCT 4 cut(s) 284, 311, 1097, 1317
Alw26I GTCTC 2 cut(s) 113, 791
AlwI GGATC 5 cut(s) 785, 816, 829, 1100, 1304
Aor13HI TCCGGA 1 cut(s) 1337
AoxI GGCC 2 cut(s) 806, 974
ApeKI GCWGC 5 cut(s) 281, 284, 308, 380, 1457
ApoI RAATTY 4 cut(s) 442, 630, 1066, 1331
ArsI GACNNNNNNTTYG 2 cut(s) 85, 117
AspA2I CCTAGG 1 cut(s) 253
AspLEI GCGC 3 cut(s) 168, 385, 1325
AspS9I GGNCC 5 cut(s) 93, 106, 533, 902, 974
AsuHPI GGTGA 2 cut(s) 46, 784
AsuII TTCGAA 1 cut(s) 1418
AvaII GGWCC 4 cut(s) 93, 106, 533, 902
AvrII CCTAGG 1 cut(s) 253
BaeI ACNNNNGTAYC 2 cut(s) 1194, 1227
BalI TGGCCA 1 cut(s) 808
BamHI GGATCC 1 cut(s) 821
BbvI GCAGC 5 cut(s) 271, 293, 320, 367, 1444
BccI CCATC 5 cut(s) 121, 156, 935, 1118, 1277
BciT130I CCWGG 1 cut(s) 289
BciVI GTATCC 1 cut(s) 560
BcoDI GTCTC 2 cut(s) 113, 791
BfaI CTAG 3 cut(s) 41, 65, 254
BfmI CTRYAG 1 cut(s) 753
BfuI GTATCC 1 cut(s) 560
BisI GCNGC 5 cut(s) 282, 285, 309, 381, 1458
BlnI CCTAGG 1 cut(s) 253
BlsI GCNGC 5 cut(s) 283, 286, 310, 382, 1459
Bme1390I CCNGG 1 cut(s) 289
Bme18I GGWCC 4 cut(s) 93, 106, 533, 902
BmgT120I GGNCC 5 cut(s) 93, 106, 533, 902, 974
BmiI GGNNCC 4 cut(s) 94, 534, 823, 903
BmrFI CCNGG 1 cut(s) 289
BmrI ACTGGG 3 cut(s) 1003, 1071, 1144
BmsI GCATC 6 cut(s) 172, 281, 715, 826, 1090, 1242
BmuI ACTGGG 3 cut(s) 1003, 1071, 1144
BpmI CTGGAG 1 cut(s) 1432
Bpu14I TTCGAA 1 cut(s) 1418
BsaAI YACGTR 1 cut(s) 936
BsaBI GATNNNNATC 2 cut(s) 1050, 1104
BsaHI GRCGYC 1 cut(s) 738
BsaJI CCNNGG 3 cut(s) 253, 474, 809
BsaWI WCCGGW 1 cut(s) 1337
Bsc4I CCNNNNNNNGG 4 cut(s) 608, 815, 1319, 1406
Bse118I RCCGGY 1 cut(s) 1453
Bse1I ACTGG 7 cut(s) 386, 618, 805, 977, 998, 1066, 1139
Bse3DI GCAATG 1 cut(s) 339
Bse8I GATNNNNATC 2 cut(s) 1050, 1104
BseAI TCCGGA 1 cut(s) 1337
BseBI CCWGG 1 cut(s) 289
BseDI CCNNGG 3 cut(s) 253, 474, 809
BseGI GGATG 1 cut(s) 1129
BseJI GATNNNNATC 2 cut(s) 1050, 1104
BseLI CCNNNNNNNGG 4 cut(s) 608, 815, 1319, 1406
BseMI GCAATG 1 cut(s) 339
BseMII CTCAG 2 cut(s) 108, 869
BseNI ACTGG 7 cut(s) 386, 618, 805, 977, 998, 1066, 1139
BseXI GCAGC 5 cut(s) 271, 293, 320, 367, 1444
BseYI CCCAGC 1 cut(s) 908
BsgI GTGCAG 1 cut(s) 1147
Bsh1236I CGCG 1 cut(s) 1325
BshFI GGCC 2 cut(s) 808, 976
BsiSI CCGG 2 cut(s) 1338, 1454
BslFI GGGAC 4 cut(s) 106, 546, 638, 1380
BslI CCNNNNNNNGG 4 cut(s) 608, 815, 1319, 1406
BsmAI GTCTC 2 cut(s) 113, 791
BsmFI GGGAC 4 cut(s) 106, 546, 638, 1380
BsnI GGCC 2 cut(s) 808, 976
Bsp119I TTCGAA 1 cut(s) 1418
Bsp13I TCCGGA 1 cut(s) 1337
Bsp143I GATC 6 cut(s) 450, 777, 821, 961, 1105, 1309
Bsp19I CCATGG 2 cut(s) 474, 809
BspACI CCGC 7 cut(s) 213, 336, 638, 819, 1152, 1186, 1266
BspANI GGCC 2 cut(s) 808, 976
BspCNI CTCAG 2 cut(s) 109, 868
BspEI TCCGGA 1 cut(s) 1337
BspFNI CGCG 1 cut(s) 1325
BspLI GGNNCC 4 cut(s) 94, 534, 823, 903
BspPI GGATC 5 cut(s) 785, 816, 829, 1100, 1304
BspT104I TTCGAA 1 cut(s) 1418
BsrDI GCAATG 1 cut(s) 339
BsrFI RCCGGY 1 cut(s) 1453
BsrI ACTGG 7 cut(s) 386, 618, 805, 977, 998, 1066, 1139
BssAI RCCGGY 1 cut(s) 1453
BssECI CCNNGG 3 cut(s) 253, 474, 809
BssMI GATC 6 cut(s) 450, 777, 821, 961, 1105, 1309
BssNI GRCGYC 1 cut(s) 738
BssT1I CCWWGG 3 cut(s) 253, 474, 809
Bst2UI CCWGG 1 cut(s) 289
Bst4CI ACNGT 5 cut(s) 130, 548, 1210, 1306, 1473
BstACI GRCGYC 1 cut(s) 738
BstBAI YACGTR 1 cut(s) 936
BstBI TTCGAA 1 cut(s) 1418
BstC8I GCNNGC 4 cut(s) 806, 914, 1264, 1455
BstDEI CTNAG 3 cut(s) 117, 424, 855
BstDSI CCRYGG 2 cut(s) 474, 809
BstENI CCTNNNNNAGG 1 cut(s) 1404
BstF5I GGATG 1 cut(s) 1129
BstFNI CGCG 1 cut(s) 1325
BstHHI GCGC 3 cut(s) 168, 385, 1325
BstKTI GATC 6 cut(s) 453, 780, 824, 964, 1108, 1312
BstMAI GTCTC 2 cut(s) 113, 791
BstMBI GATC 6 cut(s) 450, 777, 821, 961, 1105, 1309
BstMWI GCNNNNNNNGC 5 cut(s) 278, 428, 922, 1226, 1385
BstNI CCWGG 1 cut(s) 289
BstNSI RCATGY 6 cut(s) 52, 164, 193, 589, 721, 1275
BstSCI CCNGG 1 cut(s) 287
BstSFI CTRYAG 1 cut(s) 753
BstUI CGCG 1 cut(s) 1325
BstV1I GCAGC 5 cut(s) 271, 293, 320, 367, 1444
BstX2I RGATCY 3 cut(s) 777, 821, 1105
BstYI RGATCY 3 cut(s) 777, 821, 1105
BsuI GTATCC 1 cut(s) 560
BsuRI GGCC 2 cut(s) 808, 976
BtgI CCRYGG 2 cut(s) 474, 809
BtsCI GGATG 1 cut(s) 1129
BtsI GCAGTG 3 cut(s) 358, 507, 1287
BtsIMutI CAGTG 5 cut(s) 358, 507, 625, 984, 1287
Cac8I GCNNGC 4 cut(s) 806, 914, 1264, 1455
CfoI GCGC 3 cut(s) 168, 385, 1325
Cfr10I RCCGGY 1 cut(s) 1453
Cfr13I GGNCC 5 cut(s) 93, 106, 533, 902, 974
CseI GACGC 3 cut(s) 420, 746, 1368
Csp6I GTAC 3 cut(s) 62, 937, 1469
CviQI GTAC 3 cut(s) 62, 937, 1469
DdeI CTNAG 3 cut(s) 117, 424, 855
DpnI GATC 6 cut(s) 452, 779, 823, 963, 1107, 1311
DpnII GATC 6 cut(s) 450, 777, 821, 961, 1105, 1309
EaeI YGGCCR 1 cut(s) 806
EciI GGCGGA 2 cut(s) 834, 1281
Eco130I CCWWGG 3 cut(s) 253, 474, 809
Eco47I GGWCC 4 cut(s) 93, 106, 533, 902
Eco57I CTGAAG 2 cut(s) 539, 1056
EcoNI CCTNNNNNAGG 1 cut(s) 1404
EcoO109I RGGNCCY 1 cut(s) 533
EcoRI GAATTC 1 cut(s) 1066
EcoRII CCWGG 1 cut(s) 287
EcoT14I CCWWGG 3 cut(s) 253, 474, 809
ErhI CCWWGG 3 cut(s) 253, 474, 809
FaqI GGGAC 4 cut(s) 106, 546, 638, 1380
FauI CCCGC 1 cut(s) 1145
FauNDI CATATG 1 cut(s) 1225
Fnu4HI GCNGC 5 cut(s) 282, 285, 309, 381, 1458
FokI GGATG 1 cut(s) 1136
Fsp4HI GCNGC 5 cut(s) 282, 285, 309, 381, 1458
FspBI CTAG 3 cut(s) 41, 65, 254
GlaI GCGC 3 cut(s) 167, 384, 1324
GluI GCNGC 5 cut(s) 282, 285, 309, 381, 1458
GsaI CCCAGC 1 cut(s) 912
GsuI CTGGAG 1 cut(s) 1432
HaeIII GGCC 2 cut(s) 808, 976
HapII CCGG 2 cut(s) 1338, 1454
HgaI GACGC 3 cut(s) 420, 746, 1368
HhaI GCGC 3 cut(s) 168, 385, 1325
Hin1I GRCGYC 1 cut(s) 738
Hin6I GCGC 3 cut(s) 166, 383, 1323
HinP1I GCGC 3 cut(s) 166, 383, 1323
HincII GTYRAC 1 cut(s) 688
HindII GTYRAC 1 cut(s) 688
HinfI GANTC 5 cut(s) 266, 463, 877, 1046, 1420
HpaII CCGG 2 cut(s) 1338, 1454
HphI GGTGA 2 cut(s) 46, 784
Hpy166II GTNNAC 5 cut(s) 54, 507, 688, 736, 905
Hpy188I TCNGA 7 cut(s) 106, 118, 450, 659, 858, 966, 985
Hpy188III TCNNGA 2 cut(s) 1109, 1338
Hpy8I GTNNAC 5 cut(s) 54, 507, 688, 736, 905
Hpy99I CGWCG 1 cut(s) 885
HpyAV CCTTC 6 cut(s) 119, 330, 422, 563, 674, 1401
HpyCH4III ACNGT 5 cut(s) 130, 548, 1210, 1306, 1473
HpyCH4IV ACGT 1 cut(s) 935
HpyCH4V TGCA 9 cut(s) 134, 272, 1103, 1120, 1164, 1255, 1358, 1388, 1460
HpyF10VI GCNNNNNNNGC 5 cut(s) 278, 428, 922, 1226, 1385
HpyF3I CTNAG 3 cut(s) 117, 424, 855
HpySE526I ACGT 1 cut(s) 935
Hsp92I GRCGYC 1 cut(s) 738
HspAI GCGC 3 cut(s) 166, 383, 1323
Kpn2I TCCGGA 1 cut(s) 1337
KroI GCCGGC 1 cut(s) 1453
KroNI GCCGGC 1 cut(s) 1455
Kzo9I GATC 6 cut(s) 450, 777, 821, 961, 1105, 1309
Lsp1109I GCAGC 5 cut(s) 271, 293, 320, 367, 1444
LweI GCATC 6 cut(s) 172, 281, 715, 826, 1090, 1242
MaeI CTAG 3 cut(s) 41, 65, 254
MaeII ACGT 1 cut(s) 935
MaeIII GTNAC 4 cut(s) 235, 611, 790, 1274
MalI GATC 6 cut(s) 452, 779, 823, 963, 1107, 1311
MboI GATC 6 cut(s) 450, 777, 821, 961, 1105, 1309
MboII GAAGA 3 cut(s) 971, 1062, 1430
MfeI CAATTG 1 cut(s) 1383
MflI RGATCY 3 cut(s) 777, 821, 1105
MlsI TGGCCA 1 cut(s) 808
MluNI TGGCCA 1 cut(s) 808
MlyI GAGTC 2 cut(s) 275, 457
MmeI TCCRAC 2 cut(s) 682, 1384
MnlI CCTC 8 cut(s) 17, 47, 179, 238, 349, 751, 960, 1400
Mox20I TGGCCA 1 cut(s) 808
MroI TCCGGA 1 cut(s) 1337
MroNI GCCGGC 1 cut(s) 1453
MscI TGGCCA 1 cut(s) 808
MseI TTAA 8 cut(s) 141, 294, 519, 564, 890, 1034, 1130, 1233
MslI CAYNNNNRTG 1 cut(s) 1292
Msp20I TGGCCA 1 cut(s) 808
MspA1I CMGCKG 3 cut(s) 213, 284, 1186
MspI CCGG 2 cut(s) 1338, 1454
MspR9I CCNGG 1 cut(s) 289
MunI CAATTG 1 cut(s) 1383
MvaI CCWGG 1 cut(s) 289
MvnI CGCG 1 cut(s) 1325
MwoI GCNNNNNNNGC 5 cut(s) 278, 428, 922, 1226, 1385
NaeI GCCGGC 1 cut(s) 1455
NcoI CCATGG 2 cut(s) 474, 809
NdeI CATATG 1 cut(s) 1225
NdeII GATC 6 cut(s) 450, 777, 821, 961, 1105, 1309
NgoMIV GCCGGC 1 cut(s) 1453
NlaIV GGNNCC 4 cut(s) 94, 534, 823, 903
NmuCI GTSAC 2 cut(s) 790, 1274
NspI RCATGY 6 cut(s) 52, 164, 193, 589, 721, 1275
NspV TTCGAA 1 cut(s) 1418
PciI ACATGT 2 cut(s) 160, 1271
PdiI GCCGGC 1 cut(s) 1455
PfeI GAWTC 3 cut(s) 877, 1046, 1420
PflMI CCANNNNNTGG 2 cut(s) 815, 1319
PkrI GCNGC 5 cut(s) 283, 286, 310, 382, 1459
PleI GAGTC 2 cut(s) 274, 457
PpsI GAGTC 2 cut(s) 274, 457
Ppu21I YACGTR 1 cut(s) 936
PpuMI RGGWCCY 1 cut(s) 533
PscI ACATGT 2 cut(s) 160, 1271
Psp5II RGGWCCY 1 cut(s) 533
Psp6I CCWGG 1 cut(s) 287
PspFI CCCAGC 1 cut(s) 908
PspGI CCWGG 1 cut(s) 287
PspN4I GGNNCC 4 cut(s) 94, 534, 823, 903
PspPI GGNCC 5 cut(s) 93, 106, 533, 902, 974
PspPPI RGGWCCY 1 cut(s) 533
PsuI RGATCY 3 cut(s) 777, 821, 1105
PvuII CAGCTG 1 cut(s) 284
RsaI GTAC 3 cut(s) 63, 938, 1470
RsaNI GTAC 3 cut(s) 62, 937, 1469
RseI CAYNNNNRTG 1 cut(s) 1292
SaqAI TTAA 8 cut(s) 141, 294, 519, 564, 890, 1034, 1130, 1233
SatI GCNGC 5 cut(s) 282, 285, 309, 381, 1458
Sau3AI GATC 6 cut(s) 450, 777, 821, 961, 1105, 1309
Sau96I GGNCC 5 cut(s) 93, 106, 533, 902, 974
SchI GAGTC 2 cut(s) 275, 457
ScrFI CCNGG 1 cut(s) 289
SfaNI GCATC 6 cut(s) 172, 281, 715, 826, 1090, 1242
SfcI CTRYAG 1 cut(s) 753
SfuI TTCGAA 1 cut(s) 1418
SinI GGWCC 4 cut(s) 93, 106, 533, 902
SmiMI CAYNNNNRTG 1 cut(s) 1292
SsiI CCGC 7 cut(s) 213, 336, 638, 819, 1152, 1186, 1266
SspI AATATT 1 cut(s) 331
SspMI CTAG 3 cut(s) 41, 65, 254
StyD4I CCNGG 1 cut(s) 287
StyI CCWWGG 3 cut(s) 253, 474, 809
TaaI ACNGT 5 cut(s) 130, 548, 1210, 1306, 1473
TaiI ACGT 1 cut(s) 938
TaqI TCGA 3 cut(s) 461, 880, 1418
TaqII GACCGA 1 cut(s) 110
TatI WGTACW 2 cut(s) 61, 1468
TfiI GAWTC 3 cut(s) 877, 1046, 1420
Tru1I TTAA 8 cut(s) 141, 294, 519, 564, 890, 1034, 1130, 1233
Tru9I TTAA 8 cut(s) 141, 294, 519, 564, 890, 1034, 1130, 1233
TscAI CASTG 5 cut(s) 358, 514, 625, 984, 1294
TseFI GTSAC 2 cut(s) 790, 1274
TseI GCWGC 5 cut(s) 281, 284, 308, 380, 1457
Tsp45I GTSAC 2 cut(s) 790, 1274
TspDTI ATGAA 5 cut(s) 60, 64, 404, 419, 1212
TspGWI ACGGA 1 cut(s) 642
TspRI CASTG 5 cut(s) 358, 514, 625, 984, 1294
Van91I CCANNNNNTGG 2 cut(s) 815, 1319
VpaK11BI GGWCC 4 cut(s) 93, 106, 533, 902
XagI CCTNNNNNAGG 1 cut(s) 1404
XapI RAATTY 4 cut(s) 442, 630, 1066, 1331
XceI RCATGY 6 cut(s) 52, 164, 193, 589, 721, 1275
XmaJI CCTAGG 1 cut(s) 253
XspI CTAG 3 cut(s) 41, 65, 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.