RchiOBHm_Chr5g0083121

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
88817513 .. 88821752
4240 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35727

Sequence Viewer

Length: 1482 bp
ATGATGCTTGAAAGACGGATTGCAGGCCTGCTATTGCTCCTAGTCGGCATGTTTACCAATGGATTAGGTGCATTCGTAGGGGTAAACATTGGTACTGATGTTTCAGACATTCCAGCTGGGACTGAAATAGTTGCGATCCTTATAGCCCATCAAATCACACATGTTCGCCTTTATGATGCTGATGCTCACATGCTGAGAGCCCTTTCAAACAGTGGTATTGAAGTAGTGGTAGGTATTACAAATGAGGAGGTCCTAGGGATTGGAGAGTCTCCATCAGTAGCAGCAGCCTGGGTTAATAAAAATGTCGCACCTTACTTACCTTCCACCAACATTACAGCCATTGCTGTTGGCAGTGAGGTTCTTACCCAAATTCCTCATGCTTCGCCAGTTTTGGTTTCTGCTATGAATTACATTCACAAAGCCCTGGTTGCTACAAATTTAAACTTCCAGGTCAAAGTTTCAACTCCACAATCCATGGATGTAATCCCTAAGGCTTTCCCCCCCTCCACTGCTACCTTTGATCCATCATGGAACTCTACAGTTTTCCAAATCCTTCAGTTTTTGAAAAACACAAATTCCTATTACATGTTAAATGCATATCCTTATTATGGTTACACCAAGGGTGATGGAATTTTCCCAATTGATTATGCTCTTTTTCAACCACTTCCTTCTGTCAAGCAGATTGTTGATCCAAACACTTTATCCCACTATAACAGCATGTTTGATGCTATGGTTGATGCTACCTATTATTCTATAGAGGCCCTCAATTTTACTGGGATTTCTGTTGTTGTTACGGAGAGTGGTTGGCCATCTTTGGGTGGATCCAATGAACCTGATGCGAATGTGGAAAATGCTCAGACATACACAAACAACTTGATTCGGCGAGTTTTGAATGATTCAGGTCCACCAAGCAAGCCAACTTTTCCTATCAACACTTACATTTATGAGTTGTTCAATGAAGATAAGAGGCCAGGGCCAGTGTCAGAGAAAAATTGGGGCGTGCTCTTCACTAATGGGTCTACTGTTTATCCTTTAACTTGGGGTACTTCCACTCCAACTGGAAATTCTTCAGGGTTGTTCTGTGTGGCGCAAACTGATGCAGATCCTGATAAGTTGCAAGATGGCTTAAACTGGGCTTGTGGGCAAGGCCAAGCTGATTGCACTCCCATTCAACAAGGGCATGGGTGTTTTCTTCCCAATACACTTGTAAATCATGCTTCATATGCGTATAATGATTACTATCAAAGAATGCAGAGTGTCGGTGGAACATGCGACTTTGATGGCACGGCTAAGACAACTACTGTTGATCCCAGTTATGGATCTTGCAAATTTGCAAGTTCTAATTCAAGTACAACCGGGGCACTTACACCAATCTCGGCGACTGCACCTTCAAGCCCTGTTGGAGGCTGGAGTTCAAATCTGAAAGTCTCCCAACTGCAGTATCTCATACCAGCCGCATTTCTTCCATTGTTATTGTTTTGA

Protein Analysis

493

Amino Acids

53.03

Weight (kDa)

4.82

Isoelectric Point (pI)

37.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 26 - 345 2.1e-72 Glycosyl hydrolases family 17
X8 PF07983 360 - 430 2.9e-20 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1019
AciI CCGC 1 cut(s) 1455
AclWI GGATC 8 cut(s) 130, 515, 683, 816, 829, 1097, 1301, 1327
AcoI YGGCCR 1 cut(s) 806
AcsI RAATTY 6 cut(s) 369, 436, 574, 630, 1063, 1328
AcuI CTGAAG 2 cut(s) 539, 1053
AfaI GTAC 3 cut(s) 94, 1045, 1351
AfiI CCNNNNNNNGG 4 cut(s) 608, 815, 1316, 1403
AflIII ACRYGT 2 cut(s) 160, 585
AjnI CCWGG 4 cut(s) 287, 423, 447, 970
AjuI GAANNNNNNNTTGG 2 cut(s) 1048, 1080
AluBI AGCT 2 cut(s) 116, 1154
AluI AGCT 2 cut(s) 116, 1154
Alw21I GWGCWC 1 cut(s) 1005
Alw26I GTCTC 2 cut(s) 273, 1432
AlwI GGATC 8 cut(s) 130, 515, 683, 816, 829, 1097, 1301, 1327
AlwNI CAGNNNCTG 1 cut(s) 1106
AoxI GGCC 6 cut(s) 25, 759, 806, 968, 974, 1147
ApeKI GCWGC 2 cut(s) 281, 284
ApoI RAATTY 6 cut(s) 369, 436, 574, 630, 1063, 1328
Asp700I GAANNNNTTC 1 cut(s) 1066
AspA2I CCTAGG 1 cut(s) 253
AspLEI GCGC 1 cut(s) 1090
AspS9I GGNCC 4 cut(s) 250, 760, 902, 974
AsuC2I CCSGG 1 cut(s) 1357
AsuHPI GGTGA 1 cut(s) 635
AvaII GGWCC 2 cut(s) 250, 902
AvrII CCTAGG 1 cut(s) 253
AxyI CCTNAGG 1 cut(s) 489
BaeGI GKGCMC 1 cut(s) 1363
BaeI ACNNNNGTAYC 4 cut(s) 84, 117, 1424, 1457
BalI TGGCCA 1 cut(s) 808
BamHI GGATCC 1 cut(s) 821
BanII GRGCYC 1 cut(s) 202
Bbv12I GWGCWC 1 cut(s) 1005
BbvI GCAGC 2 cut(s) 293, 296
BccI CCATC 7 cut(s) 156, 280, 532, 620, 817, 1115, 1274
BceAI ACGGC 1 cut(s) 1302
BciT130I CCWGG 4 cut(s) 289, 425, 449, 972
BcnI CCSGG 1 cut(s) 1357
BcoDI GTCTC 2 cut(s) 273, 1432
BfaI CTAG 2 cut(s) 41, 254
BfmI CTRYAG 3 cut(s) 537, 753, 1436
BisI GCNGC 3 cut(s) 282, 285, 1455
BlnI CCTAGG 1 cut(s) 253
BlsI GCNGC 3 cut(s) 283, 286, 1456
Bme1390I CCNGG 5 cut(s) 289, 425, 449, 972, 1357
Bme18I GGWCC 2 cut(s) 250, 902
BmgT120I GGNCC 4 cut(s) 250, 760, 902, 974
BmiI GGNNCC 1 cut(s) 823
BmrFI CCNGG 5 cut(s) 289, 425, 449, 972, 1357
BmrI ACTGGG 3 cut(s) 783, 1141, 1305
BmsI GCATC 6 cut(s) 166, 172, 715, 727, 826, 1087
BmuI ACTGGG 3 cut(s) 783, 1141, 1305
BpmI CTGGAG 1 cut(s) 1429
BpuMI CCSGG 1 cut(s) 1357
BsaBI GATNNNNATC 2 cut(s) 1101, 1239
BsaJI CCNNGG 7 cut(s) 253, 288, 423, 474, 618, 971, 1356
BsaXI ACNNNNNCTCC 2 cut(s) 1036, 1066
Bsc4I CCNNNNNNNGG 4 cut(s) 608, 815, 1316, 1403
Bse1I ACTGG 6 cut(s) 386, 778, 977, 1063, 1136, 1311
Bse21I CCTNAGG 1 cut(s) 489
Bse3DI GCAATG 1 cut(s) 339
Bse8I GATNNNNATC 2 cut(s) 1101, 1239
BseBI CCWGG 4 cut(s) 289, 425, 449, 972
BseDI CCNNGG 7 cut(s) 253, 288, 423, 474, 618, 971, 1356
BseGI GGATG 1 cut(s) 484
BseJI GATNNNNATC 2 cut(s) 1101, 1239
BseLI CCNNNNNNNGG 4 cut(s) 608, 815, 1316, 1403
BseMI GCAATG 1 cut(s) 339
BseMII CTCAG 2 cut(s) 185, 869
BseNI ACTGG 6 cut(s) 386, 778, 977, 1063, 1136, 1311
BseRI GAGGAG 1 cut(s) 260
BseSI GKGCMC 1 cut(s) 1363
BseXI GCAGC 2 cut(s) 293, 296
BseYI CCCAGC 1 cut(s) 116
BsgI GTGCAG 1 cut(s) 1368
BshFI GGCC 6 cut(s) 27, 761, 808, 970, 976, 1149
BsiHKAI GWGCWC 1 cut(s) 1005
BsiSI CCGG 1 cut(s) 1356
BslFI GGGAC 1 cut(s) 133
BslI CCNNNNNNNGG 4 cut(s) 608, 815, 1316, 1403
BsmAI GTCTC 2 cut(s) 273, 1432
BsmFI GGGAC 1 cut(s) 133
BsmI GAATGC 2 cut(s) 71, 1254
BsnI GGCC 6 cut(s) 27, 761, 808, 970, 976, 1149
Bsp1286I GDGCHC 3 cut(s) 202, 1005, 1363
Bsp143I GATC 7 cut(s) 135, 520, 688, 821, 1102, 1306, 1319
Bsp19I CCATGG 1 cut(s) 474
BspACI CCGC 1 cut(s) 1455
BspANI GGCC 6 cut(s) 27, 761, 808, 970, 976, 1149
BspCNI CTCAG 2 cut(s) 186, 868
BspLI GGNNCC 1 cut(s) 823
BspMAI CTGCAG 1 cut(s) 1440
BspPI GGATC 8 cut(s) 130, 515, 683, 816, 829, 1097, 1301, 1327
BspQI GCTCTTC 1 cut(s) 1010
BsrDI GCAATG 1 cut(s) 339
BsrI ACTGG 6 cut(s) 386, 778, 977, 1063, 1136, 1311
BssECI CCNNGG 7 cut(s) 253, 288, 423, 474, 618, 971, 1356
BssMI GATC 7 cut(s) 135, 520, 688, 821, 1102, 1306, 1319
BssT1I CCWWGG 3 cut(s) 253, 474, 618
Bst2UI CCWGG 4 cut(s) 289, 425, 449, 972
Bst4CI ACNGT 4 cut(s) 212, 541, 1024, 1303
Bst6I CTCTTC 1 cut(s) 1010
BstC8I GCNNGC 4 cut(s) 25, 29, 914, 1001
BstDEI CTNAG 4 cut(s) 194, 489, 855, 1290
BstDSI CCRYGG 1 cut(s) 474
BstENI CCTNNNNNAGG 1 cut(s) 1401
BstF5I GGATG 1 cut(s) 484
BstHHI GCGC 1 cut(s) 1090
BstKTI GATC 7 cut(s) 138, 523, 691, 824, 1105, 1309, 1322
BstMAI GTCTC 2 cut(s) 273, 1432
BstMBI GATC 7 cut(s) 135, 520, 688, 821, 1102, 1306, 1319
BstMWI GCNNNNNNNGC 2 cut(s) 428, 1223
BstNI CCWGG 4 cut(s) 289, 425, 449, 972
BstNSI RCATGY 6 cut(s) 52, 164, 193, 589, 721, 1272
BstSCI CCNGG 5 cut(s) 287, 423, 447, 970, 1355
BstSFI CTRYAG 3 cut(s) 537, 753, 1436
BstSLI GKGCMC 1 cut(s) 1363
BstV1I GCAGC 2 cut(s) 293, 296
BstX2I RGATCY 3 cut(s) 821, 1102, 1319
BstYI RGATCY 3 cut(s) 821, 1102, 1319
Bsu36I CCTNAGG 1 cut(s) 489
BsuRI GGCC 6 cut(s) 27, 761, 808, 970, 976, 1149
BtgI CCRYGG 1 cut(s) 474
BtsCI GGATG 1 cut(s) 484
BtsI GCAGTG 2 cut(s) 358, 507
BtsIMutI CAGTG 4 cut(s) 217, 358, 507, 984
Cac8I GCNNGC 4 cut(s) 25, 29, 914, 1001
CaiI CAGNNNCTG 1 cut(s) 1106
CfoI GCGC 1 cut(s) 1090
Cfr13I GGNCC 4 cut(s) 250, 760, 902, 974
Csp6I GTAC 3 cut(s) 93, 1044, 1350
CviQI GTAC 3 cut(s) 93, 1044, 1350
DdeI CTNAG 4 cut(s) 194, 489, 855, 1290
DpnI GATC 7 cut(s) 137, 522, 690, 823, 1104, 1308, 1321
DpnII GATC 7 cut(s) 135, 520, 688, 821, 1102, 1306, 1319
DraI TTTAAA 1 cut(s) 441
EaeI YGGCCR 1 cut(s) 806
Eam1104I CTCTTC 1 cut(s) 1010
EarI CTCTTC 1 cut(s) 1010
Eco130I CCWWGG 3 cut(s) 253, 474, 618
Eco147I AGGCCT 1 cut(s) 27
Eco24I GRGCYC 1 cut(s) 202
Eco47I GGWCC 2 cut(s) 250, 902
Eco57I CTGAAG 2 cut(s) 539, 1053
Eco81I CCTNAGG 1 cut(s) 489
EcoNI CCTNNNNNAGG 1 cut(s) 1401
EcoO109I RGGNCCY 2 cut(s) 250, 760
EcoRII CCWGG 4 cut(s) 287, 423, 447, 970
EcoT14I CCWWGG 3 cut(s) 253, 474, 618
EcoT22I ATGCAT 1 cut(s) 598
EcoT38I GRGCYC 1 cut(s) 202
ErhI CCWWGG 3 cut(s) 253, 474, 618
FaqI GGGAC 1 cut(s) 133
FauNDI CATATG 1 cut(s) 1222
FblI GTMKAC 1 cut(s) 1019
Fnu4HI GCNGC 3 cut(s) 282, 285, 1455
FokI GGATG 1 cut(s) 491
FriOI GRGCYC 1 cut(s) 202
Fsp4HI GCNGC 3 cut(s) 282, 285, 1455
FspBI CTAG 2 cut(s) 41, 254
GlaI GCGC 1 cut(s) 1089
GluI GCNGC 3 cut(s) 282, 285, 1455
GsaI CCCAGC 1 cut(s) 120
GsuI CTGGAG 1 cut(s) 1429
HaeIII GGCC 6 cut(s) 27, 761, 808, 970, 976, 1149
HapII CCGG 1 cut(s) 1356
HhaI GCGC 1 cut(s) 1090
Hin6I GCGC 1 cut(s) 1088
HinP1I GCGC 1 cut(s) 1088
HinfI GANTC 3 cut(s) 266, 877, 896
HpaII CCGG 1 cut(s) 1356
HphI GGTGA 1 cut(s) 635
Hpy166II GTNNAC 4 cut(s) 54, 85, 905, 1020
Hpy188I TCNGA 4 cut(s) 106, 858, 985, 1422
Hpy188III TCNNGA 1 cut(s) 1106
Hpy8I GTNNAC 4 cut(s) 54, 85, 905, 1020
HpyAV CCTTC 4 cut(s) 330, 563, 678, 1398
HpyCH4III ACNGT 4 cut(s) 212, 541, 1024, 1303
HpyF10VI GCNNNNNNNGC 2 cut(s) 428, 1223
HpyF3I CTNAG 4 cut(s) 194, 489, 855, 1290
HspAI GCGC 1 cut(s) 1088
Kzo9I GATC 7 cut(s) 135, 520, 688, 821, 1102, 1306, 1319
LguI GCTCTTC 1 cut(s) 1010
LmnI GCTCC 1 cut(s) 42
Lsp1109I GCAGC 2 cut(s) 293, 296
LweI GCATC 6 cut(s) 166, 172, 715, 727, 826, 1087
MaeI CTAG 2 cut(s) 41, 254
MaeIII GTNAC 2 cut(s) 611, 790
MalI GATC 7 cut(s) 137, 522, 690, 823, 1104, 1308, 1321
MboI GATC 7 cut(s) 135, 520, 688, 821, 1102, 1306, 1319
MboII GAAGA 5 cut(s) 971, 997, 1059, 1184, 1454
MfeI CAATTG 1 cut(s) 639
MflI RGATCY 3 cut(s) 821, 1102, 1319
MhlI GDGCHC 3 cut(s) 202, 1005, 1363
MlsI TGGCCA 1 cut(s) 808
MluNI TGGCCA 1 cut(s) 808
MlyI GAGTC 1 cut(s) 275
MmeI TCCRAC 2 cut(s) 1079, 1381
MnlI CCTC 9 cut(s) 238, 241, 349, 384, 514, 751, 773, 960, 1397
Mox20I TGGCCA 1 cut(s) 808
Mph1103I ATGCAT 1 cut(s) 598
MroXI GAANNNNTTC 1 cut(s) 1066
MscI TGGCCA 1 cut(s) 808
MseI TTAA 5 cut(s) 294, 440, 590, 1034, 1127
Msp20I TGGCCA 1 cut(s) 808
MspA1I CMGCKG 1 cut(s) 116
MspI CCGG 1 cut(s) 1356
MspR9I CCNGG 5 cut(s) 289, 425, 449, 972, 1357
MunI CAATTG 1 cut(s) 639
Mva1269I GAATGC 2 cut(s) 71, 1254
MvaI CCWGG 4 cut(s) 289, 425, 449, 972
MwoI GCNNNNNNNGC 2 cut(s) 428, 1223
NciI CCSGG 1 cut(s) 1357
NcoI CCATGG 1 cut(s) 474
NdeI CATATG 1 cut(s) 1222
NdeII GATC 7 cut(s) 135, 520, 688, 821, 1102, 1306, 1319
NlaIV GGNNCC 1 cut(s) 823
NmeAIII GCCGAG 1 cut(s) 1355
NsiI ATGCAT 1 cut(s) 598
NspI RCATGY 6 cut(s) 52, 164, 193, 589, 721, 1272
PceI AGGCCT 1 cut(s) 27
PciI ACATGT 2 cut(s) 160, 585
PciSI GCTCTTC 1 cut(s) 1010
PctI GAATGC 2 cut(s) 71, 1254
PdmI GAANNNNTTC 1 cut(s) 1066
PfeI GAWTC 2 cut(s) 877, 896
PkrI GCNGC 3 cut(s) 283, 286, 1456
PleI GAGTC 1 cut(s) 274
PpsI GAGTC 1 cut(s) 274
PpuMI RGGWCCY 1 cut(s) 250
PscI ACATGT 2 cut(s) 160, 585
Psp5II RGGWCCY 1 cut(s) 250
Psp6I CCWGG 4 cut(s) 287, 423, 447, 970
PspFI CCCAGC 1 cut(s) 116
PspGI CCWGG 4 cut(s) 287, 423, 447, 970
PspN4I GGNNCC 1 cut(s) 823
PspPI GGNCC 4 cut(s) 250, 760, 902, 974
PspPPI RGGWCCY 1 cut(s) 250
PstI CTGCAG 1 cut(s) 1440
PstNI CAGNNNCTG 1 cut(s) 1106
PsuI RGATCY 3 cut(s) 821, 1102, 1319
PvuII CAGCTG 1 cut(s) 116
RsaI GTAC 3 cut(s) 94, 1045, 1351
RsaNI GTAC 3 cut(s) 93, 1044, 1350
SapI GCTCTTC 1 cut(s) 1010
SaqAI TTAA 5 cut(s) 294, 440, 590, 1034, 1127
SatI GCNGC 3 cut(s) 282, 285, 1455
Sau3AI GATC 7 cut(s) 135, 520, 688, 821, 1102, 1306, 1319
Sau96I GGNCC 4 cut(s) 250, 760, 902, 974
SchI GAGTC 1 cut(s) 275
ScrFI CCNGG 5 cut(s) 289, 425, 449, 972, 1357
SduI GDGCHC 3 cut(s) 202, 1005, 1363
SfaNI GCATC 6 cut(s) 166, 172, 715, 727, 826, 1087
SfcI CTRYAG 3 cut(s) 537, 753, 1436
SinI GGWCC 2 cut(s) 250, 902
SseBI AGGCCT 1 cut(s) 27
SsiI CCGC 1 cut(s) 1455
SspMI CTAG 2 cut(s) 41, 254
StuI AGGCCT 1 cut(s) 27
StyD4I CCNGG 5 cut(s) 287, 423, 447, 970, 1355
StyI CCWWGG 3 cut(s) 253, 474, 618
TaaI ACNGT 4 cut(s) 212, 541, 1024, 1303
TatI WGTACW 1 cut(s) 1349
TauI GCSGC 1 cut(s) 1457
TfiI GAWTC 2 cut(s) 877, 896
Tru1I TTAA 5 cut(s) 294, 440, 590, 1034, 1127
Tru9I TTAA 5 cut(s) 294, 440, 590, 1034, 1127
TscAI CASTG 4 cut(s) 217, 358, 514, 984
TseI GCWGC 2 cut(s) 281, 284
TspDTI ATGAA 4 cut(s) 419, 843, 972, 1209
TspGWI ACGGA 2 cut(s) 31, 809
TspRI CASTG 4 cut(s) 217, 358, 514, 984
VpaK11BI GGWCC 2 cut(s) 250, 902
XagI CCTNNNNNAGG 1 cut(s) 1401
XapI RAATTY 6 cut(s) 369, 436, 574, 630, 1063, 1328
XceI RCATGY 6 cut(s) 52, 164, 193, 589, 721, 1272
XmaJI CCTAGG 1 cut(s) 253
XmiI GTMKAC 1 cut(s) 1019
XmnI GAANNNNTTC 1 cut(s) 1066
XspI CTAG 2 cut(s) 41, 254
Zsp2I ATGCAT 1 cut(s) 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.