AT3G13898

Epidermal patterning factor proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0006343
Physical Location & Seq
Forward (+)
4583315 .. 4584487
1173 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G13898.1

Sequence Viewer

Length: 372 bp
ATGAGAGTGAAAGAAACAGGAAAGGGTTTTGTGGTTATATTAATGGTGATGATACCAATAGTGAGCTGGGTTGATGCAACAAGCAGGCCTATTGCTTCCAGTCACGTTTCTTTTTATCCAGAGATAATAAAGCCGCAGGCTGCAGAAGAAAACTCTAGGAGACGCATTTTGAACCCCAATGAGAATAAAGAAGAGATAGTGAAAAGAAGAAGAAGAATAGGATCAAAGCCACCAAGTTGTGAGAAAAAATGCTATGGATGTGAGCCATGTGAAGCAATCCAATTCCCTACCATTTCTTCAATCCCTCACCTATCTCCTCATTATGCTAATTACCAACCTGAGGGTTGGAGATGCCATTGTCCTCCTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EPF

Protein Analysis

123

Amino Acids

14.04

Weight (kDa)

9.15

Isoelectric Point (pI)

82.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EPF PF17181 72 - 121 1.8e-16 Epidermal patterning factor proteins
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 134
AclWI GGATC 1 cut(s) 229
AfiI CCNNNNNNNGG 1 cut(s) 340
AgsI TTSAA 2 cut(s) 172, 300
AluBI AGCT 1 cut(s) 66
AluI AGCT 1 cut(s) 66
Alw26I GTCTC 1 cut(s) 154
AlwI GGATC 1 cut(s) 229
AoxI GGCC 1 cut(s) 86
ApeKI GCWGC 1 cut(s) 140
AseI ATTAAT 1 cut(s) 41
AsuHPI GGTGA 2 cut(s) 58, 299
AxyI CCTNAGG 1 cut(s) 339
BbvI GCAGC 1 cut(s) 127
BcoDI GTCTC 1 cut(s) 154
BfaI CTAG 1 cut(s) 156
BfmI CTRYAG 1 cut(s) 141
BisI GCNGC 2 cut(s) 134, 141
BlsI GCNGC 2 cut(s) 135, 142
BmsI GCATC 2 cut(s) 64, 341
Bsc4I CCNNNNNNNGG 1 cut(s) 340
Bse1I ACTGG 1 cut(s) 99
Bse21I CCTNAGG 1 cut(s) 339
BseGI GGATG 1 cut(s) 263
BseLI CCNNNNNNNGG 1 cut(s) 340
BseMII CTCAG 1 cut(s) 330
BseNI ACTGG 1 cut(s) 99
BseRI GAGGAG 2 cut(s) 306, 354
BseXI GCAGC 1 cut(s) 127
BseYI CCCAGC 1 cut(s) 66
BshFI GGCC 1 cut(s) 88
BslI CCNNNNNNNGG 1 cut(s) 340
BsmAI GTCTC 1 cut(s) 154
BsmBI CGTCTC 1 cut(s) 154
BsnI GGCC 1 cut(s) 88
Bsp143I GATC 1 cut(s) 221
BspACI CCGC 1 cut(s) 134
BspANI GGCC 1 cut(s) 88
BspCNI CTCAG 1 cut(s) 331
BspMAI CTGCAG 1 cut(s) 145
BspPI GGATC 1 cut(s) 229
BsrI ACTGG 1 cut(s) 99
BssMI GATC 1 cut(s) 221
Bst6I CTCTTC 1 cut(s) 186
BstC8I GCNNGC 2 cut(s) 86, 138
BstDEI CTNAG 1 cut(s) 339
BstF5I GGATG 1 cut(s) 263
BstKTI GATC 1 cut(s) 224
BstMAI GTCTC 1 cut(s) 154
BstMBI GATC 1 cut(s) 221
BstSFI CTRYAG 1 cut(s) 141
BstV1I GCAGC 1 cut(s) 127
Bsu36I CCTNAGG 1 cut(s) 339
BsuRI GGCC 1 cut(s) 88
BtsCI GGATG 1 cut(s) 263
Cac8I GCNNGC 2 cut(s) 86, 138
CseI GACGC 1 cut(s) 171
CviAII CATG 1 cut(s) 267
CviJI RGCY 6 cut(s) 66, 88, 133, 140, 229, 265
CviKI_1 RGCY 6 cut(s) 66, 88, 133, 140, 229, 265
DdeI CTNAG 1 cut(s) 339
DpnI GATC 1 cut(s) 223
DpnII GATC 1 cut(s) 221
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
Eco147I AGGCCT 1 cut(s) 88
Eco81I CCTNAGG 1 cut(s) 339
Esp3I CGTCTC 1 cut(s) 154
FaeI CATG 1 cut(s) 270
FaiI YATR 4 cut(s) 38, 255, 268, 324
FatI CATG 1 cut(s) 266
Fnu4HI GCNGC 2 cut(s) 134, 141
FokI GGATG 1 cut(s) 270
Fsp4HI GCNGC 2 cut(s) 134, 141
FspBI CTAG 1 cut(s) 156
GluI GCNGC 2 cut(s) 134, 141
GsaI CCCAGC 1 cut(s) 70
HaeIII GGCC 1 cut(s) 88
HgaI GACGC 1 cut(s) 171
Hin1II CATG 1 cut(s) 270
HphI GGTGA 2 cut(s) 58, 299
Hpy188III TCNNGA 1 cut(s) 119
HpyCH4IV ACGT 1 cut(s) 105
HpyCH4V TGCA 2 cut(s) 77, 143
HpyF3I CTNAG 1 cut(s) 339
HpySE526I ACGT 1 cut(s) 105
Hsp92II CATG 1 cut(s) 270
Kzo9I GATC 1 cut(s) 221
LpnPI CCDG 7 cut(s) 3, 52, 70, 112, 122, 132, 351
Lsp1109I GCAGC 1 cut(s) 127
LweI GCATC 2 cut(s) 64, 341
MaeI CTAG 1 cut(s) 156
MaeII ACGT 1 cut(s) 105
MaeIII GTNAC 1 cut(s) 101
MalI GATC 1 cut(s) 223
MboI GATC 1 cut(s) 221
MboII GAAGA 6 cut(s) 158, 203, 219, 222, 225, 288
MluCI AATT 2 cut(s) 281, 328
MmeI TCCRAC 1 cut(s) 326
MnlI CCTC 4 cut(s) 315, 327, 334, 372
MseI TTAA 2 cut(s) 41, 370
NdeII GATC 1 cut(s) 221
NlaIII CATG 1 cut(s) 270
NmuCI GTSAC 1 cut(s) 101
PceI AGGCCT 1 cut(s) 88
PkrI GCNGC 2 cut(s) 135, 142
PshBI ATTAAT 1 cut(s) 41
PspFI CCCAGC 1 cut(s) 66
PstI CTGCAG 1 cut(s) 145
SaqAI TTAA 2 cut(s) 41, 370
SatI GCNGC 2 cut(s) 134, 141
Sau3AI GATC 1 cut(s) 221
SetI ASST 4 cut(s) 68, 108, 312, 340
SfaNI GCATC 2 cut(s) 64, 341
SfcI CTRYAG 1 cut(s) 141
Sse9I AATT 2 cut(s) 281, 328
SseBI AGGCCT 1 cut(s) 88
SsiI CCGC 1 cut(s) 134
SspMI CTAG 1 cut(s) 156
StuI AGGCCT 1 cut(s) 88
TaiI ACGT 1 cut(s) 108
TasI AATT 2 cut(s) 281, 328
TauI GCSGC 1 cut(s) 136
Tru1I TTAA 2 cut(s) 41, 370
Tru9I TTAA 2 cut(s) 41, 370
TseFI GTSAC 1 cut(s) 101
TseI GCWGC 1 cut(s) 140
Tsp45I GTSAC 1 cut(s) 101
VspI ATTAAT 1 cut(s) 41
XcmI CCANNNNNNNNNTGG 1 cut(s) 63
XspI CTAG 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.