Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0006343

Physical Location & Seq

Genomic Coordinates Reverse (-)

16648820 .. 16649890

Gene Structure 1071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1190400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGTACATCTTGTGCTGTGAGTTTAATCATTTGTGGGTTGAAGCAATGAGGAAAGTTTATTGGTTTGTGATAGCTCTGCAAATATTGAGTTGGGTTTCTGCAACAAGCAGGCCTTTTCCTCCAAATGCAGGTCCTGGTGTTCATCAACCAGGCACAGGCAAAAGCCCAGAGTCTTTGCTAGCTACCCTACAAGAGGGTTCAAAGAGCATCAATGGAGGAGTGGGAAAGATGAATGCAATAGCAAACTACAGAGAATTCAGCAAAATAGGGTCAAGCCCTCCAAGCTGTGACCATAAGTGTTATGGGTGCACTCCCTGTGAAGCCATTCAAGTGCCCACCACCAAAAAGCAAACCTCCCATTTGAGGGTGCAGTATGCAAACTACGAGCCCGAGGGTTGGAAATGCAAGTGTGGCCCAACTTATTACACCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009987 GO:0010016 GO:0010052 GO:0010103 GO:0010374 GO:0030154 GO:0032501 GO:0032502 GO:0048367 GO:0048731 GO:0048856 GO:0048869 GO:0090558 GO:0090626 GO:0090627 GO:0090698

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EPF

Protein Analysis

145

Amino Acids

15.96

Weight (kDa)

8.78

Isoelectric Point (pI)

50.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EPF	PF17181	88 - 144	3.3e-21	Epidermal patterning factor proteins

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006343)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13898
fragaria_vesca	FvH4_1g07850 FvH4_6g33980
malus_domestica	MD09G1190400.v1.1
prunus_persica	Prupe.3G046300_v2.0.a1 Prupe.3G046300_v2.0.a1 Prupe.3G046300_v2.0.a1 Prupe.3G046300_v2.0.a1 Prupe.3G046300_v2.0.a1 Prupe.3G046300_v2.0.a1 Prupe.7G206500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0093721 RchiOBHm_Chr2g0143991
rosa_laevigata	RLG00000016432 RLG00000020066
rosa_multiflora	Rmu_sc0017976.1_g000002
rosa_roxburghii	Rroxscaffold_2G00147850
rosa_rugosa	Rorug02G0385100
rosa_samantha	Rh2AG085800 Rh2AG437800 Rh2BG086000 Rh2BG446300 Rh2CG088400 Rh2CG424400 Rh2DG084000 Rh2DG456500
rosa_wichuraiana	Rw2G035750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	119
AcsI	RAATTY	1 cut(s)	254
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	6 cut(s)	128, 155, 193, 363, 364, 396
AgsI	TTSAA	3 cut(s)	41, 201, 329
AjnI	CCWGG	2 cut(s)	133, 148
AluBI	AGCT	3 cut(s)	74, 182, 285
AluI	AGCT	3 cut(s)	74, 182, 285
Alw21I	GWGCWC	1 cut(s)	311
Alw44I	GTGCAC	1 cut(s)	307
AlwNI	CAGNNNCTG	1 cut(s)	134
Ama87I	CYCGRG	1 cut(s)	389
AoxI	GGCC	2 cut(s)	110, 412
ApaLI	GTGCAC	1 cut(s)	307
ApoI	RAATTY	1 cut(s)	254
Asp700I	GAANNNNTTC	1 cut(s)	324
AspS9I	GGNCC	2 cut(s)	131, 413
AsuNHI	GCTAGC	1 cut(s)	178
AvaI	CYCGRG	1 cut(s)	389
AvaII	GGWCC	1 cut(s)	131
BaeGI	GKGCMC	2 cut(s)	311, 336
BanII	GRGCYC	1 cut(s)	390
Bbv12I	GWGCWC	1 cut(s)	311
BciT130I	CCWGG	2 cut(s)	135, 150
BfaI	CTAG	1 cut(s)	179
BfmI	CTRYAG	1 cut(s)	247
BfuAI	ACCTGC	1 cut(s)	119
Bme1390I	CCNGG	2 cut(s)	135, 150
Bme18I	GGWCC	1 cut(s)	131
BmeT110I	CYCGRG	1 cut(s)	389
BmgT120I	GGNCC	2 cut(s)	131, 413
BmrFI	CCNGG	2 cut(s)	135, 150
BmsI	GCATC	1 cut(s)	216
BmtI	GCTAGC	1 cut(s)	182
BsaJI	CCNNGG	1 cut(s)	390
Bsc4I	CCNNNNNNNGG	6 cut(s)	128, 155, 193, 363, 364, 396
Bse3DI	GCAATG	1 cut(s)	51
BseBI	CCWGG	2 cut(s)	135, 150
BseDI	CCNNGG	1 cut(s)	390
BseLI	CCNNNNNNNGG	6 cut(s)	128, 155, 193, 363, 364, 396
BseMI	GCAATG	1 cut(s)	51
BseRI	GAGGAG	1 cut(s)	231
BseSI	GKGCMC	2 cut(s)	311, 336
BsgI	GTGCAG	1 cut(s)	389
BshFI	GGCC	2 cut(s)	112, 414
BsiHKAI	GWGCWC	1 cut(s)	311
BsiHKCI	CYCGRG	1 cut(s)	389
BslI	CCNNNNNNNGG	6 cut(s)	128, 155, 193, 363, 364, 396
BsmI	GAATGC	1 cut(s)	238
BsnI	GGCC	2 cut(s)	112, 414
BsoBI	CYCGRG	1 cut(s)	389
Bsp1286I	GDGCHC	3 cut(s)	311, 336, 390
Bsp1407I	TGTACA	1 cut(s)	3
BspANI	GGCC	2 cut(s)	112, 414
BspMI	ACCTGC	1 cut(s)	119
BspOI	GCTAGC	1 cut(s)	182
BsrDI	GCAATG	1 cut(s)	51
BsrGI	TGTACA	1 cut(s)	3
BssECI	CCNNGG	1 cut(s)	390
Bst2UI	CCWGG	2 cut(s)	135, 150
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	2 cut(s)	110, 180
BstENI	CCTNNNNNAGG	1 cut(s)	191
BstMWI	GCNNNNNNNGC	2 cut(s)	282, 411
BstNI	CCWGG	2 cut(s)	135, 150
BstSCI	CCNGG	2 cut(s)	133, 148
BstSFI	CTRYAG	1 cut(s)	247
BstSLI	GKGCMC	2 cut(s)	311, 336
BsuRI	GGCC	2 cut(s)	112, 414
BveI	ACCTGC	1 cut(s)	119
Cac8I	GCNNGC	2 cut(s)	110, 180
CaiI	CAGNNNCTG	1 cut(s)	134
Cfr13I	GGNCC	2 cut(s)	131, 413
Csp6I	GTAC	1 cut(s)	4
CviJI	RGCY	9 cut(s)	74, 112, 165, 182, 276, 285, 323, 388, 414
CviKI_1	RGCY	9 cut(s)	74, 112, 165, 182, 276, 285, 323, 388, 414
CviQI	GTAC	1 cut(s)	4
Eco147I	AGGCCT	1 cut(s)	112
Eco24I	GRGCYC	1 cut(s)	390
Eco47I	GGWCC	1 cut(s)	131
Eco88I	CYCGRG	1 cut(s)	389
EcoNI	CCTNNNNNAGG	1 cut(s)	191
EcoO109I	RGGNCCY	1 cut(s)	131
EcoRI	GAATTC	1 cut(s)	254
EcoRII	CCWGG	2 cut(s)	133, 148
EcoT38I	GRGCYC	1 cut(s)	390
FaiI	YATR	3 cut(s)	294, 303, 375
FalI	AAGNNNNNCTT	2 cut(s)	97, 129
FriOI	GRGCYC	1 cut(s)	390
FspBI	CTAG	1 cut(s)	179
HaeIII	GGCC	2 cut(s)	112, 414
HinfI	GANTC	1 cut(s)	170
Hpy166II	GTNNAC	1 cut(s)	309
Hpy8I	GTNNAC	1 cut(s)	309
HpyCH4V	TGCA	8 cut(s)	79, 101, 128, 236, 309, 370, 377, 405
HpyF10VI	GCNNNNNNNGC	2 cut(s)	282, 411
LpnPI	CCDG	9 cut(s)	94, 114, 120, 135, 141, 147, 162, 180, 328
LweI	GCATC	1 cut(s)	216
MaeI	CTAG	1 cut(s)	179
MaeIII	GTNAC	1 cut(s)	287
MhlI	GDGCHC	3 cut(s)	311, 336, 390
MluCI	AATT	1 cut(s)	254
MlyI	GAGTC	1 cut(s)	179
MmeI	TCCRAC	1 cut(s)	377
MnlI	CCTC	8 cut(s)	42, 129, 187, 209, 288, 357, 364, 385
MroXI	GAANNNNTTC	1 cut(s)	324
MseI	TTAA	1 cut(s)	24
MslI	CAYNNNNRTG	1 cut(s)	329
MspR9I	CCNGG	2 cut(s)	135, 150
Mva1269I	GAATGC	1 cut(s)	238
MvaI	CCWGG	2 cut(s)	135, 150
MwoI	GCNNNNNNNGC	2 cut(s)	282, 411
NheI	GCTAGC	1 cut(s)	178
NmuCI	GTSAC	1 cut(s)	287
PceI	AGGCCT	1 cut(s)	112
PctI	GAATGC	1 cut(s)	238
PdmI	GAANNNNTTC	1 cut(s)	324
PleI	GAGTC	1 cut(s)	178
PpsI	GAGTC	1 cut(s)	178
PpuMI	RGGWCCY	1 cut(s)	131
Psp5II	RGGWCCY	1 cut(s)	131
Psp6I	CCWGG	2 cut(s)	133, 148
PspGI	CCWGG	2 cut(s)	133, 148
PspPI	GGNCC	2 cut(s)	131, 413
PspPPI	RGGWCCY	1 cut(s)	131
PstNI	CAGNNNCTG	1 cut(s)	134
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	1 cut(s)	329
SaqAI	TTAA	1 cut(s)	24
Sau96I	GGNCC	2 cut(s)	131, 413
SchI	GAGTC	1 cut(s)	179
ScrFI	CCNGG	2 cut(s)	135, 150
SduI	GDGCHC	3 cut(s)	311, 336, 390
SetI	ASST	5 cut(s)	76, 133, 184, 287, 356
SfaNI	GCATC	1 cut(s)	216
SfcI	CTRYAG	1 cut(s)	247
SinI	GGWCC	1 cut(s)	131
SmiMI	CAYNNNNRTG	1 cut(s)	329
Sse9I	AATT	1 cut(s)	254
SseBI	AGGCCT	1 cut(s)	112
SspI	AATATT	1 cut(s)	84
SspMI	CTAG	1 cut(s)	179
StuI	AGGCCT	1 cut(s)	112
StyD4I	CCNGG	2 cut(s)	133, 148
TasI	AATT	1 cut(s)	254
TatI	WGTACW	1 cut(s)	3
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
TseFI	GTSAC	1 cut(s)	287
Tsp45I	GTSAC	1 cut(s)	287
TspDTI	ATGAA	2 cut(s)	131, 245
VneI	GTGCAC	1 cut(s)	307
VpaK11BI	GGWCC	1 cut(s)	131
XagI	CCTNNNNNAGG	1 cut(s)	191
XapI	RAATTY	1 cut(s)	254
XcmI	CCANNNNNNNNNTGG	1 cut(s)	299
XmnI	GAANNNNTTC	1 cut(s)	324
XspI	CTAG	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.