Rh2BG446300

EPIDERMAL PATTERNING FACTOR-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0006343
Physical Location & Seq
Forward (+)
63099752 .. 63100670
919 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG446300.1

Sequence Viewer

Length: 351 bp
ATGAGTTGGGTTTCTGCAACAAGCAGACTTTTTCCTCCAAGTAATGGTCTAGATGTTCATCAAGCAGGTTCAGGACCGAATGCAGATCAGTCTTCTGATGTTACCTTGGAACAGGGATTAACAAGCTCAACTATTGGAGTGGCAAAGAAAAATGAAATAGCAAACTACAGTGGGGGAAGCAAAATAGGGTCAAGCCCTCCAAGCTGTGAGAACAAGTGTTATGGATGCACTCCATGTGAAGCTATTCAAGTGCCCACTACCAAAAAGCACACCCATTTCAGGGTTCAGTATGCAAATTATGAGCCAGAGGGCTGGAAATGCAAGTGTGGCCCTTCATTCTACAGCCCTTAG

Protein Analysis

116

Amino Acids

12.39

Weight (kDa)

7.6

Isoelectric Point (pI)

55.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EPF PF17181 61 - 116 1.1e-21 Epidermal patterning factor proteins
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 56
AccB7I CCANNNNNTGG 1 cut(s) 44
AfiI CCNNNNNNNGG 3 cut(s) 44, 279, 280
AgsI TTSAA 1 cut(s) 248
AluBI AGCT 3 cut(s) 126, 204, 242
AluI AGCT 3 cut(s) 126, 204, 242
AoxI GGCC 1 cut(s) 328
Asp700I GAANNNNTTC 1 cut(s) 243
AspS9I GGNCC 2 cut(s) 74, 329
AvaII GGWCC 1 cut(s) 74
BaeGI GKGCMC 1 cut(s) 255
BbsI GAAGAC 1 cut(s) 84
BfaI CTAG 1 cut(s) 50
BfmI CTRYAG 2 cut(s) 166, 340
BfuAI ACCTGC 1 cut(s) 56
Bme18I GGWCC 1 cut(s) 74
BmgT120I GGNCC 2 cut(s) 74, 329
BmsI GCATC 1 cut(s) 215
BpiI GAAGAC 1 cut(s) 84
BsaBI GATNNNNATC 1 cut(s) 57
BsaJI CCNNGG 1 cut(s) 105
Bsc4I CCNNNNNNNGG 3 cut(s) 44, 279, 280
Bse8I GATNNNNATC 1 cut(s) 57
BseDI CCNNGG 1 cut(s) 105
BseGI GGATG 1 cut(s) 230
BseJI GATNNNNATC 1 cut(s) 57
BseLI CCNNNNNNNGG 3 cut(s) 44, 279, 280
BseSI GKGCMC 1 cut(s) 255
BshFI GGCC 1 cut(s) 330
BslI CCNNNNNNNGG 3 cut(s) 44, 279, 280
BsmI GAATGC 1 cut(s) 85
BsnI GGCC 1 cut(s) 330
Bsp1286I GDGCHC 1 cut(s) 255
Bsp143I GATC 1 cut(s) 85
BspANI GGCC 1 cut(s) 330
BspMI ACCTGC 1 cut(s) 56
BssECI CCNNGG 1 cut(s) 105
BssMI GATC 1 cut(s) 85
BssT1I CCWWGG 1 cut(s) 105
Bst4CI ACNGT 1 cut(s) 170
BstDEI CTNAG 1 cut(s) 348
BstF5I GGATG 1 cut(s) 230
BstKTI GATC 1 cut(s) 88
BstMBI GATC 1 cut(s) 85
BstMWI GCNNNNNNNGC 3 cut(s) 201, 318, 327
BstSFI CTRYAG 2 cut(s) 166, 340
BstSLI GKGCMC 1 cut(s) 255
BstV2I GAAGAC 1 cut(s) 84
BstXI CCANNNNNNTGG 1 cut(s) 312
BsuRI GGCC 1 cut(s) 330
BtsCI GGATG 1 cut(s) 230
BtsIMutI CAGTG 1 cut(s) 175
BveI ACCTGC 1 cut(s) 56
Cfr13I GGNCC 2 cut(s) 74, 329
CviAII CATG 1 cut(s) 234
CviJI RGCY 8 cut(s) 126, 195, 204, 242, 304, 312, 330, 345
CviKI_1 RGCY 8 cut(s) 126, 195, 204, 242, 304, 312, 330, 345
DdeI CTNAG 1 cut(s) 348
DpnI GATC 1 cut(s) 87
DpnII GATC 1 cut(s) 85
Eco130I CCWWGG 1 cut(s) 105
Eco47I GGWCC 1 cut(s) 74
EcoT14I CCWWGG 1 cut(s) 105
ErhI CCWWGG 1 cut(s) 105
FaeI CATG 1 cut(s) 237
FaiI YATR 4 cut(s) 222, 235, 291, 300
FatI CATG 1 cut(s) 233
FokI GGATG 1 cut(s) 237
FspBI CTAG 1 cut(s) 50
HaeIII GGCC 1 cut(s) 330
Hin1II CATG 1 cut(s) 237
Hpy188I TCNGA 1 cut(s) 97
Hpy188III TCNNGA 2 cut(s) 50, 72
HpyAV CCTTC 1 cut(s) 342
HpyCH4III ACNGT 1 cut(s) 170
HpyCH4V TGCA 5 cut(s) 17, 83, 228, 293, 321
HpyF10VI GCNNNNNNNGC 3 cut(s) 201, 318, 327
HpyF3I CTNAG 1 cut(s) 348
Hsp92II CATG 1 cut(s) 237
Kzo9I GATC 1 cut(s) 85
LpnPI CCDG 6 cut(s) 51, 57, 98, 265, 298, 318
LweI GCATC 1 cut(s) 215
MaeI CTAG 1 cut(s) 50
MaeIII GTNAC 1 cut(s) 100
MalI GATC 1 cut(s) 87
MboI GATC 1 cut(s) 85
MboII GAAGA 1 cut(s) 84
MhlI GDGCHC 1 cut(s) 255
MluCI AATT 1 cut(s) 295
MnlI CCTC 3 cut(s) 45, 207, 301
MroXI GAANNNNTTC 1 cut(s) 243
MseI TTAA 1 cut(s) 119
Mva1269I GAATGC 1 cut(s) 85
MwoI GCNNNNNNNGC 3 cut(s) 201, 318, 327
NdeII GATC 1 cut(s) 85
NlaIII CATG 1 cut(s) 237
PctI GAATGC 1 cut(s) 85
PdmI GAANNNNTTC 1 cut(s) 243
PflMI CCANNNNNTGG 1 cut(s) 44
PspPI GGNCC 2 cut(s) 74, 329
SaqAI TTAA 1 cut(s) 119
Sau3AI GATC 1 cut(s) 85
Sau96I GGNCC 2 cut(s) 74, 329
SduI GDGCHC 1 cut(s) 255
SetI ASST 5 cut(s) 70, 107, 128, 206, 244
SfaNI GCATC 1 cut(s) 215
SfcI CTRYAG 2 cut(s) 166, 340
SinI GGWCC 1 cut(s) 74
Sse9I AATT 1 cut(s) 295
SspMI CTAG 1 cut(s) 50
StyI CCWWGG 1 cut(s) 105
TaaI ACNGT 1 cut(s) 170
TaqII GACCGA 1 cut(s) 91
TasI AATT 1 cut(s) 295
Tru1I TTAA 1 cut(s) 119
Tru9I TTAA 1 cut(s) 119
TscAI CASTG 1 cut(s) 175
TspDTI ATGAA 3 cut(s) 47, 168, 324
TspRI CASTG 1 cut(s) 175
Van91I CCANNNNNTGG 1 cut(s) 44
VpaK11BI GGWCC 1 cut(s) 74
XbaI TCTAGA 1 cut(s) 49
XmnI GAANNNNTTC 1 cut(s) 243
XspI CTAG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.