FvH4_6g33980

EPIDERMAL PATTERNING FACTOR-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0006343
Physical Location & Seq
Forward (+)
26887331 .. 26888373
1043 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g33980.t1

Sequence Viewer

Length: 396 bp
ATGAAGGGAATAAGTTATTGGTTTGTTATAGCTCTTCAAATCATGAGTTGGGTTTCTGCAACAAGCAGACTTTTTCCTCCAAGTAATGGTCTTGATGTTCATGAAGCAGGCTCAGGACAGAATCCACATCAGTCTTCACAAGTTACCTTGGAACAGGAATTGGCAAACTCAACCGGTGGAGAGGCAAAGATGAACGAAATCGCAAATTTCAGAGGGGGAAGCAAAATAGGGTCAAGCCCTCCAAGCTGTGAGAACAAGTGTTATGGATGCACTCCATGTGAAGCTATTCAAGTGCCTACTAATACCAAGAAGCTAAACCATTTCAGGGTTCAGTATGCAAATTATGAGCCAGAGGGTTGGAAATGCAAGTGTGGCCCTTCTTTCTACAGCCCTTAG

Protein Analysis

132

Amino Acids

14.34

Weight (kDa)

7.6

Isoelectric Point (pI)

50.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EPF PF17181 75 - 131 1.8e-21 Epidermal patterning factor proteins
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 86
AcsI RAATTY 1 cut(s) 205
AfiI CCNNNNNNNGG 2 cut(s) 86, 325
AgeI ACCGGT 1 cut(s) 173
AgsI TTSAA 2 cut(s) 38, 290
AjuI GAANNNNNNNTTGG 1 cut(s) 33
AluBI AGCT 4 cut(s) 32, 246, 284, 313
AluI AGCT 4 cut(s) 32, 246, 284, 313
AoxI GGCC 1 cut(s) 373
ApoI RAATTY 1 cut(s) 205
AsiGI ACCGGT 1 cut(s) 173
Asp700I GAANNNNTTC 1 cut(s) 285
AspS9I GGNCC 1 cut(s) 374
BbsI GAAGAC 1 cut(s) 126
BfmI CTRYAG 1 cut(s) 385
BmgT120I GGNCC 1 cut(s) 374
BmsI GCATC 1 cut(s) 257
BpiI GAAGAC 1 cut(s) 126
Bpu10I CCTNAGC 1 cut(s) 112
BsaJI CCNNGG 1 cut(s) 147
BsaWI WCCGGW 1 cut(s) 173
Bsc4I CCNNNNNNNGG 2 cut(s) 86, 325
Bse118I RCCGGY 1 cut(s) 173
BseDI CCNNGG 1 cut(s) 147
BseGI GGATG 1 cut(s) 272
BseLI CCNNNNNNNGG 2 cut(s) 86, 325
BseMII CTCAG 1 cut(s) 126
BshFI GGCC 1 cut(s) 375
BshTI ACCGGT 1 cut(s) 173
BsiSI CCGG 1 cut(s) 174
BslI CCNNNNNNNGG 2 cut(s) 86, 325
BsnI GGCC 1 cut(s) 375
BspANI GGCC 1 cut(s) 375
BspCNI CTCAG 1 cut(s) 125
BspHI TCATGA 2 cut(s) 42, 100
BspQI GCTCTTC 1 cut(s) 39
BsrFI RCCGGY 1 cut(s) 173
BssAI RCCGGY 1 cut(s) 173
BssECI CCNNGG 1 cut(s) 147
BssT1I CCWWGG 1 cut(s) 147
Bst6I CTCTTC 1 cut(s) 39
BstC8I GCNNGC 1 cut(s) 109
BstDEI CTNAG 2 cut(s) 112, 393
BstF5I GGATG 1 cut(s) 272
BstMWI GCNNNNNNNGC 2 cut(s) 243, 372
BstSFI CTRYAG 1 cut(s) 385
BstV2I GAAGAC 1 cut(s) 126
BstXI CCANNNNNNTGG 1 cut(s) 357
BsuRI GGCC 1 cut(s) 375
BtsCI GGATG 1 cut(s) 272
Cac8I GCNNGC 1 cut(s) 109
CciI TCATGA 2 cut(s) 42, 100
Cfr10I RCCGGY 1 cut(s) 173
Cfr13I GGNCC 1 cut(s) 374
CspAI ACCGGT 1 cut(s) 173
CviAII CATG 3 cut(s) 43, 101, 276
CviJI RGCY 9 cut(s) 32, 111, 237, 246, 284, 313, 349, 375, 390
CviKI_1 RGCY 9 cut(s) 32, 111, 237, 246, 284, 313, 349, 375, 390
DdeI CTNAG 2 cut(s) 112, 393
Eam1104I CTCTTC 1 cut(s) 39
EarI CTCTTC 1 cut(s) 39
Eco130I CCWWGG 1 cut(s) 147
EcoT14I CCWWGG 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 147
FaeI CATG 3 cut(s) 46, 104, 279
FaiI YATR 7 cut(s) 29, 44, 102, 264, 277, 336, 345
FatI CATG 3 cut(s) 42, 100, 275
FokI GGATG 1 cut(s) 279
HaeIII GGCC 1 cut(s) 375
HapII CCGG 1 cut(s) 174
Hin1II CATG 3 cut(s) 46, 104, 279
HinfI GANTC 1 cut(s) 121
HpaII CCGG 1 cut(s) 174
Hpy188I TCNGA 1 cut(s) 212
Hpy188III TCNNGA 4 cut(s) 43, 92, 101, 114
HpyAV CCTTC 1 cut(s) 387
HpyCH4V TGCA 4 cut(s) 59, 270, 338, 366
HpyF10VI GCNNNNNNNGC 2 cut(s) 243, 372
HpyF3I CTNAG 2 cut(s) 112, 393
Hsp92II CATG 3 cut(s) 46, 104, 279
LguI GCTCTTC 1 cut(s) 39
LpnPI CCDG 6 cut(s) 93, 99, 140, 187, 310, 363
LweI GCATC 1 cut(s) 257
MaeIII GTNAC 1 cut(s) 142
MboII GAAGA 2 cut(s) 26, 126
MluCI AATT 3 cut(s) 158, 205, 340
MmeI TCCRAC 1 cut(s) 338
MnlI CCTC 5 cut(s) 87, 175, 206, 249, 346
MroXI GAANNNNTTC 1 cut(s) 285
MspI CCGG 1 cut(s) 174
MwoI GCNNNNNNNGC 2 cut(s) 243, 372
NlaIII CATG 3 cut(s) 46, 104, 279
PagI TCATGA 2 cut(s) 42, 100
PciSI GCTCTTC 1 cut(s) 39
PdmI GAANNNNTTC 1 cut(s) 285
PfeI GAWTC 1 cut(s) 121
PflMI CCANNNNNTGG 1 cut(s) 86
PinAI ACCGGT 1 cut(s) 173
PspPI GGNCC 1 cut(s) 374
SapI GCTCTTC 1 cut(s) 39
Sau96I GGNCC 1 cut(s) 374
SetI ASST 5 cut(s) 34, 149, 248, 286, 315
SfaNI GCATC 1 cut(s) 257
SfcI CTRYAG 1 cut(s) 385
Sse9I AATT 3 cut(s) 158, 205, 340
StyI CCWWGG 1 cut(s) 147
TasI AATT 3 cut(s) 158, 205, 340
TfiI GAWTC 1 cut(s) 121
TspDTI ATGAA 4 cut(s) 17, 89, 117, 206
Van91I CCANNNNNTGG 1 cut(s) 86
XapI RAATTY 1 cut(s) 205
XmnI GAANNNNTTC 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.