Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0006343

Physical Location & Seq

Genomic Coordinates Reverse (-)

3307654 .. 3309675

Gene Structure 2022 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G046300.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGAAAAGAAGTTATTGCTTTGTAATGGCTCTGCAAATCCTGTGTTGGGTTTCTGCAACAAGCAGGCCTTTTCCTCCAAATGATGGTGTTGGTGTTCATCAAGAAGGCCCAGGCCAGAACCCAGAGTCCTTACAAGTTACCTTACAAGAGGGTTTAAACACCATCAATGGAGTGACAAAAATGGCTGCAATAGCAAACTACAGAGGGATCGGCAAAATAGGATCAAGCCCTCCCAGCTGTGACCACAAGTGTTATGGATGTACTCCATGTGAAGCTATCCAGGTGCCTACCACCACCAAAAAGCACAGCCATTTGGGGGTTCAATATGCAAATTATGAGCCTGAGGGTTGGAAATGCAAGTGTGGCCCTACATTTTACAGCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009987 GO:0010016 GO:0010052 GO:0010103 GO:0010374 GO:0030154 GO:0032501 GO:0032502 GO:0048367 GO:0048731 GO:0048856 GO:0048869 GO:0090558 GO:0090626 GO:0090627 GO:0090698

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EPF

Protein Analysis

129

Amino Acids

13.91

Weight (kDa)

8.43

Isoelectric Point (pI)

62.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006343)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13898
fragaria_vesca	FvH4_1g07850 FvH4_6g33980
malus_domestica	MD09G1190400.v1.1
prunus_persica	Prupe.3G046300_v2.0.a1 Prupe.3G046300_v2.0.a1 Prupe.3G046300_v2.0.a1 Prupe.3G046300_v2.0.a1 Prupe.3G046300_v2.0.a1 Prupe.3G046300_v2.0.a1 Prupe.7G206500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0093721 RchiOBHm_Chr2g0143991
rosa_laevigata	RLG00000016432 RLG00000020066
rosa_multiflora	Rmu_sc0017976.1_g000002
rosa_roxburghii	Rroxscaffold_2G00147850
rosa_rugosa	Rorug02G0385100
rosa_samantha	Rh2AG085800 Rh2AG437800 Rh2BG086000 Rh2BG446300 Rh2CG088400 Rh2CG424400 Rh2DG084000 Rh2DG456500
rosa_wichuraiana	Rw2G035750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	283
AccB7I	CCANNNNNTGG	1 cut(s)	83
AclWI	GGATC	2 cut(s)	215, 229
AfaI	GTAC	1 cut(s)	262
AfiI	CCNNNNNNNGG	3 cut(s)	46, 83, 316
AgsI	TTSAA	1 cut(s)	323
AjnI	CCWGG	2 cut(s)	109, 279
AloI	GAACNNNNNNTCC	2 cut(s)	110, 142
AluBI	AGCT	2 cut(s)	237, 275
AluI	AGCT	2 cut(s)	237, 275
AlwI	GGATC	2 cut(s)	215, 229
AoxI	GGCC	4 cut(s)	65, 106, 112, 364
ApeKI	GCWGC	1 cut(s)	185
AspS9I	GGNCC	2 cut(s)	107, 365
AxyI	CCTNAGG	1 cut(s)	342
BanI	GGYRCC	1 cut(s)	283
BbvI	GCAGC	1 cut(s)	172
BccI	CCATC	2 cut(s)	77, 170
BciT130I	CCWGG	2 cut(s)	111, 281
BfmI	CTRYAG	1 cut(s)	199
BisI	GCNGC	1 cut(s)	186
BlsI	GCNGC	1 cut(s)	187
Bme1390I	CCNGG	2 cut(s)	111, 281
BmgT120I	GGNCC	2 cut(s)	107, 365
BmiI	GGNNCC	1 cut(s)	285
BmrFI	CCNGG	2 cut(s)	111, 281
BsaJI	CCNNGG	1 cut(s)	109
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 83, 316
Bse21I	CCTNAGG	1 cut(s)	342
BseBI	CCWGG	2 cut(s)	111, 281
BseDI	CCNNGG	1 cut(s)	109
BseGI	GGATG	1 cut(s)	263
BseLI	CCNNNNNNNGG	3 cut(s)	46, 83, 316
BseMII	CTCAG	1 cut(s)	333
BseXI	GCAGC	1 cut(s)	172
BseYI	CCCAGC	1 cut(s)	233
BshFI	GGCC	4 cut(s)	67, 108, 114, 366
BshNI	GGYRCC	1 cut(s)	283
BslI	CCNNNNNNNGG	3 cut(s)	46, 83, 316
BsnI	GGCC	4 cut(s)	67, 108, 114, 366
Bsp143I	GATC	2 cut(s)	207, 221
BspANI	GGCC	4 cut(s)	67, 108, 114, 366
BspCNI	CTCAG	1 cut(s)	334
BspLI	GGNNCC	1 cut(s)	285
BspPI	GGATC	2 cut(s)	215, 229
BspT107I	GGYRCC	1 cut(s)	283
BssECI	CCNNGG	1 cut(s)	109
BssMI	GATC	2 cut(s)	207, 221
Bst2UI	CCWGG	2 cut(s)	111, 281
BstC8I	GCNNGC	1 cut(s)	65
BstDEI	CTNAG	1 cut(s)	342
BstF5I	GGATG	1 cut(s)	263
BstKTI	GATC	2 cut(s)	210, 224
BstMBI	GATC	2 cut(s)	207, 221
BstMWI	GCNNNNNNNGC	3 cut(s)	191, 234, 363
BstNI	CCWGG	2 cut(s)	111, 281
BstSCI	CCNGG	2 cut(s)	109, 279
BstSFI	CTRYAG	1 cut(s)	199
BstV1I	GCAGC	1 cut(s)	172
Bsu36I	CCTNAGG	1 cut(s)	342
BsuRI	GGCC	4 cut(s)	67, 108, 114, 366
BtsCI	GGATG	1 cut(s)	263
Cac8I	GCNNGC	1 cut(s)	65
Cfr13I	GGNCC	2 cut(s)	107, 365
Csp6I	GTAC	1 cut(s)	261
CviAII	CATG	2 cut(s)	267, 384
CviQI	GTAC	1 cut(s)	261
DdeI	CTNAG	1 cut(s)	342
DpnI	GATC	2 cut(s)	209, 223
DpnII	GATC	2 cut(s)	207, 221
DraI	TTTAAA	1 cut(s)	156
Eco147I	AGGCCT	1 cut(s)	67
Eco81I	CCTNAGG	1 cut(s)	342
EcoRII	CCWGG	2 cut(s)	109, 279
FaeI	CATG	2 cut(s)	270, 387
FaiI	YATR	5 cut(s)	255, 268, 327, 336, 385
FalI	AAGNNNNNCTT	2 cut(s)	52, 84
FatI	CATG	2 cut(s)	266, 383
Fnu4HI	GCNGC	1 cut(s)	186
FokI	GGATG	1 cut(s)	270
Fsp4HI	GCNGC	1 cut(s)	186
GluI	GCNGC	1 cut(s)	186
GsaI	CCCAGC	1 cut(s)	237
HaeIII	GGCC	4 cut(s)	67, 108, 114, 366
Hin1II	CATG	2 cut(s)	270, 387
HinfI	GANTC	1 cut(s)	125
Hpy188III	TCNNGA	1 cut(s)	101
HpyAV	CCTTC	1 cut(s)	98
HpyCH4V	TGCA	5 cut(s)	34, 56, 188, 329, 357
HpyF10VI	GCNNNNNNNGC	3 cut(s)	191, 234, 363
HpyF3I	CTNAG	1 cut(s)	342
Hsp92II	CATG	2 cut(s)	270, 387
Kzo9I	GATC	2 cut(s)	207, 221
Lsp1109I	GCAGC	1 cut(s)	172
MaeIII	GTNAC	3 cut(s)	136, 172, 239
MalI	GATC	2 cut(s)	209, 223
MboI	GATC	2 cut(s)	207, 221
MluCI	AATT	1 cut(s)	331
MlyI	GAGTC	1 cut(s)	134
MmeI	TCCRAC	1 cut(s)	329
MnlI	CCTC	5 cut(s)	84, 142, 197, 240, 337
MseI	TTAA	1 cut(s)	155
MspA1I	CMGCKG	1 cut(s)	237
MspR9I	CCNGG	2 cut(s)	111, 281
MssI	GTTTAAAC	1 cut(s)	156
MvaI	CCWGG	2 cut(s)	111, 281
MwoI	GCNNNNNNNGC	3 cut(s)	191, 234, 363
NdeII	GATC	2 cut(s)	207, 221
NlaIII	CATG	2 cut(s)	270, 387
NlaIV	GGNNCC	1 cut(s)	285
NmuCI	GTSAC	2 cut(s)	172, 239
PceI	AGGCCT	1 cut(s)	67
PflMI	CCANNNNNTGG	1 cut(s)	83
PkrI	GCNGC	1 cut(s)	187
PleI	GAGTC	1 cut(s)	133
PmeI	GTTTAAAC	1 cut(s)	156
PpsI	GAGTC	1 cut(s)	133
Psp6I	CCWGG	2 cut(s)	109, 279
PspFI	CCCAGC	1 cut(s)	233
PspGI	CCWGG	2 cut(s)	109, 279
PspN4I	GGNNCC	1 cut(s)	285
PspPI	GGNCC	2 cut(s)	107, 365
PvuII	CAGCTG	1 cut(s)	237
RsaI	GTAC	1 cut(s)	262
RsaNI	GTAC	1 cut(s)	261
SaqAI	TTAA	1 cut(s)	155
SatI	GCNGC	1 cut(s)	186
Sau3AI	GATC	2 cut(s)	207, 221
Sau96I	GGNCC	2 cut(s)	107, 365
SchI	GAGTC	1 cut(s)	134
ScrFI	CCNGG	2 cut(s)	111, 281
SetI	ASST	4 cut(s)	143, 239, 277, 285
SfcI	CTRYAG	1 cut(s)	199
Sse9I	AATT	1 cut(s)	331
SseBI	AGGCCT	1 cut(s)	67
StuI	AGGCCT	1 cut(s)	67
StyD4I	CCNGG	2 cut(s)	109, 279
TasI	AATT	1 cut(s)	331
TatI	WGTACW	1 cut(s)	260
Tru1I	TTAA	1 cut(s)	155
Tru9I	TTAA	1 cut(s)	155
TseFI	GTSAC	2 cut(s)	172, 239
TseI	GCWGC	1 cut(s)	185
Tsp45I	GTSAC	2 cut(s)	172, 239
TspDTI	ATGAA	2 cut(s)	17, 86
Van91I	CCANNNNNTGG	1 cut(s)	83
XcmI	CCANNNNNNNNNTGG	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.