Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0006343

Physical Location & Seq

Genomic Coordinates Forward (+)

6706189 .. 6707376

Gene Structure 1188 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG086000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGAAGACCTCAAGGATATCCAGCTTCATTCTAGTGGTTTCTCTTCTCTGTTGGGTTTCTGTAACAATTAGCAAGCCTTTTCCTCGTCAACCAGACCAAACCCCCCATACCAAAGGAGCTACATTTGGCTCAAAACAGGGAGTTGATCAGAAAAGCTTTGACGGAGTGAAGGAGAAGTATGAAGGGGAGGAGTACTATAGAGGGCTTATGAGTAGGCTCGGGTCAATCCCACCAAACTGTGCTCACAGATGTGAAGGTTGTGTCCCTTGTGTTCCAGTTCAGATACCCACGACCACTGACCACATTGGAGTTCAATATGCCAATTATGAGCCTGAAGGATGGAAATGCAAGTGTGGTTCTACTTTCTTTAATCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009987 GO:0010016 GO:0010052 GO:0010103 GO:0010374 GO:0030154 GO:0032501 GO:0032502 GO:0048367 GO:0048731 GO:0048856 GO:0048869 GO:0090558 GO:0090626 GO:0090627 GO:0090698

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EPF

Protein Analysis

125

Amino Acids

13.91

Weight (kDa)

8.48

Isoelectric Point (pI)

37.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EPF	PF17181	72 - 125	4.9e-20	Epidermal patterning factor proteins

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006343)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13898
fragaria_vesca	FvH4_1g07850 FvH4_6g33980
malus_domestica	MD09G1190400.v1.1
prunus_persica	Prupe.3G046300_v2.0.a1 Prupe.3G046300_v2.0.a1 Prupe.3G046300_v2.0.a1 Prupe.3G046300_v2.0.a1 Prupe.3G046300_v2.0.a1 Prupe.3G046300_v2.0.a1 Prupe.7G206500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0093721 RchiOBHm_Chr2g0143991
rosa_laevigata	RLG00000016432 RLG00000020066
rosa_multiflora	Rmu_sc0017976.1_g000002
rosa_roxburghii	Rroxscaffold_2G00147850
rosa_rugosa	Rorug02G0385100
rosa_samantha	Rh2AG085800 Rh2AG437800 Rh2BG086000 Rh2BG446300 Rh2CG088400 Rh2CG424400 Rh2DG084000 Rh2DG456500
rosa_wichuraiana	Rw2G035750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	354
AfaI	GTAC	1 cut(s)	194
AgsI	TTSAA	1 cut(s)	314
AleI	CACNNNNGTG	1 cut(s)	249
AluBI	AGCT	3 cut(s)	24, 119, 156
AluI	AGCT	3 cut(s)	24, 119, 156
Alw21I	GWGCWC	1 cut(s)	244
Ama87I	CYCGRG	1 cut(s)	218
AvaI	CYCGRG	1 cut(s)	218
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	244
BccI	CCATC	1 cut(s)	333
BclI	TGATCA	1 cut(s)	145
BfaI	CTAG	1 cut(s)	32
BfmI	CTRYAG	1 cut(s)	196
BmcAI	AGTACT	1 cut(s)	194
BmeT110I	CYCGRG	1 cut(s)	218
BpiI	GAAGAC	1 cut(s)	11
Bse1I	ACTGG	1 cut(s)	275
BseGI	GGATG	1 cut(s)	344
BseNI	ACTGG	1 cut(s)	275
BseRI	GAGGAG	1 cut(s)	203
BsiHKAI	GWGCWC	1 cut(s)	244
BsiHKCI	CYCGRG	1 cut(s)	218
BslFI	GGGAC	1 cut(s)	248
BsmFI	GGGAC	1 cut(s)	248
BsoBI	CYCGRG	1 cut(s)	218
Bsp1286I	GDGCHC	1 cut(s)	244
Bsp143I	GATC	1 cut(s)	145
BsrI	ACTGG	1 cut(s)	275
BssMI	GATC	1 cut(s)	145
Bst4CI	ACNGT	1 cut(s)	239
Bst6I	CTCTTC	1 cut(s)	48
BstC8I	GCNNGC	1 cut(s)	74
BstF5I	GGATG	1 cut(s)	344
BstKTI	GATC	1 cut(s)	148
BstMBI	GATC	1 cut(s)	145
BstSFI	CTRYAG	1 cut(s)	196
BstV2I	GAAGAC	1 cut(s)	11
BtsCI	GGATG	1 cut(s)	344
BtsIMutI	CAGTG	1 cut(s)	294
Cac8I	GCNNGC	1 cut(s)	74
Csp6I	GTAC	1 cut(s)	193
CviJI	RGCY	8 cut(s)	24, 76, 119, 129, 156, 205, 217, 331
CviKI_1	RGCY	8 cut(s)	24, 76, 119, 129, 156, 205, 217, 331
CviQI	GTAC	1 cut(s)	193
DpnI	GATC	1 cut(s)	147
DpnII	GATC	1 cut(s)	145
Eam1104I	CTCTTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	48
Eco32I	GATATC	1 cut(s)	18
Eco57I	CTGAAG	1 cut(s)	354
Eco88I	CYCGRG	1 cut(s)	218
EcoRV	GATATC	1 cut(s)	18
FaiI	YATR	7 cut(s)	108, 180, 198, 209, 318, 327, 376
FaqI	GGGAC	1 cut(s)	248
FbaI	TGATCA	1 cut(s)	145
FokI	GGATG	1 cut(s)	351
FspBI	CTAG	1 cut(s)	32
HincII	GTYRAC	1 cut(s)	89
HindII	GTYRAC	1 cut(s)	89
HindIII	AAGCTT	1 cut(s)	154
Hpy166II	GTNNAC	1 cut(s)	89
Hpy188I	TCNGA	2 cut(s)	150, 282
Hpy8I	GTNNAC	1 cut(s)	89
HpyAV	CCTTC	4 cut(s)	163, 176, 248, 329
HpyCH4III	ACNGT	1 cut(s)	239
HpyCH4V	TGCA	1 cut(s)	348
Ksp22I	TGATCA	1 cut(s)	145
Kzo9I	GATC	1 cut(s)	145
LmnI	GCTCC	1 cut(s)	116
LpnPI	CCDG	5 cut(s)	34, 105, 122, 288, 345
MaeI	CTAG	1 cut(s)	32
MaeIII	GTNAC	1 cut(s)	61
MalI	GATC	1 cut(s)	147
MboI	GATC	1 cut(s)	145
MboII	GAAGA	2 cut(s)	16, 35
MhlI	GDGCHC	1 cut(s)	244
MluCI	AATT	2 cut(s)	66, 322
MnlI	CCTC	4 cut(s)	19, 93, 181, 194
MseI	TTAA	1 cut(s)	369
MslI	CAYNNNNRTG	2 cut(s)	32, 249
NdeII	GATC	1 cut(s)	145
OliI	CACNNNNGTG	1 cut(s)	249
RsaI	GTAC	1 cut(s)	194
RsaNI	GTAC	1 cut(s)	193
RseI	CAYNNNNRTG	2 cut(s)	32, 249
SaqAI	TTAA	1 cut(s)	369
Sau3AI	GATC	1 cut(s)	145
ScaI	AGTACT	1 cut(s)	194
SduI	GDGCHC	1 cut(s)	244
SetI	ASST	5 cut(s)	11, 26, 121, 158, 259
SfcI	CTRYAG	1 cut(s)	196
SmiMI	CAYNNNNRTG	2 cut(s)	32, 249
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
Sse9I	AATT	2 cut(s)	66, 322
SspMI	CTAG	1 cut(s)	32
TaaI	ACNGT	1 cut(s)	239
TasI	AATT	2 cut(s)	66, 322
TatI	WGTACW	1 cut(s)	192
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TscAI	CASTG	1 cut(s)	301
TspDTI	ATGAA	3 cut(s)	16, 17, 195
TspGWI	ACGGA	1 cut(s)	177
TspRI	CASTG	1 cut(s)	301
XspI	CTAG	1 cut(s)	32
ZrmI	AGTACT	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.