Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006343

Physical Location & Seq

Genomic Coordinates Reverse (-)

85533611 .. 85534215

Gene Structure 605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00147850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 171 bp

ATGAGTAGGCTTGGGTCAATCCCACCAAACTGTGCTCACAGATGTGAAGGTTGTGTCCCTTGTGTTCCAGTTCAGATACCCACGACCACTGACCACATTGGAGTTCAATATGCCAATTATGAGCCTGAAGGATGGAAATGCAAGTGTGGTTCTACTTTCTTTAATCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EPF

Protein Analysis

56

Amino Acids

6.14

Weight (kDa)

6.68

Isoelectric Point (pI)

47.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EPF	PF17181	3 - 56	4.4e-21	Epidermal patterning factor proteins

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006343)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13898
fragaria_vesca	FvH4_1g07850 FvH4_6g33980
malus_domestica	MD09G1190400.v1.1
prunus_persica	Prupe.3G046300_v2.0.a1 Prupe.3G046300_v2.0.a1 Prupe.3G046300_v2.0.a1 Prupe.3G046300_v2.0.a1 Prupe.3G046300_v2.0.a1 Prupe.3G046300_v2.0.a1 Prupe.7G206500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0093721 RchiOBHm_Chr2g0143991
rosa_laevigata	RLG00000016432 RLG00000020066
rosa_multiflora	Rmu_sc0017976.1_g000002
rosa_roxburghii	Rroxscaffold_2G00147850
rosa_rugosa	Rorug02G0385100
rosa_samantha	Rh2AG085800 Rh2AG437800 Rh2BG086000 Rh2BG446300 Rh2CG088400 Rh2CG424400 Rh2DG084000 Rh2DG456500
rosa_wichuraiana	Rw2G035750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	147
AgsI	TTSAA	1 cut(s)	107
AleI	CACNNNNGTG	1 cut(s)	42
Alw21I	GWGCWC	1 cut(s)	37
Bbv12I	GWGCWC	1 cut(s)	37
BccI	CCATC	1 cut(s)	126
Bse1I	ACTGG	1 cut(s)	68
BseGI	GGATG	1 cut(s)	137
BseNI	ACTGG	1 cut(s)	68
BsiHKAI	GWGCWC	1 cut(s)	37
BslFI	GGGAC	1 cut(s)	41
BsmFI	GGGAC	1 cut(s)	41
Bsp1286I	GDGCHC	1 cut(s)	37
BsrI	ACTGG	1 cut(s)	68
Bst4CI	ACNGT	1 cut(s)	32
BstF5I	GGATG	1 cut(s)	137
BtsCI	GGATG	1 cut(s)	137
BtsIMutI	CAGTG	1 cut(s)	87
CviJI	RGCY	2 cut(s)	10, 124
CviKI_1	RGCY	2 cut(s)	10, 124
Eco57I	CTGAAG	1 cut(s)	147
FaiI	YATR	3 cut(s)	111, 120, 169
FaqI	GGGAC	1 cut(s)	41
FokI	GGATG	1 cut(s)	144
Hpy188I	TCNGA	1 cut(s)	75
HpyAV	CCTTC	2 cut(s)	41, 122
HpyCH4III	ACNGT	1 cut(s)	32
HpyCH4V	TGCA	1 cut(s)	141
LpnPI	CCDG	2 cut(s)	81, 138
MhlI	GDGCHC	1 cut(s)	37
MluCI	AATT	1 cut(s)	115
MseI	TTAA	1 cut(s)	162
MslI	CAYNNNNRTG	1 cut(s)	42
OliI	CACNNNNGTG	1 cut(s)	42
RseI	CAYNNNNRTG	1 cut(s)	42
SaqAI	TTAA	1 cut(s)	162
SduI	GDGCHC	1 cut(s)	37
SetI	ASST	1 cut(s)	52
SgeI	CNNG	6 cut(s)	23, 72, 80, 94, 137, 154
SmiMI	CAYNNNNRTG	1 cut(s)	42
Sse9I	AATT	1 cut(s)	115
TaaI	ACNGT	1 cut(s)	32
TasI	AATT	1 cut(s)	115
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TscAI	CASTG	1 cut(s)	94
TspRI	CASTG	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.