FvH4_1g07850

Epidermal patterning factor proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0006343
Physical Location & Seq
Forward (+)
4159038 .. 4160360
1323 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g07850.t1

Sequence Viewer

Length: 381 bp
ATGAAGAGCTCAAGGATATCCAGCTTCATTCTAGCTGTCTGTCTTCTCAGTTGGGTTTCTCTAACAATTAGCAAGCCTTTTCCTCATCAACCAGACCAATCCCCTCATCCCAAAGGAGCCACCTTTGGCTCAAAACAGGGAGTTGATGATCAGAAAAGCTTGGAAGGAGGGAAGGAGAACTATGAAGGGGAGGAGTATTATAGAGGGCTTATGACAAGGCTTGGGTCAATCCCACCAAACTGTGCTCACAGTTGTAAAAGGTGTGTCCCTTGTGTTCCAGTTCAGATGCCCACAACCAATGACCACATTGAAGTTCAATACGCCAATTATGAGCCTGAAGGATGGAAATGCAAGTGTGGCTCTACTTTCTTCAATCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EPF

Protein Analysis

127

Amino Acids

14.03

Weight (kDa)

7.58

Isoelectric Point (pI)

50.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EPF PF17181 73 - 126 2.2e-18 Epidermal patterning factor proteins
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 357
AgsI TTSAA 3 cut(s) 311, 317, 373
AluBI AGCT 4 cut(s) 9, 24, 35, 159
AluI AGCT 4 cut(s) 9, 24, 35, 159
Alw21I GWGCWC 2 cut(s) 11, 247
BanII GRGCYC 1 cut(s) 11
BbsI GAAGAC 1 cut(s) 35
Bbv12I GWGCWC 2 cut(s) 11, 247
BccI CCATC 1 cut(s) 336
BclI TGATCA 1 cut(s) 148
BfaI CTAG 1 cut(s) 32
BmiI GGNNCC 1 cut(s) 118
BmsI GCATC 1 cut(s) 276
BpiI GAAGAC 1 cut(s) 35
Bse1I ACTGG 1 cut(s) 278
BseGI GGATG 2 cut(s) 106, 347
BseMII CTCAG 1 cut(s) 61
BseNI ACTGG 1 cut(s) 278
BseRI GAGGAG 1 cut(s) 206
BsiHKAI GWGCWC 2 cut(s) 11, 247
BslFI GGGAC 1 cut(s) 251
BsmFI GGGAC 1 cut(s) 251
Bsp1286I GDGCHC 2 cut(s) 11, 247
Bsp143I GATC 1 cut(s) 148
BspCNI CTCAG 1 cut(s) 60
BspLI GGNNCC 1 cut(s) 118
BsrI ACTGG 1 cut(s) 278
BssMI GATC 1 cut(s) 148
Bst4CI ACNGT 2 cut(s) 242, 251
BstC8I GCNNGC 1 cut(s) 74
BstDEI CTNAG 1 cut(s) 47
BstF5I GGATG 2 cut(s) 106, 347
BstKTI GATC 1 cut(s) 151
BstMBI GATC 1 cut(s) 148
BstMWI GCNNNNNNNGC 1 cut(s) 357
BstV2I GAAGAC 1 cut(s) 35
BtsCI GGATG 2 cut(s) 106, 347
Cac8I GCNNGC 1 cut(s) 74
DdeI CTNAG 1 cut(s) 47
DpnI GATC 1 cut(s) 150
DpnII GATC 1 cut(s) 148
Ecl136II GAGCTC 1 cut(s) 9
Eco24I GRGCYC 1 cut(s) 11
Eco32I GATATC 1 cut(s) 18
Eco53kI GAGCTC 1 cut(s) 9
Eco57I CTGAAG 1 cut(s) 357
EcoICRI GAGCTC 1 cut(s) 9
EcoRV GATATC 1 cut(s) 18
EcoT38I GRGCYC 1 cut(s) 11
FaiI YATR 5 cut(s) 183, 201, 212, 330, 379
FaqI GGGAC 1 cut(s) 251
FbaI TGATCA 1 cut(s) 148
FokI GGATG 2 cut(s) 93, 354
FriOI GRGCYC 1 cut(s) 11
FspBI CTAG 1 cut(s) 32
HindIII AAGCTT 1 cut(s) 157
Hpy188I TCNGA 2 cut(s) 153, 285
HpyAV CCTTC 4 cut(s) 158, 166, 179, 332
HpyCH4III ACNGT 2 cut(s) 242, 251
HpyCH4V TGCA 1 cut(s) 351
HpyF10VI GCNNNNNNNGC 1 cut(s) 357
HpyF3I CTNAG 1 cut(s) 47
Ksp22I TGATCA 1 cut(s) 148
Kzo9I GATC 1 cut(s) 148
LmnI GCTCC 1 cut(s) 116
LpnPI CCDG 5 cut(s) 34, 105, 122, 291, 348
LweI GCATC 1 cut(s) 276
MaeI CTAG 1 cut(s) 32
MalI GATC 1 cut(s) 150
MboI GATC 1 cut(s) 148
MboII GAAGA 3 cut(s) 16, 35, 361
MhlI GDGCHC 2 cut(s) 11, 247
MluCI AATT 2 cut(s) 66, 325
MnlI CCTC 5 cut(s) 93, 114, 161, 184, 197
MwoI GCNNNNNNNGC 1 cut(s) 357
NdeII GATC 1 cut(s) 148
NlaIV GGNNCC 1 cut(s) 118
Psp124BI GAGCTC 1 cut(s) 11
PspN4I GGNNCC 1 cut(s) 118
SacI GAGCTC 1 cut(s) 11
Sau3AI GATC 1 cut(s) 148
SduI GDGCHC 2 cut(s) 11, 247
SetI ASST 6 cut(s) 11, 26, 37, 125, 161, 263
SfaNI GCATC 1 cut(s) 276
SmlI CTYRAG 1 cut(s) 10
SmoI CTYRAG 1 cut(s) 10
Sse9I AATT 2 cut(s) 66, 325
SspMI CTAG 1 cut(s) 32
SstI GAGCTC 1 cut(s) 11
TaaI ACNGT 2 cut(s) 242, 251
TasI AATT 2 cut(s) 66, 325
TspDTI ATGAA 3 cut(s) 16, 17, 198
XspI CTAG 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.