Prupe.7G206500_v2.0.a1

Epidermal patterning factor proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0006343
Physical Location & Seq
Reverse (-)
19035273 .. 19036799
1527 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G206500.1

Sequence Viewer

Length: 480 bp
ATGTTCTTCTTTCATTGCAATTTGTCCCCCACAATAAAAGTTCATCTCCATCATCATCATCATCATCATCATCATTGCCATTTGGACTCCAACAAAATGAAGAAAAGGGCATGCCTTATTCTAGTGGCCAGTCTTCTGAGTTGGGTTTGTGTAACAAGCAGACCTTTTACATCCTCTGACTTCGCTCATCAACAAGCTGATCAAGACCAAAACCCACATCCCCAAGAGGCAACCTTTGACCCAAGACAGGGAGTTGAAGGCATTGAAGGACTTCCAGGAGATGATGAAAATGAAGGGAAGTATAGAGGGCTGAGCAGGCTTGGCTCAAGACCACCAAATTGTGAGCACAAATGTCAAGGCTGTGTACCATGTTTTCCAGTTCAGATACCCACAACCACAGACCAAATTGGACTTCAATATGCAAATTATGAGCCTGAAGGATGGAAATGCAAGTGTGGCTCTACTTTCTTCAACCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EPF

Protein Analysis

160

Amino Acids

18.05

Weight (kDa)

6.71

Isoelectric Point (pI)

49.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 126
AcuI CTGAAG 1 cut(s) 456
AfaI GTAC 1 cut(s) 366
AfiI CCNNNNNNNGG 2 cut(s) 247, 248
AgsI TTSAA 4 cut(s) 257, 266, 416, 472
AjnI CCWGG 1 cut(s) 274
AjuI GAANNNNNNNTTGG 2 cut(s) 396, 428
AluBI AGCT 1 cut(s) 197
AluI AGCT 1 cut(s) 197
Alw21I GWGCWC 1 cut(s) 348
AoxI GGCC 1 cut(s) 126
Asp700I GAANNNNTTC 1 cut(s) 270
BalI TGGCCA 1 cut(s) 128
BbsI GAAGAC 1 cut(s) 125
Bbv12I GWGCWC 1 cut(s) 348
BccI CCATC 2 cut(s) 57, 435
BciT130I CCWGG 1 cut(s) 276
BclI TGATCA 1 cut(s) 199
BfaI CTAG 1 cut(s) 122
BlpI GCTNAGC 1 cut(s) 311
Bme1390I CCNGG 1 cut(s) 276
BmrFI CCNGG 1 cut(s) 276
BpiI GAAGAC 1 cut(s) 125
Bpu1102I GCTNAGC 1 cut(s) 311
BpuEI CTTGAG 1 cut(s) 310
Bsc4I CCNNNNNNNGG 2 cut(s) 247, 248
Bse1I ACTGG 2 cut(s) 129, 377
Bse3DI GCAATG 2 cut(s) 13, 73
BseBI CCWGG 1 cut(s) 276
BseGI GGATG 3 cut(s) 170, 217, 446
BseLI CCNNNNNNNGG 2 cut(s) 247, 248
BseMI GCAATG 2 cut(s) 13, 73
BseMII CTCAG 2 cut(s) 128, 302
BseNI ACTGG 2 cut(s) 129, 377
BshFI GGCC 1 cut(s) 128
BsiHKAI GWGCWC 1 cut(s) 348
BslFI GGGAC 1 cut(s) 10
BslI CCNNNNNNNGG 2 cut(s) 247, 248
BsmFI GGGAC 1 cut(s) 10
BsnI GGCC 1 cut(s) 128
Bsp1286I GDGCHC 1 cut(s) 348
Bsp143I GATC 1 cut(s) 199
Bsp1720I GCTNAGC 1 cut(s) 311
BspANI GGCC 1 cut(s) 128
BspCNI CTCAG 2 cut(s) 129, 303
BsrDI GCAATG 2 cut(s) 13, 73
BsrI ACTGG 2 cut(s) 129, 377
BssMI GATC 1 cut(s) 199
Bst2UI CCWGG 1 cut(s) 276
BstC8I GCNNGC 2 cut(s) 112, 317
BstDEI CTNAG 2 cut(s) 137, 311
BstF5I GGATG 3 cut(s) 170, 217, 446
BstKTI GATC 1 cut(s) 202
BstMBI GATC 1 cut(s) 199
BstMWI GCNNNNNNNGC 3 cut(s) 316, 321, 456
BstNI CCWGG 1 cut(s) 276
BstNSI RCATGY 1 cut(s) 114
BstSCI CCNGG 1 cut(s) 274
BstV2I GAAGAC 1 cut(s) 125
BsuRI GGCC 1 cut(s) 128
BtsCI GGATG 3 cut(s) 170, 217, 446
Cac8I GCNNGC 2 cut(s) 112, 317
Csp6I GTAC 1 cut(s) 365
CviAII CATG 2 cut(s) 111, 369
CviJI RGCY 8 cut(s) 128, 197, 310, 319, 324, 360, 433, 459
CviKI_1 RGCY 8 cut(s) 128, 197, 310, 319, 324, 360, 433, 459
CviQI GTAC 1 cut(s) 365
DdeI CTNAG 2 cut(s) 137, 311
DpnI GATC 1 cut(s) 201
DpnII GATC 1 cut(s) 199
EaeI YGGCCR 1 cut(s) 126
Eco57I CTGAAG 1 cut(s) 456
EcoRII CCWGG 1 cut(s) 274
FaeI CATG 2 cut(s) 114, 372
FaiI YATR 6 cut(s) 112, 303, 370, 420, 429, 478
FalI AAGNNNNNCTT 2 cut(s) 148, 180
FaqI GGGAC 1 cut(s) 10
FatI CATG 2 cut(s) 110, 368
FbaI TGATCA 1 cut(s) 199
FokI GGATG 3 cut(s) 157, 204, 453
FspBI CTAG 1 cut(s) 122
HaeIII GGCC 1 cut(s) 128
Hin1II CATG 2 cut(s) 114, 372
HinfI GANTC 1 cut(s) 86
Hpy166II GTNNAC 1 cut(s) 365
Hpy188I TCNGA 3 cut(s) 138, 178, 384
Hpy188III TCNNGA 2 cut(s) 203, 327
Hpy8I GTNNAC 1 cut(s) 365
HpyAV CCTTC 4 cut(s) 251, 260, 287, 431
HpyCH4V TGCA 3 cut(s) 18, 422, 450
HpyF10VI GCNNNNNNNGC 3 cut(s) 316, 321, 456
HpyF3I CTNAG 2 cut(s) 137, 311
Hsp92II CATG 2 cut(s) 114, 372
Ksp22I TGATCA 1 cut(s) 199
Kzo9I GATC 1 cut(s) 199
LpnPI CCDG 7 cut(s) 142, 233, 261, 288, 301, 390, 447
MaeI CTAG 1 cut(s) 122
MaeIII GTNAC 1 cut(s) 151
MalI GATC 1 cut(s) 201
MboI GATC 1 cut(s) 199
MboII GAAGA 3 cut(s) 112, 125, 460
MhlI GDGCHC 1 cut(s) 348
MlsI TGGCCA 1 cut(s) 128
MluCI AATT 4 cut(s) 19, 337, 405, 424
MluNI TGGCCA 1 cut(s) 128
MlyI GAGTC 1 cut(s) 80
MmeI TCCRAC 1 cut(s) 114
MnlI CCTC 3 cut(s) 184, 220, 299
Mox20I TGGCCA 1 cut(s) 128
MroXI GAANNNNTTC 1 cut(s) 270
MscI TGGCCA 1 cut(s) 128
Msp20I TGGCCA 1 cut(s) 128
MspR9I CCNGG 1 cut(s) 276
MvaI CCWGG 1 cut(s) 276
MwoI GCNNNNNNNGC 3 cut(s) 316, 321, 456
NdeII GATC 1 cut(s) 199
NlaIII CATG 2 cut(s) 114, 372
NspI RCATGY 1 cut(s) 114
PaeI GCATGC 1 cut(s) 114
PdmI GAANNNNTTC 1 cut(s) 270
PfoI TCCNGGA 1 cut(s) 274
PleI GAGTC 1 cut(s) 80
PpsI GAGTC 1 cut(s) 80
Psp6I CCWGG 1 cut(s) 274
PspGI CCWGG 1 cut(s) 274
RsaI GTAC 1 cut(s) 366
RsaNI GTAC 1 cut(s) 365
Sau3AI GATC 1 cut(s) 199
SchI GAGTC 1 cut(s) 80
ScrFI CCNGG 1 cut(s) 276
SduI GDGCHC 1 cut(s) 348
SetI ASST 3 cut(s) 166, 199, 236
SmlI CTYRAG 1 cut(s) 325
SmoI CTYRAG 1 cut(s) 325
SphI GCATGC 1 cut(s) 114
Sse9I AATT 4 cut(s) 19, 337, 405, 424
SspMI CTAG 1 cut(s) 122
StyD4I CCNGG 1 cut(s) 274
TasI AATT 4 cut(s) 19, 337, 405, 424
TspDTI ATGAA 4 cut(s) 32, 113, 300, 306
XceI RCATGY 1 cut(s) 114
XmnI GAANNNNTTC 1 cut(s) 270
XspI CTAG 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.