Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009267

Physical Location & Seq

Genomic Coordinates Forward (+)

4677699 .. 4685666

Gene Structure 7968 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G14120.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3306 bp

ATGGATATGGATATGGACACTTCCCCTAGCTACTTCGACCCCGAGGCCCTCAGTGTTAGGGATCAATTCCGTCGCTATCGAAAGAGACACTCTACATCGCCACATGAGGAAATGTTGAGTTCAAATGTCAGCGAGAACAGATTACTGTATGACGGGCATAACATTCATAGTCCAACAAATACTGCATTGCTCCTTGAAAACATTAAGGAAGAGGTTGACAACTTTCACACTGATCATTACGAAGGAACACCTACAAACCCGATATCTGCTTCCAGGAGGGAGAGTGTTGGAATTCTTAATGATGACGATGAGGCTTTGTTTCGTCGAGTAGAAAGTCAATCACTCAAGGCTTGCAAGATTGAGAATGATGAGTTAGCGGAGAGTGGAGATACAACCTTTGCTTTGTTTGCTTCCCTGTTTGATTCTGCGCTTCAAGGACTAATGTCCATTCCAAATCTAATGTTGAGGCTTGAAGAATCATGCAGGAATGTTTCACAATCAATTAGATATGGATCAGATATTAGACATCGTGCTGTGGAGGATAAACTTATGAGACAGAAGGCTCAGCTTTTGCTTGGTGAGGCTGCCTCCTGGTCACTTTTATGGAACCTATATGGAAAAGGTACTGATGAAGTTCCTGAGAATTTGATCCTGATCCCATCAACATCTCATTTGGAGGCTTGTCAGTTTGTTTTAAACGACCATACAGCTCAGCTATGCCTTCGGATAGTCATGTGGCTTGAAGAACTTGCTTCAAAATCACTTGACTTGGAAAGGAAGGTGCAGGGATCTCATGTGGGTACTTATCTTCCTAATGCTGGAGTGTGGCATCACACACAAAGATATCTCAAGAAAAATGGCTCTAACGCTGACACTTTACACCATCTGGATTTTGATGCTCCAACACGTGAACATGCTCGTCTTCTTCCTGATGACTATAAACAAGATGAATCTGTTCTTGAGGATGTATGGACTTTGATAAGGGCTGGGAGAATAGAAGAGGCATGTGATCTCTGCAGGTCTGCTGGGCAGTCATGGAGAGCTGCGACTTTATGCCCTTTTTCTGGAATGGACATGTTTCCTTCTATTGAGGCACTGGTAAAGAATGGGGAAAATAGGACTCTCCAGGCCATCGAGCAGGAAAGTGGCTTTGGCAATCAACTGCGTCTTTGGAAATGGGCTTCCTACTGTGCATCAGAGAAAATTGCAGAGCAGGACGGCGGCAAACATGAAGTTGCTGTTTTTGCAACTCAATGTAGCAACCTGAACCGCATGTTACCAATTTGTACTGATTGGGAGTCAGCTTGCTGGGCGATGGCAAAATCCTGGCTTGATGTTCAGGTTGATCTTGAACTCGCCCAATCAAAGCCTGGTTTGACAGAAAGGTTTAAAAGCTGCATTGATGAAAGCCCTGAAGCTACGCAAAATGGTTGTCAGGCTTCATTTGGGCCAGAAGATTGGCCCCTCCATGTTCTAAACCAACAACCCCGCGACCTTCCTGCTCTTCTTCAGAAACTTCATTCAGGGGAAATGGTGCACGAAGCTGTTGTCAGAGGATGCAAAGAGCAGCACCGCCAAATTCAGATGAACCTTATGTTGGGGGATATATCACATCTCCTTGATATCATATGGTCATGGATAGCGCCCTTAGAAGATGATCAAAGCAACTTCAGGCCCCATGGAGATCCTCATATGATAAAGTTCGGTGCACACATGGTACTTGTTCTTAGGCTTCTATTTACTGATGAAATCAACGACTCTTTCAAGGAGAAGCTCAATAATGTTGGTGATCTTATTCTTCATATGTATGCGATGTTTCTATTTTCAAAACAACATGAAGAATTGGTAGGAATTTATGCTTCTCAGCTTGCTCGCCATCGATGCATTGAACTTTTTGTACACATGATGGAGTTAAGGATGCATAGCAGCGTACATGTGAAGTACAAAATCTTCCTGTCCGCTATGGAGTACTTGTCATTCTCTCCTGTGGATGATTTACATGGAAATTTTGAAGAAATAGTTGACAGGGTTTTGTCAAGATCTCGGGAAATCAAACTTGCAAAATATGATCCCTCAATTGATGTTGCGGAGCAGCATCGTCAGCAGAGTCTTCAAAAAGCAATAGCCATTCAGTGGCTCTGTTTTACACCTCCATCTACTATAAAGGATGTGAAGGATGTTACTTCCAAATTACTTTTGCGATCTTTGATGCACAGCAACATACTTTTCAGAGAGTTTGCATTGATTGCCATGTGGAGGGTGCCTGCAACTCCTGTGGGTGCACACACACTTCTTAGTTATCTTGCTGAACCTCTGAAGCAACTCTCAGAAAATCCAGATACCCTCGAGGATTATGTTTCCGAGAATTTGCAAGAGTTCCAAGACTGGAATGAGTATTATTCCTGTGATGCAAAATATCGCAACTGGCTCAAATTCCAGTTAGAGAATGCTGAAGTCACTGAACTGTCAGAAGAGGAAAATCAGAAAGCTGTTGTAGCAGCCAAAGAGACTCTGGATTCTTCTTTGTCATTGCTTCTCAGACAAGACAACCCCTGGATGACATTTCTCGAAGACCATGTATTCGAATCAGAAGAATATTTATTCCTTGAATTGCATGCAACTGCGATGCTCTGTTTGCCTTCTGGTGAATGTCTGCGCCCAGATGCCACTGTTTGTGCTGCACTAATGAGTGCACTTTACTCTTCTGTCAGTGAGGAAGTTGTTTTAGATCGCCAGTTAATGGTAAATGTATCGATTTCGTCAAGGGACAGCTACTGCATCGAGGTTGTGCTCCGGTGTTTAGCAATTAAGGGCGATGGACTTGGGCCACATAATGCAAATGACGGTGGTATTCTAAGCGCAGTGGCTGCAGCTGGTTTTAAAGGTTCGGATATCTATGGAACATATTTCTCATTCACCTATGATTTACCTCCTTTCTCCATAGAAATTTGGGGATGTGAGCTTACACGGTTCCAGGCAGGTGTTACAATGGATATATCCCGCCTAGACGCTTGGTATTCAAGCAAAGAAGGCTCGCTTGAAACACCTGCAACTTATATTGTCCGGGGTCTCTGTAGAAGATGCTGTCTTCCAGAACTCGTTCTTCGATCAATGCAGGTTTCTGTTTCTCTAATGGAGTCGGGAAATCCACCTGAAGATCATGATGAACTGATTGAGCTTGTTGCTTCTGATGAAACTGGTTTTCTCTCTTTGTTCAGTCGGCAACAATTACAGGAGTTCATGTTATTTGAGAGGGAGTATCGTATGTCCCAGTTGGAGCTTCAAGAGGAACTTTCATCACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000972 GO:0000973 GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006355 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0008104 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016043 GO:0017038 GO:0017056 GO:0019219 GO:0019222 GO:0022607 GO:0031080 GO:0031090 GO:0031323 GO:0031326 GO:0031503 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0034622 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0046931 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051276 GO:0051292 GO:0051641 GO:0051649 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup84_Nup100

Protein Analysis

1101

Amino Acids

125.33

Weight (kDa)

4.96

Isoelectric Point (pI)

52.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nup84_Nup100	PF04121	193 - 883	9.6e-62	Nuclear pore protein 84 / 107

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0009267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14120 AT3G14120 AT3G14120
fragaria_vesca	FvH4_6g35170 FvH4_6g35170
malus_domestica	MD09G1178100.v1.1 MD17G1148600.v1.1
prunus_persica	Prupe.3G037400_v2.0.a1 Prupe.3G037400_v2.0.a1
pyrus_communis	pycom09g09650 pycom17g14190
rosa_chinensis	RchiOBHm_Chr2g0146431
rosa_laevigata	RLG00000020200
rosa_multiflora	Rmu_sc0001986.1_g000003 Rmu_sc0030037.1_g000003
rosa_roxburghii	Rroxscaffold_2G00100100
rosa_rugosa	Rorug02G0394300
rosa_samantha	Rh2AG451100 Rh2BG463600 Rh2CG437900 Rh2DG472600
rosa_wichuraiana	Rw2G036820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	2969, 3055
AbsI	CCTCGAGG	1 cut(s)	2345
Acc36I	ACCTGC	4 cut(s)	1008, 2969, 3055, 3106
AccB1I	GGYRCC	1 cut(s)	2260
AccB7I	CCANNNNNTGG	2 cut(s)	2133, 2740
AccII	CGCG	1 cut(s)	1491
AciI	CCGC	8 cut(s)	377, 1221, 1270, 1489, 1573, 1959, 2087, 3001
AclWI	GGATC	7 cut(s)	69, 520, 643, 649, 796, 1679, 2063
AcsI	RAATTY	8 cut(s)	291, 643, 1578, 1851, 2005, 2365, 2432, 2946
AcuI	CTGAAG	6 cut(s)	1434, 1493, 1654, 2336, 2472, 3174
AcvI	CACGTG	1 cut(s)	908
AfaI	GTAC	8 cut(s)	625, 802, 1288, 1719, 1899, 1932, 1943, 1970
AfiI	CCNNNNNNNGG	6 cut(s)	818, 1064, 1597, 2133, 2256, 2740
AflIII	ACRYGT	3 cut(s)	905, 1074, 1933
AjnI	CCWGG	7 cut(s)	272, 590, 1125, 1325, 1369, 2552, 2973
AjuI	GAANNNNNNNTTGG	4 cut(s)	1134, 1166, 1580, 1612
Alw21I	GWGCWC	5 cut(s)	1539, 1711, 2284, 2695, 2793
Alw26I	GTCTC	4 cut(s)	79, 547, 2501, 3074
Alw44I	GTGCAC	4 cut(s)	1535, 1707, 2280, 2691
AlwI	GGATC	7 cut(s)	69, 520, 643, 649, 796, 1679, 2063
AlwNI	CAGNNNCTG	2 cut(s)	2775, 2867
Ama87I	CYCGRG	3 cut(s)	41, 2043, 2345
AoxI	GGCC	6 cut(s)	45, 1128, 1448, 1460, 1673, 2825
ApaLI	GTGCAC	4 cut(s)	1535, 1707, 2280, 2691
ApoI	RAATTY	8 cut(s)	291, 643, 1578, 1851, 2005, 2365, 2432, 2946
ArsI	GACNNNNNNTTYG	6 cut(s)	1417, 1449, 1533, 1565, 2564, 2596
Asp700I	GAANNNNTTC	2 cut(s)	954, 3099
AspLEI	GCGC	4 cut(s)	430, 1645, 2658, 2861
AspS9I	GGNCC	5 cut(s)	46, 1448, 1461, 1674, 2825
AsuC2I	CCSGG	1 cut(s)	3065
AsuHPI	GGTGA	5 cut(s)	590, 1799, 2657, 2908, 3291
AsuII	TTCGAA	1 cut(s)	2583
AvaI	CYCGRG	3 cut(s)	41, 2043, 2345
BaeGI	GKGCMC	4 cut(s)	1539, 1711, 2284, 2695
BanI	GGYRCC	1 cut(s)	2260
BarI	GAAGNNNNNNTAC	2 cut(s)	1934, 1966
BbrPI	CACGTG	1 cut(s)	908
BbsI	GAAGAC	4 cut(s)	914, 2102, 2577, 3080
Bbv12I	GWGCWC	5 cut(s)	1539, 1711, 2284, 2695, 2793
BccI	CCATC	8 cut(s)	667, 891, 1139, 1309, 1884, 1900, 2161, 2810
BceAI	ACGGC	1 cut(s)	1234
BcgI	CGANNNNNNTGC	2 cut(s)	1481, 1515
BciT130I	CCWGG	7 cut(s)	274, 592, 1127, 1327, 1371, 2554, 2975
BclI	TGATCA	2 cut(s)	232, 1657
BcnI	CCSGG	1 cut(s)	3065
BcoDI	GTCTC	4 cut(s)	79, 547, 2501, 3074
BfaI	CTAG	2 cut(s)	27, 3005
BfmI	CTRYAG	3 cut(s)	1015, 2868, 3073
BfoI	RGCGCY	1 cut(s)	1646
BfuAI	ACCTGC	4 cut(s)	1008, 2969, 3055, 3106
BglII	AGATCT	1 cut(s)	2039
BlpI	GCTNAGC	2 cut(s)	564, 711
BmcAI	AGTACT	1 cut(s)	1970
Bme1390I	CCNGG	8 cut(s)	274, 592, 1127, 1327, 1371, 2554, 2975, 3065
BmeT110I	CYCGRG	3 cut(s)	41, 2043, 2345
BmgT120I	GGNCC	5 cut(s)	46, 1448, 1461, 1674, 2825
BmiI	GGNNCC	5 cut(s)	608, 1463, 1676, 2262, 2972
BmrFI	CCNGG	8 cut(s)	274, 592, 1127, 1327, 1371, 2554, 2975, 3065
BmrI	ACTGGG	1 cut(s)	3265
BmuI	ACTGGG	1 cut(s)	3265
BoxI	GACNNNNGTC	1 cut(s)	442
BpiI	GAAGAC	4 cut(s)	914, 2102, 2577, 3080
BplI	GAGNNNNNCTC	2 cut(s)	572, 604
BpmI	CTGGAG	2 cut(s)	840, 1109
Bpu1102I	GCTNAGC	2 cut(s)	564, 711
Bpu14I	TTCGAA	1 cut(s)	2583
BpuEI	CTTGAG	3 cut(s)	329, 833, 980
BpuMI	CCSGG	1 cut(s)	3065
Bsa29I	ATCGAT	2 cut(s)	1879, 2753
BsaAI	YACGTR	1 cut(s)	908
BsaBI	GATNNNNATC	2 cut(s)	511, 653
BsaI	GGTCTC	1 cut(s)	3074
BsaJI	CCNNGG	4 cut(s)	42, 1678, 2552, 3064
BsaWI	WCCGGW	1 cut(s)	2793
BsaXI	ACNNNNNCTCC	6 cut(s)	268, 298, 1958, 1988, 3227, 3257
Bsc4I	CCNNNNNNNGG	6 cut(s)	818, 1064, 1597, 2133, 2256, 2740
Bse1I	ACTGG	7 cut(s)	1101, 2390, 2429, 2437, 2734, 3202, 3271
Bse3DI	GCAATG	2 cut(s)	185, 2528
Bse8I	GATNNNNATC	2 cut(s)	511, 653
BseBI	CCWGG	7 cut(s)	274, 592, 1127, 1327, 1371, 2554, 2975
BseCI	ATCGAT	2 cut(s)	1879, 2753
BseDI	CCNNGG	4 cut(s)	42, 1678, 2552, 3064
BseGI	GGATG	8 cut(s)	970, 1562, 1923, 1996, 2173, 2182, 2562, 2960
BseJI	GATNNNNATC	2 cut(s)	511, 653
BseLI	CCNNNNNNNGG	6 cut(s)	818, 1064, 1597, 2133, 2256, 2740
BseMI	GCAATG	2 cut(s)	185, 2528
BseMII	CTCAG	7 cut(s)	64, 578, 630, 725, 1877, 2340, 2551
BseNI	ACTGG	7 cut(s)	1101, 2390, 2429, 2437, 2734, 3202, 3271
BseSI	GKGCMC	4 cut(s)	1539, 1711, 2284, 2695
BseYI	CCCAGC	3 cut(s)	986, 1025, 1308
BsgI	GTGCAG	2 cut(s)	803, 2664
Bsh1236I	CGCG	1 cut(s)	1491
BshFI	GGCC	6 cut(s)	47, 1130, 1450, 1462, 1675, 2827
BshNI	GGYRCC	1 cut(s)	2260
BshVI	ATCGAT	2 cut(s)	1879, 2753
BsiHKAI	GWGCWC	5 cut(s)	1539, 1711, 2284, 2695, 2793
BsiHKCI	CYCGRG	3 cut(s)	41, 2043, 2345
BsiSI	CCGG	2 cut(s)	2794, 3064
BslFI	GGGAC	2 cut(s)	2780, 3253
BslI	CCNNNNNNNGG	6 cut(s)	818, 1064, 1597, 2133, 2256, 2740
BsmAI	GTCTC	4 cut(s)	79, 547, 2501, 3074
BsmFI	GGGAC	2 cut(s)	2780, 3253
BsmI	GAATGC	1 cut(s)	2452
BsnI	GGCC	6 cut(s)	47, 1130, 1450, 1462, 1675, 2827
Bso31I	GGTCTC	1 cut(s)	3074
BsoBI	CYCGRG	3 cut(s)	41, 2043, 2345
Bsp119I	TTCGAA	1 cut(s)	2583
Bsp1286I	GDGCHC	5 cut(s)	1539, 1711, 2284, 2695, 2793
Bsp1407I	TGTACA	1 cut(s)	1897
Bsp1720I	GCTNAGC	2 cut(s)	564, 711
Bsp19I	CCATGG	1 cut(s)	1678
BspACI	CCGC	8 cut(s)	377, 1221, 1270, 1489, 1573, 1959, 2087, 3001
BspANI	GGCC	6 cut(s)	47, 1130, 1450, 1462, 1675, 2827
BspCNI	CTCAG	7 cut(s)	63, 577, 631, 724, 1876, 2339, 2550
BspDI	ATCGAT	2 cut(s)	1879, 2753
BspFNI	CGCG	1 cut(s)	1491
BspHI	TCATGA	1 cut(s)	3160
BspLI	GGNNCC	5 cut(s)	608, 1463, 1676, 2262, 2972
BspMAI	CTGCAG	2 cut(s)	1019, 2872
BspMI	ACCTGC	4 cut(s)	1008, 2969, 3055, 3106
BspPI	GGATC	7 cut(s)	69, 520, 643, 649, 796, 1679, 2063
BspQI	GCTCTTC	1 cut(s)	1509
BspT104I	TTCGAA	1 cut(s)	2583
BspT107I	GGYRCC	1 cut(s)	2260
BspTNI	GGTCTC	1 cut(s)	3074
BsrDI	GCAATG	2 cut(s)	185, 2528
BsrGI	TGTACA	1 cut(s)	1897
BsrI	ACTGG	7 cut(s)	1101, 2390, 2429, 2437, 2734, 3202, 3271
BssECI	CCNNGG	4 cut(s)	42, 1678, 2552, 3064
BssT1I	CCWWGG	1 cut(s)	1678
Bst2UI	CCWGG	7 cut(s)	274, 592, 1127, 1327, 1371, 2554, 2975
Bst4CI	ACNGT	6 cut(s)	147, 1190, 2466, 2671, 2846, 2970
Bst6I	CTCTTC	5 cut(s)	204, 993, 1509, 2466, 2707
BstAPI	GCANNNNNTGC	2 cut(s)	2246, 2867
BstAUI	TGTACA	1 cut(s)	1897
BstBAI	YACGTR	1 cut(s)	908
BstBI	TTCGAA	1 cut(s)	2583
BstC8I	GCNNGC	7 cut(s)	352, 1306, 1869, 1873, 2265, 2616, 3035
BstDSI	CCRYGG	1 cut(s)	1678
BstF5I	GGATG	8 cut(s)	970, 1562, 1923, 1996, 2173, 2182, 2562, 2960
BstFNI	CGCG	1 cut(s)	1491
BstH2I	RGCGCY	1 cut(s)	1646
BstHHI	GCGC	4 cut(s)	430, 1645, 2658, 2861
BstMAI	GTCTC	4 cut(s)	79, 547, 2501, 3074
BstNI	CCWGG	7 cut(s)	274, 592, 1127, 1327, 1371, 2554, 2975
BstNSI	RCATGY	6 cut(s)	917, 1008, 1078, 1276, 1937, 2618
BstPAI	GACNNNNGTC	1 cut(s)	442
BstSCI	CCNGG	8 cut(s)	272, 590, 1125, 1325, 1369, 2552, 2973, 3063
BstSFI	CTRYAG	3 cut(s)	1015, 2868, 3073
BstSLI	GKGCMC	4 cut(s)	1539, 1711, 2284, 2695
BstUI	CGCG	1 cut(s)	1491
BstV2I	GAAGAC	4 cut(s)	914, 2102, 2577, 3080
BstX2I	RGATCY	3 cut(s)	788, 1684, 2039
BstXI	CCANNNNNNTGG	1 cut(s)	1458
BstYI	RGATCY	3 cut(s)	788, 1684, 2039
Bsu15I	ATCGAT	2 cut(s)	1879, 2753
BsuRI	GGCC	6 cut(s)	47, 1130, 1450, 1462, 1675, 2827
BsuTUI	ATCGAT	2 cut(s)	1879, 2753
BtgI	CCRYGG	1 cut(s)	1678
BtgZI	GCGATG	5 cut(s)	81, 1328, 1826, 2639, 2829
BtsCI	GGATG	8 cut(s)	970, 1562, 1923, 1996, 2173, 2182, 2562, 2960
BtsI	GCAGTG	1 cut(s)	2868
BtsIMutI	CAGTG	8 cut(s)	58, 228, 1094, 2138, 2457, 2667, 2716, 2868
BveI	ACCTGC	4 cut(s)	1008, 2969, 3055, 3106
Cac8I	GCNNGC	7 cut(s)	352, 1306, 1869, 1873, 2265, 2616, 3035
CaiI	CAGNNNCTG	2 cut(s)	2775, 2867
CciI	TCATGA	1 cut(s)	3160
CfoI	GCGC	4 cut(s)	430, 1645, 2658, 2861
Cfr13I	GGNCC	5 cut(s)	46, 1448, 1461, 1674, 2825
ClaI	ATCGAT	2 cut(s)	1879, 2753
CseI	GACGC	2 cut(s)	1154, 3017
Csp6I	GTAC	8 cut(s)	624, 801, 1287, 1718, 1898, 1931, 1942, 1969
CspCI	CAANNNNNGTGG	2 cut(s)	2256, 2291
CviQI	GTAC	8 cut(s)	624, 801, 1287, 1718, 1898, 1931, 1942, 1969
DraI	TTTAAA	3 cut(s)	696, 1390, 2881
Eam1104I	CTCTTC	5 cut(s)	204, 993, 1509, 2466, 2707
EarI	CTCTTC	5 cut(s)	204, 993, 1509, 2466, 2707
Eco130I	CCWWGG	1 cut(s)	1678
Eco31I	GGTCTC	1 cut(s)	3074
Eco32I	GATATC	4 cut(s)	264, 845, 1624, 2893
Eco57I	CTGAAG	6 cut(s)	1434, 1493, 1654, 2336, 2472, 3174
Eco72I	CACGTG	1 cut(s)	908
Eco88I	CYCGRG	3 cut(s)	41, 2043, 2345
EcoO109I	RGGNCCY	2 cut(s)	46, 1674
EcoRI	GAATTC	1 cut(s)	291
EcoRII	CCWGG	7 cut(s)	272, 590, 1125, 1325, 1369, 2552, 2973
EcoRV	GATATC	4 cut(s)	264, 845, 1624, 2893
EcoT14I	CCWWGG	1 cut(s)	1678
EcoT22I	ATGCAT	2 cut(s)	1886, 1923
ErhI	CCWWGG	1 cut(s)	1678
FalI	AAGNNNNNCTT	3 cut(s)	3021, 3053, 3276
FaqI	GGGAC	2 cut(s)	2780, 3253
FauI	CCCGC	2 cut(s)	1496, 3008
FauNDI	CATATG	3 cut(s)	1628, 1692, 1803
FbaI	TGATCA	2 cut(s)	232, 1657
FokI	GGATG	8 cut(s)	977, 1569, 1930, 2003, 2180, 2189, 2569, 2967
FspBI	CTAG	2 cut(s)	27, 3005
GlaI	GCGC	4 cut(s)	429, 1644, 2657, 2860
GsaI	CCCAGC	3 cut(s)	990, 1029, 1312
GsuI	CTGGAG	2 cut(s)	840, 1109
HaeII	RGCGCY	1 cut(s)	1646
HaeIII	GGCC	6 cut(s)	47, 1130, 1450, 1462, 1675, 2827
HapII	CCGG	2 cut(s)	2794, 3064
HgaI	GACGC	2 cut(s)	1154, 3017
HhaI	GCGC	4 cut(s)	430, 1645, 2658, 2861
Hin6I	GCGC	4 cut(s)	428, 1643, 2656, 2859
HinP1I	GCGC	4 cut(s)	428, 1643, 2656, 2859
HincII	GTYRAC	2 cut(s)	217, 2023
HindII	GTYRAC	2 cut(s)	217, 2023
HpaII	CCGG	2 cut(s)	2794, 3064
HphI	GGTGA	5 cut(s)	590, 1799, 2657, 2908, 3291
Hpy166II	GTNNAC	8 cut(s)	217, 911, 1537, 1709, 1900, 2023, 2282, 2693
Hpy8I	GTNNAC	8 cut(s)	217, 911, 1537, 1709, 1900, 2023, 2282, 2693
Hpy99I	CGWCG	2 cut(s)	75, 327
HpyAV	CCTTC	9 cut(s)	236, 553, 731, 772, 1092, 1505, 2167, 2649, 3023
HpyCH4III	ACNGT	6 cut(s)	147, 1190, 2466, 2671, 2846, 2970
HpyCH4IV	ACGT	1 cut(s)	907
HpySE526I	ACGT	1 cut(s)	907
HspAI	GCGC	4 cut(s)	428, 1643, 2656, 2859
Ksp22I	TGATCA	2 cut(s)	232, 1657
LguI	GCTCTTC	1 cut(s)	1509
LmnI	GCTCC	5 cut(s)	195, 904, 2089, 2796, 3277
MaeI	CTAG	2 cut(s)	27, 3005
MaeII	ACGT	1 cut(s)	907
MaeIII	GTNAC	5 cut(s)	594, 1275, 2179, 2455, 2983
MfeI	CAATTG	1 cut(s)	2076
MflI	RGATCY	3 cut(s)	788, 1684, 2039
MhlI	GDGCHC	5 cut(s)	1539, 1711, 2284, 2695, 2793
MlyI	GAGTC	6 cut(s)	1114, 1307, 1751, 2116, 2503, 3146
MmeI	TCCRAC	4 cut(s)	197, 268, 926, 3255
Mph1103I	ATGCAT	2 cut(s)	1886, 1923
MroXI	GAANNNNTTC	2 cut(s)	954, 3099
MseI	TTAA	8 cut(s)	204, 297, 695, 1389, 1913, 2738, 2808, 2880
MslI	CAYNNNNRTG	2 cut(s)	601, 1806
MspA1I	CMGCKG	1 cut(s)	2873
MspI	CCGG	2 cut(s)	2794, 3064
MspR9I	CCNGG	8 cut(s)	274, 592, 1127, 1327, 1371, 2554, 2975, 3065
MunI	CAATTG	1 cut(s)	2076
Mva1269I	GAATGC	1 cut(s)	2452
MvaI	CCWGG	7 cut(s)	274, 592, 1127, 1327, 1371, 2554, 2975
MvnI	CGCG	1 cut(s)	1491
NciI	CCSGG	1 cut(s)	3065
NcoI	CCATGG	1 cut(s)	1678
NdeI	CATATG	3 cut(s)	1628, 1692, 1803
NlaIV	GGNNCC	5 cut(s)	608, 1463, 1676, 2262, 2972
NmuCI	GTSAC	2 cut(s)	594, 2455
NsiI	ATGCAT	2 cut(s)	1886, 1923
NspI	RCATGY	6 cut(s)	917, 1008, 1078, 1276, 1937, 2618
NspV	TTCGAA	1 cut(s)	2583
PaeI	GCATGC	1 cut(s)	2618
PaeR7I	CTCGAG	1 cut(s)	2345
PagI	TCATGA	1 cut(s)	3160
PaqCI	CACCTGC	2 cut(s)	2969, 3055
PciI	ACATGT	2 cut(s)	1074, 1933
PciSI	GCTCTTC	1 cut(s)	1509
PctI	GAATGC	1 cut(s)	2452
PdmI	GAANNNNTTC	2 cut(s)	954, 3099
PfeI	GAWTC	5 cut(s)	422, 476, 950, 2516, 2585
PflMI	CCANNNNNTGG	2 cut(s)	2133, 2740
PfoI	TCCNGGA	1 cut(s)	272
PleI	GAGTC	6 cut(s)	1114, 1306, 1751, 2115, 2503, 3145
PmaCI	CACGTG	1 cut(s)	908
PmlI	CACGTG	1 cut(s)	908
PpsI	GAGTC	6 cut(s)	1114, 1306, 1751, 2115, 2503, 3145
Ppu21I	YACGTR	1 cut(s)	908
PscI	ACATGT	2 cut(s)	1074, 1933
PshAI	GACNNNNGTC	1 cut(s)	442
Psp6I	CCWGG	7 cut(s)	272, 590, 1125, 1325, 1369, 2552, 2973
PspCI	CACGTG	1 cut(s)	908
PspFI	CCCAGC	3 cut(s)	986, 1025, 1308
PspGI	CCWGG	7 cut(s)	272, 590, 1125, 1325, 1369, 2552, 2973
PspN4I	GGNNCC	5 cut(s)	608, 1463, 1676, 2262, 2972
PspPI	GGNCC	5 cut(s)	46, 1448, 1461, 1674, 2825
PspXI	VCTCGAGB	1 cut(s)	2345
PsrI	GAACNNNNNNTAC	2 cut(s)	1881, 1913
PstI	CTGCAG	2 cut(s)	1019, 2872
PstNI	CAGNNNCTG	2 cut(s)	2775, 2867
PsuI	RGATCY	3 cut(s)	788, 1684, 2039
PvuII	CAGCTG	1 cut(s)	2873
RsaI	GTAC	8 cut(s)	625, 802, 1288, 1719, 1899, 1932, 1943, 1970
RsaNI	GTAC	8 cut(s)	624, 801, 1287, 1718, 1898, 1931, 1942, 1969
RseI	CAYNNNNRTG	2 cut(s)	601, 1806
SapI	GCTCTTC	1 cut(s)	1509
SaqAI	TTAA	8 cut(s)	204, 297, 695, 1389, 1913, 2738, 2808, 2880
Sau96I	GGNCC	5 cut(s)	46, 1448, 1461, 1674, 2825
ScaI	AGTACT	1 cut(s)	1970
SchI	GAGTC	6 cut(s)	1114, 1307, 1751, 2116, 2503, 3146
ScrFI	CCNGG	8 cut(s)	274, 592, 1127, 1327, 1371, 2554, 2975, 3065
SduI	GDGCHC	5 cut(s)	1539, 1711, 2284, 2695, 2793
SfcI	CTRYAG	3 cut(s)	1015, 2868, 3073
Sfr274I	CTCGAG	1 cut(s)	2345
SfuI	TTCGAA	1 cut(s)	2583
SlaI	CTCGAG	1 cut(s)	2345
SmiMI	CAYNNNNRTG	2 cut(s)	601, 1806
SmlI	CTYRAG	4 cut(s)	344, 848, 959, 2345
SmoI	CTYRAG	4 cut(s)	344, 848, 959, 2345
SphI	GCATGC	1 cut(s)	2618
SsiI	CCGC	8 cut(s)	377, 1221, 1270, 1489, 1573, 1959, 2087, 3001
SspI	AATATT	1 cut(s)	2597
SspMI	CTAG	2 cut(s)	27, 3005
StyD4I	CCNGG	8 cut(s)	272, 590, 1125, 1325, 1369, 2552, 2973, 3063
StyI	CCWWGG	1 cut(s)	1678
TaaI	ACNGT	6 cut(s)	147, 1190, 2466, 2671, 2846, 2970
TaiI	ACGT	1 cut(s)	910
TatI	WGTACW	4 cut(s)	1286, 1897, 1941, 1968
TauI	GCSGC	1 cut(s)	1224
TfiI	GAWTC	5 cut(s)	422, 476, 950, 2516, 2585
Tru1I	TTAA	8 cut(s)	204, 297, 695, 1389, 1913, 2738, 2808, 2880
Tru9I	TTAA	8 cut(s)	204, 297, 695, 1389, 1913, 2738, 2808, 2880
TscAI	CASTG	8 cut(s)	58, 235, 1101, 2138, 2464, 2674, 2716, 2868
TseFI	GTSAC	2 cut(s)	594, 2455
Tsp45I	GTSAC	2 cut(s)	594, 2455
TspGWI	ACGGA	1 cut(s)	59
TspRI	CASTG	8 cut(s)	58, 235, 1101, 2138, 2464, 2674, 2716, 2868
Van91I	CCANNNNNTGG	2 cut(s)	2133, 2740
VneI	GTGCAC	4 cut(s)	1535, 1707, 2280, 2691
XapI	RAATTY	8 cut(s)	291, 643, 1578, 1851, 2005, 2365, 2432, 2946
XceI	RCATGY	6 cut(s)	917, 1008, 1078, 1276, 1937, 2618
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1367, 2509
XhoI	CTCGAG	1 cut(s)	2345
XmnI	GAANNNNTTC	2 cut(s)	954, 3099
XspI	CTAG	2 cut(s)	27, 3005
ZrmI	AGTACT	1 cut(s)	1970
Zsp2I	ATGCAT	2 cut(s)	1886, 1923

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.