Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030037.1

Orthogroup ID

OG0009267

Physical Location & Seq

Genomic Coordinates Forward (+)

8751 .. 18380

Gene Structure 9630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030037.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2928 bp

atggatacttctcccagctacttcgaccccgaaaacctcaccaccagagagcaatttcgtcgctacgggaaaaggcacccgaattcgagcatttcgccccaccgagagaattcggcttcctccaggctaccctatgatggccagagcaatatccacagccctactaatgctgcacttcttctggaaaatattaaacaagaatttgaaagcactcctgcaaagactcgttccgtctcgaaaaggcggtccttgtttgatgttaccgaggtggatgatagcgctgaggcagtgcggtattcgttgaagctttgcaagcatgaggaggactcgctggctgatgatggagatacgacttttgctctatttgcatctctacttgactctgctcttcaagggttgatgcctttttctgaactgatactaagactcgaagaatcatgcagaaatgtttcagagtcaattatgtatggttccaacatacggcatcggattgtagaagataagttgatgaggcagaaggctcaactcctgcttgatgaggctgcttcctggtccctcctctggtacctttttggaaaagggaccgaagagacccctaaagaacttatcttgtttccctcaacatcacatttggaggcttgccagtttgttgcggacgatcttacagcacagttatgcttacgaattgttcaatggctagaaggcttgacttccaaagcacttgatctggaaagaaaggtgcgagggtctcacgttggtgcctgtctcccaagctctggaatttggttccatactcaacgctatcttaagaaaggaacatccagtgcaaatactgttcatcacttggattttgatgcctcgacacgagaacaggctcatctactacctgatgacaaaaaacatgatgaatctcttttggaagatgtctggactcttttgagagcaggaagactggaggaggcatgtaacctttgccggtctaagggacaggcatggagagctgcaaccttgtgcatatttggaggttctgaccaatctccgtcaattgaagccctggtgaggaatggaaagaatagaaccttgcaagccattgaattggaaagtcgcattggccaccaatggtatctctggaaatgggcttcttattgtgcatcagagaaaatagctgagcaagatgctggcaaatatgaagcagcagtctatgcggcacaatgtagcaatttaaggcgcatgcttccaatctgcactgactgggagtcagcgtgctgggcaatagcaaagtcatggctagattttcaggtggatttggaattggctcatttacaaccagaaagactggatcaaattacaagcactgcagatgcaattgatggaagtccagcacatggtgatggagctgttcagccttcaagtggaccaggaagttggccactccaagtttcaaaccagcaaccacggcaacttttagatctcattcagaaacttcattcagggtatgccatgtttcttttttctaaccaacatgaggagctggtgggtatatatgcttctcagcttgcacgccaccgttgcattgacctcttcgtgcacatgatggaattgaggctggacagcagcgtgcatgtcaaatataagatcttcctctctgctatagagtatttacaattttctcctctagacaattcaaattcaaaagcaagttttgaagaaattgttgagagggttttttcaagatctcgggaaatcaaagttagtcaatatgataagatatcaggtgttgcagaacagcaccggttgcagagtcttcaaaaagcgatggttatccagtggctatgttttacacccccctccaccattagtaatgttaaggatgtcggcagaaaacttcttctgcgagcactagtacatagcaatatattgttcagggagttttcactggtttcaatgtggagagttcctgcagtgcccattggtgcccacacagtacttagttttcttgctgaacctttgaagcaactttcggaatcttctgataccttggaggatgtttctcaaaacctgaaagagttccacgactggaatgagtattattcttgtgatgcaaaataccggaattggctcaaaattaaattagagaatgcagaggtgtccccagttgacctctcaatggatgaaaaacaaagggctgtttcagcagccaaggagactttgaattcatctctgtcattgctactgagaaaagaaaatccttggttagcttctggtgaagatcatgcctatggatctgtggaacctacatttcttgaattgcatgccacagcaatgctatgcttgccttctggtgagtgtctgtttccagatgcaactgtgtgtacaacgttgatgagtgctctttactcttccgtgagtgaggaagatgtgttaaaccgccaattaatgttaaatgtctccatatcatcaaaggataattgctgcatagaggttgtgcttcgctgcttggcagttccaggtgatggttttgggccacaggaacatgatgatggaggtattcttggtactgttatggctgccggcttcaaaggtgagctacctcgatttcaacctggagttacaatggacatttcccgattagatgcctggtattcaagcaaggatggttctttagaaagtccagcaacatacattgtgcagggcctttgtcgtaggtgctgtcttccagaagtcattcttcgatgcatgcaggtctcactctcgctcatggagttgggtattgcacctgaaagccatgatcagttgattgaattagttgcttgccctgaagctgggtttcttcatttgtttagtcaccaacaattgcaggaatttttattgtttgaaagggaatactcgataagccaaatggaggttcaagaggaaatttcttcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000972 GO:0000973 GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006355 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0008104 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016043 GO:0017038 GO:0017056 GO:0019219 GO:0019222 GO:0022607 GO:0031080 GO:0031090 GO:0031323 GO:0031326 GO:0031503 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0034622 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0046931 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051276 GO:0051292 GO:0051641 GO:0051649 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup84_Nup100

Protein Analysis

975

Amino Acids

109.69

Weight (kDa)

5.33

Isoelectric Point (pI)

54.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14120 AT3G14120 AT3G14120
fragaria_vesca	FvH4_6g35170 FvH4_6g35170
malus_domestica	MD09G1178100.v1.1 MD17G1148600.v1.1
prunus_persica	Prupe.3G037400_v2.0.a1 Prupe.3G037400_v2.0.a1
pyrus_communis	pycom09g09650 pycom17g14190
rosa_chinensis	RchiOBHm_Chr2g0146431
rosa_laevigata	RLG00000020200
rosa_multiflora	Rmu_sc0001986.1_g000003 Rmu_sc0030037.1_g000003
rosa_roxburghii	Rroxscaffold_2G00100100
rosa_rugosa	Rorug02G0394300
rosa_samantha	Rh2AG451100 Rh2BG463600 Rh2CG437900 Rh2DG472600
rosa_wichuraiana	Rw2G036820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2731
Acc65I	GGTACC	1 cut(s)	564
AccB1I	GGYRCC	4 cut(s)	75, 564, 758, 1973
AccB7I	CCANNNNNTGG	3 cut(s)	776, 1385, 2513
AciI	CCGC	5 cut(s)	244, 292, 653, 1205, 2428
AclI	AACGTT	1 cut(s)	2378
AclWI	GGATC	2 cut(s)	1347, 2290
AcoI	YGGCCR	3 cut(s)	139, 1111, 1427
AcsI	RAATTY	8 cut(s)	82, 109, 200, 780, 1687, 2212, 2861, 2916
AcuI	CTGAAG	1 cut(s)	2838
AdeI	CACNNNGTG	1 cut(s)	1388
AfaI	GTAC	5 cut(s)	566, 1905, 1986, 2374, 2557
AfeI	AGCGCT	1 cut(s)	280
AflII	CTTAAG	1 cut(s)	806
AgeI	ACCGGT	1 cut(s)	1791
AhdI	GACNNNNNGTC	1 cut(s)	1255
AhlI	ACTAGT	1 cut(s)	1900
AjnI	CCWGG	7 cut(s)	122, 548, 1053, 1417, 2506, 2602, 2636
AjuI	GAANNNNNNNTTGG	4 cut(s)	1092, 1124, 2889, 2921
AleI	CACNNNNGTG	1 cut(s)	756
Alw21I	GWGCWC	3 cut(s)	1590, 1900, 2392
Alw26I	GTCTC	7 cut(s)	238, 584, 753, 770, 2198, 2452, 2749
Alw44I	GTGCAC	1 cut(s)	1586
AlwI	GGATC	2 cut(s)	1347, 2290
Ama87I	CYCGRG	1 cut(s)	1737
Aor51HI	AGCGCT	1 cut(s)	280
AoxI	GGCC	5 cut(s)	139, 1111, 1427, 2522, 2692
ApaLI	GTGCAC	1 cut(s)	1586
ApeKI	GCWGC	9 cut(s)	170, 542, 1001, 1193, 1614, 2195, 2472, 2493, 2567
ApoI	RAATTY	8 cut(s)	82, 109, 200, 780, 1687, 2212, 2861, 2916
ArsI	GACNNNNNNTTYG	2 cut(s)	230, 262
AseI	ATTAAT	1 cut(s)	2435
AsiGI	ACCGGT	1 cut(s)	1791
Asp700I	GAANNNNTTC	3 cut(s)	448, 2066, 2724
Asp718I	GGTACC	1 cut(s)	564
AspLEI	GCGC	2 cut(s)	281, 1230
AspS9I	GGNCC	6 cut(s)	246, 552, 582, 1415, 2522, 2692
AsuHPI	GGTGA	8 cut(s)	31, 1069, 1400, 2276, 2354, 2522, 2594, 2837
AvaI	CYCGRG	1 cut(s)	1737
AvaII	GGWCC	4 cut(s)	246, 552, 582, 1415
BaeGI	GKGCMC	3 cut(s)	1590, 1968, 1978
BalI	TGGCCA	3 cut(s)	141, 1113, 1429
BanI	GGYRCC	4 cut(s)	75, 564, 758, 1973
BarI	GAAGNNNNNNTAC	2 cut(s)	1531, 1563
BauI	CACGAG	1 cut(s)	864
BbsI	GAAGAC	3 cut(s)	955, 1796, 2705
Bbv12I	GWGCWC	3 cut(s)	1590, 1900, 2392
BbvCI	CCTCAGC	1 cut(s)	282
BbvI	GCAGC	9 cut(s)	157, 529, 988, 1205, 1626, 2207, 2459, 2480, 2554
BccI	CCATC	9 cut(s)	131, 335, 1364, 1385, 1588, 1810, 2507, 2534, 2648
BceAI	ACGGC	2 cut(s)	497, 1472
BcgI	CGANNNNNNTGC	2 cut(s)	41, 75
BciT130I	CCWGG	7 cut(s)	124, 550, 1055, 1419, 2508, 2604, 2638
BclI	TGATCA	1 cut(s)	2788
BcoDI	GTCTC	7 cut(s)	238, 584, 753, 770, 2198, 2452, 2749
BcuI	ACTAGT	1 cut(s)	1900
BfaI	CTAG	4 cut(s)	698, 1289, 1676, 1901
BfmI	CTRYAG	3 cut(s)	1356, 1650, 1959
BfoI	RGCGCY	1 cut(s)	282
BfrI	CTTAAG	1 cut(s)	806
BfuAI	ACCTGC	1 cut(s)	2731
BglII	AGATCT	3 cut(s)	1468, 1635, 1733
BlpI	GCTNAGC	1 cut(s)	1167
BmcAI	AGTACT	1 cut(s)	1986
Bme1390I	CCNGG	7 cut(s)	124, 550, 1055, 1419, 2508, 2604, 2638
Bme18I	GGWCC	4 cut(s)	246, 552, 582, 1415
BmeRI	GACNNNNNGTC	1 cut(s)	1255
BmeT110I	CYCGRG	1 cut(s)	1737
BmgT120I	GGNCC	6 cut(s)	246, 552, 582, 1415, 2522, 2692
BmiI	GGNNCC	9 cut(s)	77, 472, 554, 566, 583, 760, 788, 1975, 2292
BmrFI	CCNGG	7 cut(s)	124, 550, 1055, 1419, 2508, 2604, 2638
BmrI	ACTGGG	2 cut(s)	1261, 2147
BmuI	ACTGGG	2 cut(s)	1261, 2147
BpiI	GAAGAC	3 cut(s)	955, 1796, 2705
BplI	GAGNNNNNCTC	2 cut(s)	311, 343
BpmI	CTGGAG	3 cut(s)	106, 974, 2625
Bpu10I	CCTNAGC	1 cut(s)	282
Bpu1102I	GCTNAGC	1 cut(s)	1167
BsaBI	GATNNNNATC	1 cut(s)	1820
BsaI	GGTCTC	3 cut(s)	584, 753, 2749
BsaJI	CCNNGG	6 cut(s)	264, 1053, 1454, 2037, 2199, 2249
BsaWI	WCCGGW	2 cut(s)	1791, 2109
BsaXI	ACNNNNNCTCC	2 cut(s)	1247, 1277
Bse118I	RCCGGY	3 cut(s)	975, 1791, 2570
Bse1I	ACTGG	9 cut(s)	643, 822, 957, 1256, 1341, 1825, 1941, 2081, 2153
Bse3DI	GCAATG	2 cut(s)	2225, 2328
Bse8I	GATNNNNATC	1 cut(s)	1820
BseBI	CCWGG	7 cut(s)	124, 550, 1055, 1419, 2508, 2604, 2638
BseDI	CCNNGG	6 cut(s)	264, 1053, 1454, 2037, 2199, 2249
BseGI	GGATG	6 cut(s)	277, 818, 1876, 2050, 2176, 2659
BseJI	GATNNNNATC	1 cut(s)	1820
BseMI	GCAATG	2 cut(s)	2225, 2328
BseMII	CTCAG	4 cut(s)	273, 1158, 1565, 2225
BseNI	ACTGG	9 cut(s)	643, 822, 957, 1256, 1341, 1825, 1941, 2081, 2153
BseRI	GAGGAG	5 cut(s)	335, 548, 971, 1541, 1662
BseSI	GKGCMC	3 cut(s)	1590, 1968, 1978
BseXI	GCAGC	9 cut(s)	157, 529, 988, 1205, 1626, 2207, 2459, 2480, 2554
BseYI	CCCAGC	3 cut(s)	14, 1266, 2822
BsgI	GTGCAG	3 cut(s)	156, 1228, 2708
BshFI	GGCC	5 cut(s)	141, 1113, 1429, 2524, 2694
BshNI	GGYRCC	4 cut(s)	75, 564, 758, 1973
BshTI	ACCGGT	1 cut(s)	1791
BsiHKAI	GWGCWC	3 cut(s)	1590, 1900, 2392
BsiHKCI	CYCGRG	1 cut(s)	1737
BsiSI	CCGG	4 cut(s)	976, 1792, 2110, 2571
BslFI	GGGAC	4 cut(s)	538, 595, 999, 2134
BsmAI	GTCTC	7 cut(s)	238, 584, 753, 770, 2198, 2452, 2749
BsmBI	CGTCTC	1 cut(s)	238
BsmFI	GGGAC	4 cut(s)	538, 595, 999, 2134
BsmI	GAATGC	1 cut(s)	2143
BsnI	GGCC	5 cut(s)	141, 1113, 1429, 2524, 2694
Bso31I	GGTCTC	3 cut(s)	584, 753, 2749
BsoBI	CYCGRG	1 cut(s)	1737
Bsp1286I	GDGCHC	5 cut(s)	1590, 1900, 1968, 1978, 2392
Bsp1407I	TGTACA	1 cut(s)	2372
Bsp143I	GATC	9 cut(s)	658, 724, 1339, 1468, 1635, 1733, 2269, 2282, 2788
Bsp1720I	GCTNAGC	1 cut(s)	1167
BspACI	CCGC	5 cut(s)	244, 292, 653, 1205, 2428
BspANI	GGCC	5 cut(s)	141, 1113, 1429, 2524, 2694
BspCNI	CTCAG	4 cut(s)	274, 1159, 1564, 2226
BspLI	GGNNCC	9 cut(s)	77, 472, 554, 566, 583, 760, 788, 1975, 2292
BspMAI	CTGCAG	2 cut(s)	1360, 1963
BspMI	ACCTGC	1 cut(s)	2731
BspPI	GGATC	2 cut(s)	1347, 2290
BspQI	GCTCTTC	1 cut(s)	393
BspT107I	GGYRCC	4 cut(s)	75, 564, 758, 1973
BspTI	CTTAAG	1 cut(s)	806
BspTNI	GGTCTC	3 cut(s)	584, 753, 2749
BsrDI	GCAATG	2 cut(s)	2225, 2328
BsrFI	RCCGGY	3 cut(s)	975, 1791, 2570
BsrGI	TGTACA	1 cut(s)	2372
BsrI	ACTGG	9 cut(s)	643, 822, 957, 1256, 1341, 1825, 1941, 2081, 2153
BssAI	RCCGGY	3 cut(s)	975, 1791, 2570
BssECI	CCNNGG	6 cut(s)	264, 1053, 1454, 2037, 2199, 2249
BssMI	GATC	9 cut(s)	658, 724, 1339, 1468, 1635, 1733, 2269, 2282, 2788
BssSI	CACGAG	1 cut(s)	864
BssT1I	CCWWGG	3 cut(s)	2037, 2199, 2249
Bst2BI	CACGAG	1 cut(s)	864
Bst2UI	CCWGG	7 cut(s)	124, 550, 1055, 1419, 2508, 2604, 2638
Bst4CI	ACNGT	6 cut(s)	672, 835, 1568, 1984, 2368, 2560
Bst6I	CTCTTC	4 cut(s)	393, 582, 1586, 2404
BstAFI	CTTAAG	1 cut(s)	806
BstAPI	GCANNNNNTGC	2 cut(s)	1202, 1795
BstAUI	TGTACA	1 cut(s)	2372
BstDEI	CTNAG	7 cut(s)	282, 422, 981, 1167, 1551, 1988, 2234
BstDSI	CCRYGG	1 cut(s)	1454
BstF5I	GGATG	6 cut(s)	277, 818, 1876, 2050, 2176, 2659
BstH2I	RGCGCY	1 cut(s)	282
BstHHI	GCGC	2 cut(s)	281, 1230
BstKTI	GATC	9 cut(s)	661, 727, 1342, 1471, 1638, 1736, 2272, 2285, 2791
BstMAI	GTCTC	7 cut(s)	238, 584, 753, 770, 2198, 2452, 2749
BstMBI	GATC	9 cut(s)	658, 724, 1339, 1468, 1635, 1733, 2269, 2282, 2788
BstNI	CCWGG	7 cut(s)	124, 550, 1055, 1419, 2508, 2604, 2638
BstNSI	RCATGY	5 cut(s)	966, 1234, 1625, 2315, 2740
BstSCI	CCNGG	7 cut(s)	122, 548, 1053, 1417, 2506, 2602, 2636
BstSFI	CTRYAG	3 cut(s)	1356, 1650, 1959
BstSLI	GKGCMC	3 cut(s)	1590, 1968, 1978
BstV1I	GCAGC	9 cut(s)	157, 529, 988, 1205, 1626, 2207, 2459, 2480, 2554
BstV2I	GAAGAC	3 cut(s)	955, 1796, 2705
BstX2I	RGATCY	4 cut(s)	1468, 1635, 1733, 2282
BstXI	CCANNNNNNTGG	2 cut(s)	1096, 1425
BstYI	RGATCY	4 cut(s)	1468, 1635, 1733, 2282
BsuRI	GGCC	5 cut(s)	141, 1113, 1429, 2524, 2694
BtgI	CCRYGG	1 cut(s)	1454
BtgZI	GCGATG	1 cut(s)	1829
BtsCI	GGATG	6 cut(s)	277, 818, 1876, 2050, 2176, 2659
BtsI	GCAGTG	3 cut(s)	294, 1353, 1968
BtsIMutI	CAGTG	7 cut(s)	294, 829, 1245, 1353, 1832, 1934, 1968
BveI	ACCTGC	1 cut(s)	2731
CfoI	GCGC	2 cut(s)	281, 1230
Cfr10I	RCCGGY	3 cut(s)	975, 1791, 2570
Cfr13I	GGNCC	6 cut(s)	246, 552, 582, 1415, 2522, 2692
Csp6I	GTAC	5 cut(s)	565, 1904, 1985, 2373, 2556
CspAI	ACCGGT	1 cut(s)	1791
CviQI	GTAC	5 cut(s)	565, 1904, 1985, 2373, 2556
DdeI	CTNAG	7 cut(s)	282, 422, 981, 1167, 1551, 1988, 2234
DpnI	GATC	9 cut(s)	660, 726, 1341, 1470, 1637, 1735, 2271, 2284, 2790
DpnII	GATC	9 cut(s)	658, 724, 1339, 1468, 1635, 1733, 2269, 2282, 2788
DraIII	CACNNNGTG	1 cut(s)	1388
DriI	GACNNNNNGTC	1 cut(s)	1255
EaeI	YGGCCR	3 cut(s)	139, 1111, 1427
Eam1104I	CTCTTC	4 cut(s)	393, 582, 1586, 2404
Eam1105I	GACNNNNNGTC	1 cut(s)	1255
EarI	CTCTTC	4 cut(s)	393, 582, 1586, 2404
Eco130I	CCWWGG	3 cut(s)	2037, 2199, 2249
Eco31I	GGTCTC	3 cut(s)	584, 753, 2749
Eco32I	GATATC	1 cut(s)	1770
Eco47I	GGWCC	4 cut(s)	246, 552, 582, 1415
Eco47III	AGCGCT	1 cut(s)	280
Eco57I	CTGAAG	1 cut(s)	2838
Eco88I	CYCGRG	1 cut(s)	1737
EcoO109I	RGGNCCY	1 cut(s)	2692
EcoRI	GAATTC	3 cut(s)	82, 109, 2212
EcoRII	CCWGG	7 cut(s)	122, 548, 1053, 1417, 2506, 2602, 2636
EcoRV	GATATC	1 cut(s)	1770
EcoT14I	CCWWGG	3 cut(s)	2037, 2199, 2249
EcoT22I	ATGCAT	1 cut(s)	2738
ErhI	CCWWGG	3 cut(s)	2037, 2199, 2249
Esp3I	CGTCTC	1 cut(s)	238
FalI	AAGNNNNNCTT	2 cut(s)	2712, 2744
FaqI	GGGAC	4 cut(s)	538, 595, 999, 2134
FbaI	TGATCA	1 cut(s)	2788
FokI	GGATG	6 cut(s)	284, 805, 1883, 2057, 2183, 2666
FspBI	CTAG	4 cut(s)	698, 1289, 1676, 1901
GlaI	GCGC	2 cut(s)	280, 1229
GsaI	CCCAGC	3 cut(s)	18, 1270, 2826
GsuI	CTGGAG	3 cut(s)	106, 974, 2625
HaeII	RGCGCY	1 cut(s)	282
HaeIII	GGCC	5 cut(s)	141, 1113, 1429, 2524, 2694
HapII	CCGG	4 cut(s)	976, 1792, 2110, 2571
HhaI	GCGC	2 cut(s)	281, 1230
Hin6I	GCGC	2 cut(s)	279, 1228
HinP1I	GCGC	2 cut(s)	279, 1228
HincII	GTYRAC	1 cut(s)	2158
HindII	GTYRAC	1 cut(s)	2158
HindIII	AAGCTT	1 cut(s)	305
HpaII	CCGG	4 cut(s)	976, 1792, 2110, 2571
HphI	GGTGA	8 cut(s)	31, 1069, 1400, 2276, 2354, 2522, 2594, 2837
Hpy166II	GTNNAC	4 cut(s)	1415, 1588, 2158, 2373
Hpy188I	TCNGA	8 cut(s)	412, 454, 489, 1030, 1156, 1479, 2023, 2032
Hpy8I	GTNNAC	4 cut(s)	1415, 1588, 2158, 2373
Hpy99I	CGWCG	1 cut(s)	63
HpyAV	CCTTC	4 cut(s)	511, 695, 1416, 2346
HpyCH4III	ACNGT	6 cut(s)	672, 835, 1568, 1984, 2368, 2560
HpyCH4IV	ACGT	2 cut(s)	753, 2378
HpyF3I	CTNAG	7 cut(s)	282, 422, 981, 1167, 1551, 1988, 2234
HpySE526I	ACGT	2 cut(s)	753, 2378
HspAI	GCGC	2 cut(s)	279, 1228
KpnI	GGTACC	1 cut(s)	568
KroI	GCCGGC	1 cut(s)	2570
KroNI	GCCGGC	1 cut(s)	2572
Ksp22I	TGATCA	1 cut(s)	2788
Kzo9I	GATC	9 cut(s)	658, 724, 1339, 1468, 1635, 1733, 2269, 2282, 2788
LguI	GCTCTTC	1 cut(s)	393
LmnI	GCTCC	2 cut(s)	1394, 1528
Lsp1109I	GCAGC	9 cut(s)	157, 529, 988, 1205, 1626, 2207, 2459, 2480, 2554
MaeI	CTAG	4 cut(s)	698, 1289, 1676, 1901
MaeII	ACGT	2 cut(s)	753, 2378
MaeIII	GTNAC	4 cut(s)	259, 965, 2608, 2843
MalI	GATC	9 cut(s)	660, 726, 1341, 1470, 1637, 1735, 2271, 2284, 2790
MboI	GATC	9 cut(s)	658, 724, 1339, 1468, 1635, 1733, 2269, 2282, 2788
MfeI	CAATTG	3 cut(s)	1044, 1365, 2852
MflI	RGATCY	4 cut(s)	1468, 1635, 1733, 2282
MhlI	GDGCHC	5 cut(s)	1590, 1900, 1968, 1978, 2392
MlsI	TGGCCA	3 cut(s)	141, 1113, 1429
MluNI	TGGCCA	3 cut(s)	141, 1113, 1429
MlyI	GAGTC	8 cut(s)	217, 320, 374, 420, 464, 925, 1265, 1810
MmeI	TCCRAC	1 cut(s)	498
Mox20I	TGGCCA	3 cut(s)	141, 1113, 1429
Mph1103I	ATGCAT	1 cut(s)	2738
MroNI	GCCGGC	1 cut(s)	2570
MroXI	GAANNNNTTC	3 cut(s)	448, 2066, 2724
MscI	TGGCCA	3 cut(s)	141, 1113, 1429
MseI	TTAA	8 cut(s)	192, 807, 1223, 1866, 2127, 2423, 2435, 2441
MslI	CAYNNNNRTG	6 cut(s)	673, 756, 1389, 2277, 2321, 2538
Msp20I	TGGCCA	3 cut(s)	141, 1113, 1429
MspCI	CTTAAG	1 cut(s)	806
MspI	CCGG	4 cut(s)	976, 1792, 2110, 2571
MspR9I	CCNGG	7 cut(s)	124, 550, 1055, 1419, 2508, 2604, 2638
MunI	CAATTG	3 cut(s)	1044, 1365, 2852
Mva1269I	GAATGC	1 cut(s)	2143
MvaI	CCWGG	7 cut(s)	124, 550, 1055, 1419, 2508, 2604, 2638
NaeI	GCCGGC	1 cut(s)	2572
NdeII	GATC	9 cut(s)	658, 724, 1339, 1468, 1635, 1733, 2269, 2282, 2788
NgoMIV	GCCGGC	1 cut(s)	2570
NlaIV	GGNNCC	9 cut(s)	77, 472, 554, 566, 583, 760, 788, 1975, 2292
NmuCI	GTSAC	1 cut(s)	2843
NsiI	ATGCAT	1 cut(s)	2738
NspI	RCATGY	5 cut(s)	966, 1234, 1625, 2315, 2740
OliI	CACNNNNGTG	1 cut(s)	756
PaeI	GCATGC	3 cut(s)	1234, 2315, 2740
PciSI	GCTCTTC	1 cut(s)	393
PctI	GAATGC	1 cut(s)	2143
PdiI	GCCGGC	1 cut(s)	2572
PdmI	GAANNNNTTC	3 cut(s)	448, 2066, 2724
PfeI	GAWTC	3 cut(s)	434, 908, 2024
PflMI	CCANNNNNTGG	3 cut(s)	776, 1385, 2513
PinAI	ACCGGT	1 cut(s)	1791
PleI	GAGTC	8 cut(s)	217, 320, 374, 420, 463, 925, 1264, 1809
PpsI	GAGTC	8 cut(s)	217, 320, 374, 420, 463, 925, 1264, 1809
PshBI	ATTAAT	1 cut(s)	2435
Psp1406I	AACGTT	1 cut(s)	2378
Psp6I	CCWGG	7 cut(s)	122, 548, 1053, 1417, 2506, 2602, 2636
PspFI	CCCAGC	3 cut(s)	14, 1266, 2822
PspGI	CCWGG	7 cut(s)	122, 548, 1053, 1417, 2506, 2602, 2636
PspN4I	GGNNCC	9 cut(s)	77, 472, 554, 566, 583, 760, 788, 1975, 2292
PspPI	GGNCC	6 cut(s)	246, 552, 582, 1415, 2522, 2692
PstI	CTGCAG	2 cut(s)	1360, 1963
PsuI	RGATCY	4 cut(s)	1468, 1635, 1733, 2282
RsaI	GTAC	5 cut(s)	566, 1905, 1986, 2374, 2557
RsaNI	GTAC	5 cut(s)	565, 1904, 1985, 2373, 2556
RseI	CAYNNNNRTG	6 cut(s)	673, 756, 1389, 2277, 2321, 2538
SapI	GCTCTTC	1 cut(s)	393
SaqAI	TTAA	8 cut(s)	192, 807, 1223, 1866, 2127, 2423, 2435, 2441
Sau3AI	GATC	9 cut(s)	658, 724, 1339, 1468, 1635, 1733, 2269, 2282, 2788
Sau96I	GGNCC	6 cut(s)	246, 552, 582, 1415, 2522, 2692
ScaI	AGTACT	1 cut(s)	1986
SchI	GAGTC	8 cut(s)	217, 320, 374, 420, 464, 925, 1265, 1810
ScrFI	CCNGG	7 cut(s)	124, 550, 1055, 1419, 2508, 2604, 2638
SduI	GDGCHC	5 cut(s)	1590, 1900, 1968, 1978, 2392
SfcI	CTRYAG	3 cut(s)	1356, 1650, 1959
SinI	GGWCC	4 cut(s)	246, 552, 582, 1415
SmiMI	CAYNNNNRTG	6 cut(s)	673, 756, 1389, 2277, 2321, 2538
SmlI	CTYRAG	1 cut(s)	806
SmoI	CTYRAG	1 cut(s)	806
SpeI	ACTAGT	1 cut(s)	1900
SphI	GCATGC	3 cut(s)	1234, 2315, 2740
SsiI	CCGC	5 cut(s)	244, 292, 653, 1205, 2428
SspI	AATATT	1 cut(s)	190
SspMI	CTAG	4 cut(s)	698, 1289, 1676, 1901
StyD4I	CCNGG	7 cut(s)	122, 548, 1053, 1417, 2506, 2602, 2636
StyI	CCWWGG	3 cut(s)	2037, 2199, 2249
TaaI	ACNGT	6 cut(s)	672, 835, 1568, 1984, 2368, 2560
TaiI	ACGT	2 cut(s)	756, 2381
TaqI	TCGA	8 cut(s)	24, 86, 236, 429, 860, 2593, 2731, 2888
TaqII	GACCGA	1 cut(s)	599
TatI	WGTACW	3 cut(s)	1903, 1984, 2372
TauI	GCSGC	1 cut(s)	1208
TfiI	GAWTC	3 cut(s)	434, 908, 2024
Tru1I	TTAA	8 cut(s)	192, 807, 1223, 1866, 2127, 2423, 2435, 2441
Tru9I	TTAA	8 cut(s)	192, 807, 1223, 1866, 2127, 2423, 2435, 2441
TscAI	CASTG	7 cut(s)	294, 829, 1252, 1360, 1832, 1941, 1968
TseFI	GTSAC	1 cut(s)	2843
TseI	GCWGC	9 cut(s)	170, 542, 1001, 1193, 1614, 2195, 2472, 2493, 2567
Tsp45I	GTSAC	1 cut(s)	2843
TspDTI	ATGAA	7 cut(s)	827, 921, 1203, 1475, 2187, 2205, 2822
TspGWI	ACGGA	3 cut(s)	220, 1029, 2392
TspRI	CASTG	7 cut(s)	294, 829, 1252, 1360, 1832, 1941, 1968
Van91I	CCANNNNNTGG	3 cut(s)	776, 1385, 2513
Vha464I	CTTAAG	1 cut(s)	806
VneI	GTGCAC	1 cut(s)	1586
VpaK11BI	GGWCC	4 cut(s)	246, 552, 582, 1415
VspI	ATTAAT	1 cut(s)	2435
XapI	RAATTY	8 cut(s)	82, 109, 200, 780, 1687, 2212, 2861, 2916
XbaI	TCTAGA	1 cut(s)	1675
XceI	RCATGY	5 cut(s)	966, 1234, 1625, 2315, 2740
XmnI	GAANNNNTTC	3 cut(s)	448, 2066, 2724
XspI	CTAG	4 cut(s)	698, 1289, 1676, 1901
ZrmI	AGTACT	1 cut(s)	1986
Zsp2I	ATGCAT	1 cut(s)	2738

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.