Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0009267

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG437900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3207 bp

ATGGATACTTCTCCCAGCTACTTCGACCCCGAAAACCTCACCACCAGAGAGCAATTTCGTCGCTACGGGAAAAGGCACCCGAATTCGAGCATTTCGCCCCACCGAGAGAATTCGGCTTCCTCCAGGCTACCCTATGATGGCCAGGGCAATATCCACAGCCCTACTAATGCTGCACTTCTTCTGGAAAATATTAAACAAGAATTTGAAAGCACTCCTGCAAAGACTCGTTCCGTCTCGAAAAGGCGGTCGTTGTTTGATGTTACCGAGGTGGATGATAGCGCTGAGGCAGTGCGGTATTCGTTGAAGCTTTGCAAGCATGAGGAGGACTCGCTGGCTGATGATGGAGATACGACTTTTGCTCTATTTGCATCTCTACTTGACTCTGCTCTTCAAGGGTTGATGCCTTTTTCTGAACTGATACTAAGACTCGAAGAATCATGCAGAAATGTTTCAGAGTCAATTATGTATGGTTCCAACATACGGCATCGGATTGTAGAAGATAAGTTGATGAGGCAGAAGGCTCAACTCCTGCTTGATGAGGCTGCTTCCTGGTCCCTCCTCTGGTACCTCTTTGGAAAAGGGACCGAAGAGATCCCTAAAGAACTCATCTTGTTTCCCTCAACATCACATTTGGAGGCTTGCCAGTTTGTTGCGGACGGTCATACAGCACAGTTATGCTTACGAATTGTTCAATGGCTAGAAGGCTTGACTTCCAAAGCACTTGATCTGGAAAGAAAGGTGCGAGGGTCTCATGTTGGTGCCTGTCTCCCAAGCTCTGGAATTTGGTTCCATACTCAACGCTATCTTAAGAAAGGAACATCCAGTGCAAATACTGTTCATCACTTGGATTTTGATGCCCCGACACGAGAACAGGCTCATCTACTACCTGATGACAAAAAACATGATGAATCTCTTTTGGAAGATGTCTGGACTCTTTTGAGAGCAGGAAGACTGGAGGAGGCATGTAACCTTTGCCGGTCTAAGGGACAGGCATGGAGAGCTGCAACCTTGTGCATATTTGGAGGTTCTGACCAATCTCCGTCAATTGAAGCCCTGGTGAGGAATGGAAAGAATAGAACCTTGCAAGCCATTGAATTGGAAAGTCGCATTGGCCACCAATGGTATCTCTGGAAATGGGCTTCTTATTGTGCATCAGAGAAAATAGCTGAGCAAGATGCTGGCAAATATGAAGCAGCAGTCTATGCAGCACAATGTAGCAATTTAAGGCGCATGCTTCCAATCTGCACTGACTGGGAGTCAGCGTGCTGGGCAATAGCAAAGTCATGGCTAGATTTTCAGGTGGATTTGGAATTGGCTCATTTACAACCAGAAAGACTGGATCAAATTACAAGCACTGCAGATGCAATTGATGGAAGTCCAGCACATGGTGATGGAGCTGTTCAGCCTTCAAGTGGATCAGGAAGTTGGCCACTCCAAGTTTCAAACCAGCAACCACGGCAACTTTTAGATCTCATTCAGAAACTTCATTCAGGGGAATTGGTCCACGAAAGCGTTACTCGAGGATGCAAGGAACCACAACGACAAATTGAGATGATTCTAATGTTAGGGGATATCCCACGATTGCTGGACCTTATATGGTCATGGATTGCACCTTCAGAAGATGATCAGAATGTCTTCAGGCCTCATGGGGATCCTCAGATGATTCGGTTTGGTGCACATCTAGTGCTTGTGCTTAGATACTTACTTGATGATGAATTCAAGGATACTGTCAGAGAGAAAATCATGAATATTGGTGATCTCATTGTACACATGTATGCCATGTTTCTCTTTTCTAACCAACATGAGGAGCTGGTGGGTATATATGCTTCTCAGCTTGCACGCCACCGTTGCATTGACCTCTTCGTGCACATGATGGAATTGAGGCTGGACAGCAGCGTGCATGTCAAATATAAGATCTTCCTCTCTGCTATAGAGTATTTACAATTTTCTCCTCTAGACAATTCAAATTCAAAAGCAAGTTTTGAAGAAATTGTTGAGAGGGTTTTTTCAAGATCTCGGGAAATCAAAGTTAGTCAATATGATAAGATATCAGGTGTTGCAGAACAGCACCGGTTGCAGAGTCTTCAAAAAGCGATGGTTATCCAGTGGCTATGTTTTACACCCCCCTCCACCATTAGTAATGTTAAGGATGTCGGCAGAAAACTTCTTCTGCGAGCACTAGTACATAGCAATATATTGTTCAGGGAGTTTTCACTGGTTTCAATGTGGAGAGTTCCTGCAGTGCCCATTGGTGCCCACACAGTACTTAGTTTTCTTGCTGAACCTTTGAAGCAACTTTCGGAATCTTCTGATACCTTGGAGGATGTTTCTCAAAACCTGAAAGAGTTCCACGACTGGAATGAGTATTATTCTTGTGATGCAAAATACCGGAATTGGCTCAAAATTAAATTAGAGAATGCAGAGGTGTCCCCAGTTGACCTCTCAATGGATGAAAAACAAAGGGCTATTTCAGCAGCCAAGGAGACTTTGAATTCATCTCTGTCATTGCTACTGAGAAAAGAAAATCCTTGGTTAGCTTCTGGTGAAGGTCATGCCTATGGATCTGTGGAACCTACATTTCTTGAATTGCATGCCACAGCAATGCTATGCTTGCCTTCTGGTGAGTGTCTGTTTCCAGATGCAACAGTGTGTACAACGTTGATGAGTGCTCTTTACTCTTCCGTGAGTGAGGAAGATGTGTTAAACCGCCAATTAATGTTAAATGTCTCCATATCATCAAAGGATAATTGCTGCATAGAGGTTGTGCTTCGCTGCTTGGCAGTTCCAGGTGATGGTTTTGGGCCACAGGAACATGATGATGGAGGTATTCTTGGTACTGTTATGGCTGCCGGCTTCAAAGGTGAGCTACCTCGGTTTCAACCTGGAGTTACAATGGACATTTCCCGATTAGATGCCTGGTATTCAAGCAAGGATGGTTCTTTAGAAAGTCCAGCAACATACATTGTGCAGGGCCTTTGTCGTAGGTGCTGTCTTCCAGAAGTCATTCTTCGATGCATGCAGGTCTCACTCTCGCTCATAGAGTTGGGTATTGCACCTGAAAGCCATGATCAGTTGATTGAATTAGTTGCTTGCCCTGAAGCTGGGTTTCTTCATTTGTTTAGTCACCAACAATTGCAGGAATTTTTATTGTTTGAAAGGGAATACTCGATAAGCCAAATGGAGGTTCAAGAGGAAATTTCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000972 GO:0000973 GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006355 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0008104 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016043 GO:0017038 GO:0017056 GO:0019219 GO:0019222 GO:0022607 GO:0031080 GO:0031090 GO:0031323 GO:0031326 GO:0031503 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0034622 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0046931 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051276 GO:0051292 GO:0051641 GO:0051649 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup84_Nup100

Protein Analysis

1068

Amino Acids

120.46

Weight (kDa)

5.37

Isoelectric Point (pI)

53.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nup84_Nup100	PF04121	177 - 846	2.5e-60	Nuclear pore protein 84 / 107

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0009267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14120 AT3G14120 AT3G14120
fragaria_vesca	FvH4_6g35170 FvH4_6g35170
malus_domestica	MD09G1178100.v1.1 MD17G1148600.v1.1
prunus_persica	Prupe.3G037400_v2.0.a1 Prupe.3G037400_v2.0.a1
pyrus_communis	pycom09g09650 pycom17g14190
rosa_chinensis	RchiOBHm_Chr2g0146431
rosa_laevigata	RLG00000020200
rosa_multiflora	Rmu_sc0001986.1_g000003 Rmu_sc0030037.1_g000003
rosa_roxburghii	Rroxscaffold_2G00100100
rosa_rugosa	Rorug02G0394300
rosa_samantha	Rh2AG451100 Rh2BG463600 Rh2CG437900 Rh2DG472600
rosa_wichuraiana	Rw2G036820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	3010
Acc65I	GGTACC	1 cut(s)	564
AccB1I	GGYRCC	4 cut(s)	75, 564, 758, 2252
AccB7I	CCANNNNNTGG	3 cut(s)	776, 1385, 2792
AciI	CCGC	4 cut(s)	244, 292, 653, 2707
AclI	AACGTT	1 cut(s)	2657
AclWI	GGATC	6 cut(s)	586, 1347, 1423, 1646, 1659, 2569
AcoI	YGGCCR	3 cut(s)	139, 1111, 1427
AcsI	RAATTY	9 cut(s)	82, 109, 200, 780, 1715, 1966, 2491, 3140, 3195
AcuI	CTGAAG	3 cut(s)	1599, 1621, 3117
AdeI	CACNNNGTG	1 cut(s)	1388
AfaI	GTAC	6 cut(s)	566, 1767, 2184, 2265, 2653, 2836
AfeI	AGCGCT	1 cut(s)	280
AflII	CTTAAG	1 cut(s)	806
AflIII	ACRYGT	1 cut(s)	1770
AgeI	ACCGGT	1 cut(s)	2070
AhdI	GACNNNNNGTC	1 cut(s)	1255
AhlI	ACTAGT	1 cut(s)	2179
AjnI	CCWGG	7 cut(s)	122, 141, 548, 1053, 2785, 2881, 2915
AjuI	GAANNNNNNNTTGG	4 cut(s)	1092, 1124, 3168, 3200
Alw21I	GWGCWC	4 cut(s)	1678, 1869, 2179, 2671
Alw26I	GTCTC	6 cut(s)	238, 753, 770, 2477, 2731, 3028
Alw44I	GTGCAC	2 cut(s)	1674, 1865
AlwI	GGATC	6 cut(s)	586, 1347, 1423, 1646, 1659, 2569
Ama87I	CYCGRG	2 cut(s)	1518, 2016
Aor51HI	AGCGCT	1 cut(s)	280
AoxI	GGCC	6 cut(s)	139, 1111, 1427, 1640, 2801, 2971
ApaLI	GTGCAC	2 cut(s)	1674, 1865
ApoI	RAATTY	9 cut(s)	82, 109, 200, 780, 1715, 1966, 2491, 3140, 3195
ArsI	GACNNNNNNTTYG	2 cut(s)	230, 262
AseI	ATTAAT	1 cut(s)	2714
AsiGI	ACCGGT	1 cut(s)	2070
Asp700I	GAANNNNTTC	4 cut(s)	448, 1634, 2345, 3003
Asp718I	GGTACC	1 cut(s)	564
AspLEI	GCGC	2 cut(s)	281, 1230
AspS9I	GGNCC	6 cut(s)	552, 582, 1501, 1588, 2801, 2971
AsuHPI	GGTGA	9 cut(s)	31, 1069, 1400, 1766, 2555, 2633, 2801, 2873, 3116
AvaI	CYCGRG	2 cut(s)	1518, 2016
AvaII	GGWCC	4 cut(s)	552, 582, 1501, 1588
BaeGI	GKGCMC	4 cut(s)	1678, 1869, 2247, 2257
BalI	TGGCCA	3 cut(s)	141, 1113, 1429
BamHI	GGATCC	1 cut(s)	1651
BanI	GGYRCC	4 cut(s)	75, 564, 758, 2252
BarI	GAAGNNNNNNTAC	2 cut(s)	1810, 1842
BauI	CACGAG	1 cut(s)	864
BbsI	GAAGAC	4 cut(s)	955, 1627, 2075, 2984
Bbv12I	GWGCWC	4 cut(s)	1678, 1869, 2179, 2671
BbvCI	CCTCAGC	1 cut(s)	282
BccI	CCATC	9 cut(s)	131, 335, 1364, 1385, 1867, 2089, 2786, 2813, 2927
BceAI	ACGGC	2 cut(s)	497, 1472
BcgI	CGANNNNNNTGC	2 cut(s)	41, 75
BciT130I	CCWGG	7 cut(s)	124, 143, 550, 1055, 2787, 2883, 2917
BciVI	GTATCC	1 cut(s)	1717
BclI	TGATCA	2 cut(s)	1624, 3067
BcoDI	GTCTC	6 cut(s)	238, 753, 770, 2477, 2731, 3028
BcuI	ACTAGT	1 cut(s)	2179
BfaI	CTAG	5 cut(s)	698, 1289, 1682, 1955, 2180
BfmI	CTRYAG	3 cut(s)	1356, 1929, 2238
BfoI	RGCGCY	1 cut(s)	282
BfrI	CTTAAG	1 cut(s)	806
BfuAI	ACCTGC	1 cut(s)	3010
BfuI	GTATCC	1 cut(s)	1717
BglII	AGATCT	3 cut(s)	1468, 1914, 2012
BlpI	GCTNAGC	1 cut(s)	1167
BmcAI	AGTACT	1 cut(s)	2265
Bme1390I	CCNGG	7 cut(s)	124, 143, 550, 1055, 2787, 2883, 2917
Bme18I	GGWCC	4 cut(s)	552, 582, 1501, 1588
BmeRI	GACNNNNNGTC	1 cut(s)	1255
BmeT110I	CYCGRG	2 cut(s)	1518, 2016
BmgT120I	GGNCC	6 cut(s)	552, 582, 1501, 1588, 2801, 2971
BmrFI	CCNGG	7 cut(s)	124, 143, 550, 1055, 2787, 2883, 2917
BmrI	ACTGGG	2 cut(s)	1261, 2426
BmuI	ACTGGG	2 cut(s)	1261, 2426
BpiI	GAAGAC	4 cut(s)	955, 1627, 2075, 2984
BplI	GAGNNNNNCTC	2 cut(s)	311, 343
BpmI	CTGGAG	3 cut(s)	106, 974, 2904
Bpu10I	CCTNAGC	1 cut(s)	282
Bpu1102I	GCTNAGC	1 cut(s)	1167
BsaBI	GATNNNNATC	1 cut(s)	2099
BsaI	GGTCTC	2 cut(s)	753, 3028
BsaJI	CCNNGG	8 cut(s)	142, 264, 1053, 1454, 2316, 2478, 2528, 2870
BsaWI	WCCGGW	2 cut(s)	2070, 2388
BsaXI	ACNNNNNCTCC	2 cut(s)	1247, 1277
Bse118I	RCCGGY	3 cut(s)	975, 2070, 2849
Bse1I	ACTGG	9 cut(s)	643, 822, 957, 1256, 1341, 2104, 2220, 2360, 2432
Bse3DI	GCAATG	2 cut(s)	2504, 2607
Bse8I	GATNNNNATC	1 cut(s)	2099
BseBI	CCWGG	7 cut(s)	124, 143, 550, 1055, 2787, 2883, 2917
BseDI	CCNNGG	8 cut(s)	142, 264, 1053, 1454, 2316, 2478, 2528, 2870
BseGI	GGATG	7 cut(s)	277, 818, 1529, 2155, 2329, 2455, 2938
BseJI	GATNNNNATC	1 cut(s)	2099
BseMI	GCAATG	2 cut(s)	2504, 2607
BseMII	CTCAG	5 cut(s)	273, 1158, 1670, 1844, 2504
BseNI	ACTGG	9 cut(s)	643, 822, 957, 1256, 1341, 2104, 2220, 2360, 2432
BseRI	GAGGAG	5 cut(s)	335, 548, 971, 1820, 1941
BseSI	GKGCMC	4 cut(s)	1678, 1869, 2247, 2257
BseYI	CCCAGC	3 cut(s)	14, 1266, 3101
BsgI	GTGCAG	3 cut(s)	156, 1228, 2987
Bsh1285I	CGRYCG	1 cut(s)	248
BshFI	GGCC	6 cut(s)	141, 1113, 1429, 1642, 2803, 2973
BshNI	GGYRCC	4 cut(s)	75, 564, 758, 2252
BshTI	ACCGGT	1 cut(s)	2070
BsiEI	CGRYCG	1 cut(s)	248
BsiHKAI	GWGCWC	4 cut(s)	1678, 1869, 2179, 2671
BsiHKCI	CYCGRG	2 cut(s)	1518, 2016
BsiSI	CCGG	4 cut(s)	976, 2071, 2389, 2850
BslFI	GGGAC	4 cut(s)	538, 595, 999, 2413
BsmAI	GTCTC	6 cut(s)	238, 753, 770, 2477, 2731, 3028
BsmBI	CGTCTC	1 cut(s)	238
BsmFI	GGGAC	4 cut(s)	538, 595, 999, 2413
BsmI	GAATGC	1 cut(s)	2422
BsnI	GGCC	6 cut(s)	141, 1113, 1429, 1642, 2803, 2973
Bso31I	GGTCTC	2 cut(s)	753, 3028
BsoBI	CYCGRG	2 cut(s)	1518, 2016
Bsp1286I	GDGCHC	6 cut(s)	1678, 1869, 2179, 2247, 2257, 2671
Bsp1407I	TGTACA	2 cut(s)	1765, 2651
Bsp1720I	GCTNAGC	1 cut(s)	1167
BspACI	CCGC	4 cut(s)	244, 292, 653, 2707
BspANI	GGCC	6 cut(s)	141, 1113, 1429, 1642, 2803, 2973
BspCNI	CTCAG	5 cut(s)	274, 1159, 1669, 1843, 2505
BspHI	TCATGA	1 cut(s)	1743
BspMAI	CTGCAG	2 cut(s)	1360, 2242
BspMI	ACCTGC	1 cut(s)	3010
BspPI	GGATC	6 cut(s)	586, 1347, 1423, 1646, 1659, 2569
BspQI	GCTCTTC	1 cut(s)	393
BspT107I	GGYRCC	4 cut(s)	75, 564, 758, 2252
BspTI	CTTAAG	1 cut(s)	806
BspTNI	GGTCTC	2 cut(s)	753, 3028
BsrDI	GCAATG	2 cut(s)	2504, 2607
BsrFI	RCCGGY	3 cut(s)	975, 2070, 2849
BsrGI	TGTACA	2 cut(s)	1765, 2651
BsrI	ACTGG	9 cut(s)	643, 822, 957, 1256, 1341, 2104, 2220, 2360, 2432
BssAI	RCCGGY	3 cut(s)	975, 2070, 2849
BssECI	CCNNGG	8 cut(s)	142, 264, 1053, 1454, 2316, 2478, 2528, 2870
BssSI	CACGAG	1 cut(s)	864
BssT1I	CCWWGG	3 cut(s)	2316, 2478, 2528
Bst2BI	CACGAG	1 cut(s)	864
Bst2UI	CCWGG	7 cut(s)	124, 143, 550, 1055, 2787, 2883, 2917
Bst4CI	ACNGT	8 cut(s)	659, 672, 835, 1729, 1847, 2263, 2647, 2839
Bst6I	CTCTTC	4 cut(s)	393, 582, 1865, 2683
BstAFI	CTTAAG	1 cut(s)	806
BstAPI	GCANNNNNTGC	2 cut(s)	1202, 2074
BstAUI	TGTACA	2 cut(s)	1765, 2651
BstDEI	CTNAG	9 cut(s)	282, 422, 981, 1167, 1656, 1694, 1830, 2267, 2513
BstDSI	CCRYGG	1 cut(s)	1454
BstF5I	GGATG	7 cut(s)	277, 818, 1529, 2155, 2329, 2455, 2938
BstH2I	RGCGCY	1 cut(s)	282
BstHHI	GCGC	2 cut(s)	281, 1230
BstMAI	GTCTC	6 cut(s)	238, 753, 770, 2477, 2731, 3028
BstMCI	CGRYCG	1 cut(s)	248
BstNI	CCWGG	7 cut(s)	124, 143, 550, 1055, 2787, 2883, 2917
BstNSI	RCATGY	6 cut(s)	966, 1234, 1774, 1904, 2594, 3019
BstSCI	CCNGG	7 cut(s)	122, 141, 548, 1053, 2785, 2881, 2915
BstSFI	CTRYAG	3 cut(s)	1356, 1929, 2238
BstSLI	GKGCMC	4 cut(s)	1678, 1869, 2247, 2257
BstV2I	GAAGAC	4 cut(s)	955, 1627, 2075, 2984
BstX2I	RGATCY	6 cut(s)	591, 1468, 1651, 1914, 2012, 2561
BstXI	CCANNNNNNTGG	1 cut(s)	1096
BstYI	RGATCY	6 cut(s)	591, 1468, 1651, 1914, 2012, 2561
BsuI	GTATCC	1 cut(s)	1717
BsuRI	GGCC	6 cut(s)	141, 1113, 1429, 1642, 2803, 2973
BtgI	CCRYGG	1 cut(s)	1454
BtgZI	GCGATG	1 cut(s)	2108
BtsCI	GGATG	7 cut(s)	277, 818, 1529, 2155, 2329, 2455, 2938
BtsI	GCAGTG	3 cut(s)	294, 1353, 2247
BtsIMutI	CAGTG	8 cut(s)	294, 829, 1245, 1353, 2111, 2213, 2247, 2652
BveI	ACCTGC	1 cut(s)	3010
CciI	TCATGA	1 cut(s)	1743
CfoI	GCGC	2 cut(s)	281, 1230
Cfr10I	RCCGGY	3 cut(s)	975, 2070, 2849
Cfr13I	GGNCC	6 cut(s)	552, 582, 1501, 1588, 2801, 2971
Csp6I	GTAC	6 cut(s)	565, 1766, 2183, 2264, 2652, 2835
CspAI	ACCGGT	1 cut(s)	2070
CviQI	GTAC	6 cut(s)	565, 1766, 2183, 2264, 2652, 2835
DdeI	CTNAG	9 cut(s)	282, 422, 981, 1167, 1656, 1694, 1830, 2267, 2513
DraIII	CACNNNGTG	1 cut(s)	1388
DriI	GACNNNNNGTC	1 cut(s)	1255
EaeI	YGGCCR	3 cut(s)	139, 1111, 1427
Eam1104I	CTCTTC	4 cut(s)	393, 582, 1865, 2683
Eam1105I	GACNNNNNGTC	1 cut(s)	1255
EarI	CTCTTC	4 cut(s)	393, 582, 1865, 2683
Eco130I	CCWWGG	3 cut(s)	2316, 2478, 2528
Eco147I	AGGCCT	1 cut(s)	1642
Eco31I	GGTCTC	2 cut(s)	753, 3028
Eco32I	GATATC	2 cut(s)	1573, 2049
Eco47I	GGWCC	4 cut(s)	552, 582, 1501, 1588
Eco47III	AGCGCT	1 cut(s)	280
Eco57I	CTGAAG	3 cut(s)	1599, 1621, 3117
Eco88I	CYCGRG	2 cut(s)	1518, 2016
EcoO109I	RGGNCCY	1 cut(s)	2971
EcoRI	GAATTC	4 cut(s)	82, 109, 1715, 2491
EcoRII	CCWGG	7 cut(s)	122, 141, 548, 1053, 2785, 2881, 2915
EcoRV	GATATC	2 cut(s)	1573, 2049
EcoT14I	CCWWGG	3 cut(s)	2316, 2478, 2528
EcoT22I	ATGCAT	1 cut(s)	3017
ErhI	CCWWGG	3 cut(s)	2316, 2478, 2528
Esp3I	CGTCTC	1 cut(s)	238
FalI	AAGNNNNNCTT	2 cut(s)	2991, 3023
FaqI	GGGAC	4 cut(s)	538, 595, 999, 2413
FbaI	TGATCA	2 cut(s)	1624, 3067
FokI	GGATG	7 cut(s)	284, 805, 1536, 2162, 2336, 2462, 2945
FspBI	CTAG	5 cut(s)	698, 1289, 1682, 1955, 2180
GlaI	GCGC	2 cut(s)	280, 1229
GsaI	CCCAGC	3 cut(s)	18, 1270, 3105
GsuI	CTGGAG	3 cut(s)	106, 974, 2904
HaeII	RGCGCY	1 cut(s)	282
HaeIII	GGCC	6 cut(s)	141, 1113, 1429, 1642, 2803, 2973
HapII	CCGG	4 cut(s)	976, 2071, 2389, 2850
HhaI	GCGC	2 cut(s)	281, 1230
Hin6I	GCGC	2 cut(s)	279, 1228
HinP1I	GCGC	2 cut(s)	279, 1228
HincII	GTYRAC	1 cut(s)	2437
HindII	GTYRAC	1 cut(s)	2437
HindIII	AAGCTT	1 cut(s)	305
HpaII	CCGG	4 cut(s)	976, 2071, 2389, 2850
HphI	GGTGA	9 cut(s)	31, 1069, 1400, 1766, 2555, 2633, 2801, 2873, 3116
Hpy166II	GTNNAC	6 cut(s)	1504, 1676, 1768, 1867, 2437, 2652
Hpy8I	GTNNAC	6 cut(s)	1504, 1676, 1768, 1867, 2437, 2652
Hpy99I	CGWCG	1 cut(s)	63
HpyAV	CCTTC	6 cut(s)	511, 695, 1416, 1623, 2540, 2625
HpyCH4III	ACNGT	8 cut(s)	659, 672, 835, 1729, 1847, 2263, 2647, 2839
HpyCH4IV	ACGT	1 cut(s)	2657
HpyF3I	CTNAG	9 cut(s)	282, 422, 981, 1167, 1656, 1694, 1830, 2267, 2513
HpySE526I	ACGT	1 cut(s)	2657
HspAI	GCGC	2 cut(s)	279, 1228
KpnI	GGTACC	1 cut(s)	568
KroI	GCCGGC	1 cut(s)	2849
KroNI	GCCGGC	1 cut(s)	2851
Ksp22I	TGATCA	2 cut(s)	1624, 3067
LguI	GCTCTTC	1 cut(s)	393
LmnI	GCTCC	2 cut(s)	1394, 1807
MaeI	CTAG	5 cut(s)	698, 1289, 1682, 1955, 2180
MaeII	ACGT	1 cut(s)	2657
MaeIII	GTNAC	5 cut(s)	259, 965, 1513, 2887, 3122
MfeI	CAATTG	3 cut(s)	1044, 1365, 3131
MflI	RGATCY	6 cut(s)	591, 1468, 1651, 1914, 2012, 2561
MhlI	GDGCHC	6 cut(s)	1678, 1869, 2179, 2247, 2257, 2671
MlsI	TGGCCA	3 cut(s)	141, 1113, 1429
MluNI	TGGCCA	3 cut(s)	141, 1113, 1429
MlyI	GAGTC	8 cut(s)	217, 320, 374, 420, 464, 925, 1265, 2089
MmeI	TCCRAC	1 cut(s)	498
Mox20I	TGGCCA	3 cut(s)	141, 1113, 1429
Mph1103I	ATGCAT	1 cut(s)	3017
MroNI	GCCGGC	1 cut(s)	2849
MroXI	GAANNNNTTC	4 cut(s)	448, 1634, 2345, 3003
MscI	TGGCCA	3 cut(s)	141, 1113, 1429
MseI	TTAA	8 cut(s)	192, 807, 1223, 2145, 2406, 2702, 2714, 2720
MslI	CAYNNNNRTG	7 cut(s)	673, 756, 1389, 1773, 2556, 2600, 2817
Msp20I	TGGCCA	3 cut(s)	141, 1113, 1429
MspCI	CTTAAG	1 cut(s)	806
MspI	CCGG	4 cut(s)	976, 2071, 2389, 2850
MspR9I	CCNGG	7 cut(s)	124, 143, 550, 1055, 2787, 2883, 2917
MunI	CAATTG	3 cut(s)	1044, 1365, 3131
Mva1269I	GAATGC	1 cut(s)	2422
MvaI	CCWGG	7 cut(s)	124, 143, 550, 1055, 2787, 2883, 2917
NaeI	GCCGGC	1 cut(s)	2851
NgoMIV	GCCGGC	1 cut(s)	2849
NmuCI	GTSAC	1 cut(s)	3122
NsiI	ATGCAT	1 cut(s)	3017
NspI	RCATGY	6 cut(s)	966, 1234, 1774, 1904, 2594, 3019
PaeI	GCATGC	3 cut(s)	1234, 2594, 3019
PaeR7I	CTCGAG	1 cut(s)	1518
PagI	TCATGA	1 cut(s)	1743
PceI	AGGCCT	1 cut(s)	1642
PciI	ACATGT	1 cut(s)	1770
PciSI	GCTCTTC	1 cut(s)	393
PctI	GAATGC	1 cut(s)	2422
PdiI	GCCGGC	1 cut(s)	2851
PdmI	GAANNNNTTC	4 cut(s)	448, 1634, 2345, 3003
PfeI	GAWTC	5 cut(s)	434, 908, 1555, 1663, 2303
PflMI	CCANNNNNTGG	3 cut(s)	776, 1385, 2792
PinAI	ACCGGT	1 cut(s)	2070
PleI	GAGTC	8 cut(s)	217, 320, 374, 420, 463, 925, 1264, 2088
PpsI	GAGTC	8 cut(s)	217, 320, 374, 420, 463, 925, 1264, 2088
PscI	ACATGT	1 cut(s)	1770
PshBI	ATTAAT	1 cut(s)	2714
Psp1406I	AACGTT	1 cut(s)	2657
Psp6I	CCWGG	7 cut(s)	122, 141, 548, 1053, 2785, 2881, 2915
PspFI	CCCAGC	3 cut(s)	14, 1266, 3101
PspGI	CCWGG	7 cut(s)	122, 141, 548, 1053, 2785, 2881, 2915
PspPI	GGNCC	6 cut(s)	552, 582, 1501, 1588, 2801, 2971
PspXI	VCTCGAGB	1 cut(s)	1518
PstI	CTGCAG	2 cut(s)	1360, 2242
PsuI	RGATCY	6 cut(s)	591, 1468, 1651, 1914, 2012, 2561
RsaI	GTAC	6 cut(s)	566, 1767, 2184, 2265, 2653, 2836
RsaNI	GTAC	6 cut(s)	565, 1766, 2183, 2264, 2652, 2835
RseI	CAYNNNNRTG	7 cut(s)	673, 756, 1389, 1773, 2556, 2600, 2817
SapI	GCTCTTC	1 cut(s)	393
SaqAI	TTAA	8 cut(s)	192, 807, 1223, 2145, 2406, 2702, 2714, 2720
Sau96I	GGNCC	6 cut(s)	552, 582, 1501, 1588, 2801, 2971
ScaI	AGTACT	1 cut(s)	2265
SchI	GAGTC	8 cut(s)	217, 320, 374, 420, 464, 925, 1265, 2089
ScrFI	CCNGG	7 cut(s)	124, 143, 550, 1055, 2787, 2883, 2917
SduI	GDGCHC	6 cut(s)	1678, 1869, 2179, 2247, 2257, 2671
SfcI	CTRYAG	3 cut(s)	1356, 1929, 2238
Sfr274I	CTCGAG	1 cut(s)	1518
SinI	GGWCC	4 cut(s)	552, 582, 1501, 1588
SlaI	CTCGAG	1 cut(s)	1518
SmiMI	CAYNNNNRTG	7 cut(s)	673, 756, 1389, 1773, 2556, 2600, 2817
SmlI	CTYRAG	2 cut(s)	806, 1518
SmoI	CTYRAG	2 cut(s)	806, 1518
SpeI	ACTAGT	1 cut(s)	2179
SphI	GCATGC	3 cut(s)	1234, 2594, 3019
SseBI	AGGCCT	1 cut(s)	1642
SsiI	CCGC	4 cut(s)	244, 292, 653, 2707
SspI	AATATT	2 cut(s)	190, 1750
SspMI	CTAG	5 cut(s)	698, 1289, 1682, 1955, 2180
StuI	AGGCCT	1 cut(s)	1642
StyD4I	CCNGG	7 cut(s)	122, 141, 548, 1053, 2785, 2881, 2915
StyI	CCWWGG	3 cut(s)	2316, 2478, 2528
TaaI	ACNGT	8 cut(s)	659, 672, 835, 1729, 1847, 2263, 2647, 2839
TaiI	ACGT	1 cut(s)	2660
TaqI	TCGA	7 cut(s)	24, 86, 236, 429, 1519, 3010, 3167
TaqII	GACCGA	1 cut(s)	599
TatI	WGTACW	4 cut(s)	1765, 2182, 2263, 2651
TfiI	GAWTC	5 cut(s)	434, 908, 1555, 1663, 2303
Tru1I	TTAA	8 cut(s)	192, 807, 1223, 2145, 2406, 2702, 2714, 2720
Tru9I	TTAA	8 cut(s)	192, 807, 1223, 2145, 2406, 2702, 2714, 2720
TscAI	CASTG	8 cut(s)	294, 829, 1252, 1360, 2111, 2220, 2247, 2652
TseFI	GTSAC	1 cut(s)	3122
Tsp45I	GTSAC	1 cut(s)	3122
TspDTI	ATGAA	9 cut(s)	827, 921, 1203, 1475, 1728, 1760, 2466, 2484, 3101
TspGWI	ACGGA	3 cut(s)	220, 1029, 2671
TspRI	CASTG	8 cut(s)	294, 829, 1252, 1360, 2111, 2220, 2247, 2652
Van91I	CCANNNNNTGG	3 cut(s)	776, 1385, 2792
Vha464I	CTTAAG	1 cut(s)	806
VneI	GTGCAC	2 cut(s)	1674, 1865
VpaK11BI	GGWCC	4 cut(s)	552, 582, 1501, 1588
VspI	ATTAAT	1 cut(s)	2714
XapI	RAATTY	9 cut(s)	82, 109, 200, 780, 1715, 1966, 2491, 3140, 3195
XbaI	TCTAGA	1 cut(s)	1954
XceI	RCATGY	6 cut(s)	966, 1234, 1774, 1904, 2594, 3019
XhoI	CTCGAG	1 cut(s)	1518
XmnI	GAANNNNTTC	4 cut(s)	448, 1634, 2345, 3003
XspI	CTAG	5 cut(s)	698, 1289, 1682, 1955, 2180
ZrmI	AGTACT	1 cut(s)	2265
Zsp2I	ATGCAT	1 cut(s)	3017

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.