Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0009267

Physical Location & Seq

Genomic Coordinates Forward (+)

62366949 .. 62377352

Gene Structure 10404 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020200

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3210 bp

ATGGATTACGAAATGGACACTTCTCCCAGCTACTCCGACCCCGAAAACCTCACCACCAGAGAGCAATTTCGTCGCTACGGGAAAAGGCACCCGAATTCGCCCTACCGAGAGAATTCGGCTTCCTCCAGGCTACTCTATGATGGCCAGAGCAATATCCACAGCCCTACTAATGCTGCACTTCTTCTGGAAAATATTAAACAAGAATTTGAAAACACTCCTGCAAAGACTCGTTCCGTCTCGAAAAGGCGGTCGTCGTTTGATGTTACCGAGGTGGATGATAGCGCTGAGGCAGTGCGGTATTCGTTGAAGCTTTGCAAGCATGAGGAGGACTCGCTGGCTGATGATGGAGATACGACTTTTGCTCTATTTGCATCTCTACTTGACTCTGCTCTTCAAGGGTTGATGCCTTTTTCTGAACTGATACTAAGACTCGAAGAATCATGCAGAAATGTTTCAGAGTCAATTATGTATGGTTCCAACATACGGCATCGGATTGTAGAAGATAAGTTGATGAGGCAGAAGGCTCAACTCCTGCTTGATGAGGCTGCTTCCTGGTCCCTCCTCTGGTACCTCTTTGGAAAAGGGACCGAAGAGATCCCTAAAGAACTCATCTTGTTTCCCTCGACATCACATTTGGAGGCTTGCCAGTTTGTTGCGGACAATCTTACAGCACAGCTATGCTTACGAATTGTTCAATGGCTAGAAGGCTTGACTTCCAAAGCACTTGATCTGGAAAGAAAGGTGCGAGGGTCTCATGTTGGTGCTTGTCTCCCAAGCTCTGGAATTTGGTTCCATACTCAACGCTATCTTAAGAAAGGAACATCCAGTGCAAATACTGTTCATCACTTGGATTTTGATGCCCCGACACGAGAACAGGCTCATCTACTACCTGATGACAAAAAACATGATGAATCTCTTTTGGAAGATGTCTGGACTCTTTTGAGAGCAGGAAGACTGGAGGAGGCATGTAACCTTTGCCGGTCTAAGGGACAGGCATGGAGAGCTGCAACCTTGTGCATATTTGGAGGTTCTGACCAATCTCCGTCAATTGAAGCCCTGGTGAGGAATGGAAAGAATAGAACCTTGCAAGCCATTGAATTGGAAAGTCGCATTGGCCACCAATGGTATCTCTGGAAATGGGCTTCTTATTGTGCATCAGAGAAAATAGCTGAGCAAGATGCTGGCAAATATGAAGCAGCAGTCTATGCGGCACAATGTAGCAATTTAAGGCGCACGCTTCCAATCTGCACTGACTGGGAGTCAGCGTGCTGGGCAATAGCAAAGTCATGGCTAGATTTTCAGGTGGATTTGGAATTGGCTCATTTACAACCAGAAAGACTGGATCAAATTACAAGCACTGCAGTTGCAATTGATGGAAGTCCAGCACATGGTGATGGAGCTGTTCAGCCTTCAAGTGGACCAGGAAGTTGGCCACTCCAAGTTTCAAACCAGCAACCACGGCAACTTTTAGATCTCATTCAGAAACTTCATTCAGGGGAATTGGTCCACGAAAGCGTTACTCGAGGATGCAAGGAACCACAACGACAAATTGAGATGATTCTAATGTTAGGGGATATCCCACGATTGCTGGACCTTATATGGTCATGGATTGCACCTTCAGAAGATGATCAGAATGTCTTCAGGCCTCATGGGGATCCTCAGATGATTCGGTTTGGTGCACATCTAGTGCTTGTGCTTAGATACTTACTTGATGATGAATTCAAGGATACTGTCAGAGAGAAAATCATGAATATTGGTGATCTCATTGTACACATGTATGCCATGTTTCTCTTTTCTAACCAACATGAGGAGCTGGTGGGTATATATGCTTCTCAGCTTGCACGCCACCGTTGCATTGACCTCTTTGTGCACATGATGGAATTGAGGCTGGACAGCAGCGTGCATGTCAAATATAAGATCTTCCTCTCTGCTATAGAGTATGTACAATTTTCTCCTCTAGACAATTCAAATTCAAAAGCAAGTTTTGAAGAAATTGTTGAGAGGGTTTTTTCAAGATCTCGGGAAATCAAAGTTAGTCAATATGATAAGATATCAGGTGTTGCAGAACAGCACCGGTTGCAGAGTCTTCAAAAAGCGATGGTTATCCAGTGGCTATGTTTTACACCCCCCTCCACCATTAGTAATGTTAAGGATGTCGGCAGAAAACTTCTTCTGCGAGCACTAGTACATAGCAATATATTGTTCAGGGAGTTTTCACTGGTTTCAATGTGGAGAGTTCCTGCACTGCCCATTGGTGCCCACACAGTACTTAGTTTTCTTGCTGAACCTTTGAAGCAACTTTCGGAATCTTCTGATACCTTGGAGGATGTTTCTCAAAACCTGAAAGAGTTTCATGACTGGAATGAGTATTATTCTTGTGATGCAAAATACCGGAATTGGCTCAAAATTAAATTAGAGAATGCAGAGGTGTCCCCAGTTGACCTCTCAATGGATGAAAAACAAAGGGCTGTTTCAGCAGCCAAGGAGACTTTGAATTCATCTCTGTCATTGCTACTGAGAAAAGAAAATCCTTGGTTAGCTTCTGGTGAAGATCATGTCTATGGATCTGTGGAACCTACATTTCTTGAATTGCATGCCACAGCAATGCTATGCTTGCCTTCTGGTGAGTGTCTGTTTCCAGATGCAACTGTGTGTACAACGTTGATGAGTGCTCTTTACTCTTCCGTGAGTGAGGAAGATGTGTTAAACCGCCAATTAATGTTAAATGTCTCCATATCATCAAAGGATAATTGCTGCATAGAGGTTGTGCTTCGCTGCTTGGCAGTTCCAGGTGATGGTTTTTGGCCACAGGAACATGATGATGGAGGTATTCTTGGTACTGTTATGGCTGCCGGATTCAAAGGTGAGCTAACTCGATTTCAACCTGGAGTTACAATGGACATTTCCCGATTAGATGCCTGGTATTCAAGCAAGGATGGTTCTTTAGAAAGTCCAGCAACATACATTGTGCAGGGCCTTTGTCGTAGGTGCTGTCTTCCAGAAGTCATTCTTCGATGCATGCAGGTCTCACTCTCGCTCATAGAGTTGGGTATTGCACCTGAAAGCCATGATCAGTTGATTGAATTAGTTGCTTGCCCTGAAGCTGGGTTTCTTCATTTGTTTAGTCACCAACAATTGCAGGAATTTTTATTGTTTGAAAGGGAATACTCGATAAGCCAAATGGAGGTTCAAGAGGAAATTTCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000972 GO:0000973 GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006355 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0008104 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016043 GO:0017038 GO:0017056 GO:0019219 GO:0019222 GO:0022607 GO:0031080 GO:0031090 GO:0031323 GO:0031326 GO:0031503 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0034622 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0046931 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051276 GO:0051292 GO:0051641 GO:0051649 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup84_Nup100

Protein Analysis

1070

Amino Acids

120.93

Weight (kDa)

5.28

Isoelectric Point (pI)

52.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nup84_Nup100	PF04121	178 - 852	1.1e-60	Nuclear pore protein 84 / 107

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0009267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14120 AT3G14120 AT3G14120
fragaria_vesca	FvH4_6g35170 FvH4_6g35170
malus_domestica	MD09G1178100.v1.1 MD17G1148600.v1.1
prunus_persica	Prupe.3G037400_v2.0.a1 Prupe.3G037400_v2.0.a1
pyrus_communis	pycom09g09650 pycom17g14190
rosa_chinensis	RchiOBHm_Chr2g0146431
rosa_laevigata	RLG00000020200
rosa_multiflora	Rmu_sc0001986.1_g000003 Rmu_sc0030037.1_g000003
rosa_roxburghii	Rroxscaffold_2G00100100
rosa_rugosa	Rorug02G0394300
rosa_samantha	Rh2AG451100 Rh2BG463600 Rh2CG437900 Rh2DG472600
rosa_wichuraiana	Rw2G036820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	3013
Acc65I	GGTACC	1 cut(s)	567
AccB1I	GGYRCC	3 cut(s)	87, 567, 2255
AccB7I	CCANNNNNTGG	3 cut(s)	779, 1388, 2795
AciI	CCGC	5 cut(s)	247, 295, 656, 1208, 2710
AclI	AACGTT	1 cut(s)	2660
AclWI	GGATC	5 cut(s)	589, 1350, 1649, 1662, 2572
AcoI	YGGCCR	4 cut(s)	142, 1114, 1430, 2804
AcsI	RAATTY	9 cut(s)	94, 112, 203, 783, 1718, 1969, 2494, 3143, 3198
AcuI	CTGAAG	3 cut(s)	1602, 1624, 3120
AdeI	CACNNNGTG	1 cut(s)	1391
AfaI	GTAC	7 cut(s)	569, 1770, 1944, 2187, 2268, 2656, 2839
AfeI	AGCGCT	1 cut(s)	283
AflII	CTTAAG	1 cut(s)	809
AflIII	ACRYGT	1 cut(s)	1773
AgeI	ACCGGT	1 cut(s)	2073
AhdI	GACNNNNNGTC	1 cut(s)	1258
AhlI	ACTAGT	1 cut(s)	2182
AjnI	CCWGG	7 cut(s)	125, 551, 1056, 1420, 2788, 2884, 2918
AjuI	GAANNNNNNNTTGG	4 cut(s)	1095, 1127, 3171, 3203
Alw21I	GWGCWC	4 cut(s)	1681, 1872, 2182, 2674
Alw26I	GTCTC	6 cut(s)	241, 756, 773, 2480, 2734, 3031
Alw44I	GTGCAC	2 cut(s)	1677, 1868
AlwI	GGATC	5 cut(s)	589, 1350, 1649, 1662, 2572
Ama87I	CYCGRG	2 cut(s)	1521, 2019
Aor51HI	AGCGCT	1 cut(s)	283
AoxI	GGCC	6 cut(s)	142, 1114, 1430, 1643, 2804, 2974
ApaLI	GTGCAC	2 cut(s)	1677, 1868
ApeKI	GCWGC	9 cut(s)	173, 545, 1004, 1196, 1896, 2477, 2754, 2775, 2849
ApoI	RAATTY	9 cut(s)	94, 112, 203, 783, 1718, 1969, 2494, 3143, 3198
ArsI	GACNNNNNNTTYG	4 cut(s)	233, 265, 616, 648
AseI	ATTAAT	1 cut(s)	2717
AsiGI	ACCGGT	1 cut(s)	2073
Asp700I	GAANNNNTTC	3 cut(s)	451, 1637, 3006
Asp718I	GGTACC	1 cut(s)	567
AspLEI	GCGC	2 cut(s)	284, 1233
AspS9I	GGNCC	6 cut(s)	555, 585, 1418, 1504, 1591, 2974
AsuHPI	GGTGA	9 cut(s)	43, 1072, 1403, 1769, 2558, 2636, 2804, 2876, 3119
AvaI	CYCGRG	2 cut(s)	1521, 2019
AvaII	GGWCC	5 cut(s)	555, 585, 1418, 1504, 1591
BaeGI	GKGCMC	3 cut(s)	1681, 1872, 2260
BalI	TGGCCA	4 cut(s)	144, 1116, 1432, 2806
BamHI	GGATCC	1 cut(s)	1654
BanI	GGYRCC	3 cut(s)	87, 567, 2255
BarI	GAAGNNNNNNTAC	2 cut(s)	1813, 1845
BauI	CACGAG	1 cut(s)	867
BbsI	GAAGAC	4 cut(s)	958, 1630, 2078, 2987
Bbv12I	GWGCWC	4 cut(s)	1681, 1872, 2182, 2674
BbvCI	CCTCAGC	1 cut(s)	285
BbvI	GCAGC	9 cut(s)	160, 532, 991, 1208, 1908, 2489, 2741, 2762, 2836
BccI	CCATC	9 cut(s)	134, 338, 1367, 1388, 1870, 2092, 2789, 2816, 2930
BceAI	ACGGC	2 cut(s)	500, 1475
BcgI	CGANNNNNNTGC	2 cut(s)	53, 87
BciT130I	CCWGG	7 cut(s)	127, 553, 1058, 1422, 2790, 2886, 2920
BciVI	GTATCC	1 cut(s)	1720
BclI	TGATCA	2 cut(s)	1627, 3070
BcoDI	GTCTC	6 cut(s)	241, 756, 773, 2480, 2734, 3031
BcuI	ACTAGT	1 cut(s)	2182
BfaI	CTAG	5 cut(s)	701, 1292, 1685, 1958, 2183
BfmI	CTRYAG	2 cut(s)	1359, 1932
BfoI	RGCGCY	1 cut(s)	285
BfrI	CTTAAG	1 cut(s)	809
BfuAI	ACCTGC	1 cut(s)	3013
BfuI	GTATCC	1 cut(s)	1720
BglII	AGATCT	3 cut(s)	1471, 1917, 2015
BlpI	GCTNAGC	1 cut(s)	1170
BmcAI	AGTACT	1 cut(s)	2268
Bme1390I	CCNGG	7 cut(s)	127, 553, 1058, 1422, 2790, 2886, 2920
Bme18I	GGWCC	5 cut(s)	555, 585, 1418, 1504, 1591
BmeRI	GACNNNNNGTC	1 cut(s)	1258
BmeT110I	CYCGRG	2 cut(s)	1521, 2019
BmgT120I	GGNCC	6 cut(s)	555, 585, 1418, 1504, 1591, 2974
BmrFI	CCNGG	7 cut(s)	127, 553, 1058, 1422, 2790, 2886, 2920
BmrI	ACTGGG	2 cut(s)	1264, 2429
BmuI	ACTGGG	2 cut(s)	1264, 2429
BpiI	GAAGAC	4 cut(s)	958, 1630, 2078, 2987
BplI	GAGNNNNNCTC	2 cut(s)	314, 346
BpmI	CTGGAG	3 cut(s)	109, 977, 2907
Bpu10I	CCTNAGC	1 cut(s)	285
Bpu1102I	GCTNAGC	1 cut(s)	1170
BsaBI	GATNNNNATC	1 cut(s)	2102
BsaI	GGTCTC	2 cut(s)	756, 3031
BsaJI	CCNNGG	6 cut(s)	267, 1056, 1457, 2319, 2481, 2531
BsaWI	WCCGGW	2 cut(s)	2073, 2391
BsaXI	ACNNNNNCTCC	2 cut(s)	1250, 1280
Bse118I	RCCGGY	2 cut(s)	978, 2073
Bse1I	ACTGG	9 cut(s)	646, 825, 960, 1259, 1344, 2107, 2223, 2363, 2435
Bse3DI	GCAATG	2 cut(s)	2507, 2610
Bse8I	GATNNNNATC	1 cut(s)	2102
BseBI	CCWGG	7 cut(s)	127, 553, 1058, 1422, 2790, 2886, 2920
BseDI	CCNNGG	6 cut(s)	267, 1056, 1457, 2319, 2481, 2531
BseGI	GGATG	7 cut(s)	280, 821, 1532, 2158, 2332, 2458, 2941
BseJI	GATNNNNATC	1 cut(s)	2102
BseMI	GCAATG	2 cut(s)	2507, 2610
BseMII	CTCAG	5 cut(s)	276, 1161, 1673, 1847, 2507
BseNI	ACTGG	9 cut(s)	646, 825, 960, 1259, 1344, 2107, 2223, 2363, 2435
BseRI	GAGGAG	5 cut(s)	338, 551, 974, 1823, 1944
BseSI	GKGCMC	3 cut(s)	1681, 1872, 2260
BseXI	GCAGC	9 cut(s)	160, 532, 991, 1208, 1908, 2489, 2741, 2762, 2836
BseYI	CCCAGC	3 cut(s)	26, 1269, 3104
BsgI	GTGCAG	4 cut(s)	159, 1231, 2226, 2990
Bsh1285I	CGRYCG	1 cut(s)	251
BshFI	GGCC	6 cut(s)	144, 1116, 1432, 1645, 2806, 2976
BshNI	GGYRCC	3 cut(s)	87, 567, 2255
BshTI	ACCGGT	1 cut(s)	2073
BsiEI	CGRYCG	1 cut(s)	251
BsiHKAI	GWGCWC	4 cut(s)	1681, 1872, 2182, 2674
BsiHKCI	CYCGRG	2 cut(s)	1521, 2019
BsiSI	CCGG	4 cut(s)	979, 2074, 2392, 2853
BslFI	GGGAC	4 cut(s)	541, 598, 1002, 2416
BsmAI	GTCTC	6 cut(s)	241, 756, 773, 2480, 2734, 3031
BsmBI	CGTCTC	1 cut(s)	241
BsmFI	GGGAC	4 cut(s)	541, 598, 1002, 2416
BsmI	GAATGC	1 cut(s)	2425
BsnI	GGCC	6 cut(s)	144, 1116, 1432, 1645, 2806, 2976
Bso31I	GGTCTC	2 cut(s)	756, 3031
BsoBI	CYCGRG	2 cut(s)	1521, 2019
Bsp1286I	GDGCHC	5 cut(s)	1681, 1872, 2182, 2260, 2674
Bsp1407I	TGTACA	3 cut(s)	1768, 1942, 2654
Bsp1720I	GCTNAGC	1 cut(s)	1170
BspACI	CCGC	5 cut(s)	247, 295, 656, 1208, 2710
BspANI	GGCC	6 cut(s)	144, 1116, 1432, 1645, 2806, 2976
BspCNI	CTCAG	5 cut(s)	277, 1162, 1672, 1846, 2508
BspHI	TCATGA	2 cut(s)	1746, 2353
BspMAI	CTGCAG	1 cut(s)	1363
BspMI	ACCTGC	1 cut(s)	3013
BspPI	GGATC	5 cut(s)	589, 1350, 1649, 1662, 2572
BspQI	GCTCTTC	1 cut(s)	396
BspT107I	GGYRCC	3 cut(s)	87, 567, 2255
BspTI	CTTAAG	1 cut(s)	809
BspTNI	GGTCTC	2 cut(s)	756, 3031
BsrDI	GCAATG	2 cut(s)	2507, 2610
BsrFI	RCCGGY	2 cut(s)	978, 2073
BsrGI	TGTACA	3 cut(s)	1768, 1942, 2654
BsrI	ACTGG	9 cut(s)	646, 825, 960, 1259, 1344, 2107, 2223, 2363, 2435
BssAI	RCCGGY	2 cut(s)	978, 2073
BssECI	CCNNGG	6 cut(s)	267, 1056, 1457, 2319, 2481, 2531
BssSI	CACGAG	1 cut(s)	867
BssT1I	CCWWGG	3 cut(s)	2319, 2481, 2531
Bst2BI	CACGAG	1 cut(s)	867
Bst2UI	CCWGG	7 cut(s)	127, 553, 1058, 1422, 2790, 2886, 2920
Bst4CI	ACNGT	6 cut(s)	838, 1732, 1850, 2266, 2650, 2842
Bst6I	CTCTTC	3 cut(s)	396, 585, 2686
BstAFI	CTTAAG	1 cut(s)	809
BstAPI	GCANNNNNTGC	2 cut(s)	1205, 2077
BstAUI	TGTACA	3 cut(s)	1768, 1942, 2654
BstDEI	CTNAG	9 cut(s)	285, 425, 984, 1170, 1659, 1697, 1833, 2270, 2516
BstDSI	CCRYGG	1 cut(s)	1457
BstF5I	GGATG	7 cut(s)	280, 821, 1532, 2158, 2332, 2458, 2941
BstH2I	RGCGCY	1 cut(s)	285
BstHHI	GCGC	2 cut(s)	284, 1233
BstMAI	GTCTC	6 cut(s)	241, 756, 773, 2480, 2734, 3031
BstMCI	CGRYCG	1 cut(s)	251
BstNI	CCWGG	7 cut(s)	127, 553, 1058, 1422, 2790, 2886, 2920
BstNSI	RCATGY	5 cut(s)	969, 1777, 1907, 2597, 3022
BstSCI	CCNGG	7 cut(s)	125, 551, 1056, 1420, 2788, 2884, 2918
BstSFI	CTRYAG	2 cut(s)	1359, 1932
BstSLI	GKGCMC	3 cut(s)	1681, 1872, 2260
BstV1I	GCAGC	9 cut(s)	160, 532, 991, 1208, 1908, 2489, 2741, 2762, 2836
BstV2I	GAAGAC	4 cut(s)	958, 1630, 2078, 2987
BstX2I	RGATCY	6 cut(s)	594, 1471, 1654, 1917, 2015, 2564
BstXI	CCANNNNNNTGG	2 cut(s)	1099, 1428
BstYI	RGATCY	6 cut(s)	594, 1471, 1654, 1917, 2015, 2564
BsuI	GTATCC	1 cut(s)	1720
BsuRI	GGCC	6 cut(s)	144, 1116, 1432, 1645, 2806, 2976
BtgI	CCRYGG	1 cut(s)	1457
BtgZI	GCGATG	1 cut(s)	2111
BtsCI	GGATG	7 cut(s)	280, 821, 1532, 2158, 2332, 2458, 2941
BtsI	GCAGTG	3 cut(s)	297, 1356, 2243
BtsIMutI	CAGTG	7 cut(s)	297, 832, 1248, 1356, 2114, 2216, 2243
BveI	ACCTGC	1 cut(s)	3013
CciI	TCATGA	2 cut(s)	1746, 2353
CfoI	GCGC	2 cut(s)	284, 1233
Cfr10I	RCCGGY	2 cut(s)	978, 2073
Cfr13I	GGNCC	6 cut(s)	555, 585, 1418, 1504, 1591, 2974
Csp6I	GTAC	7 cut(s)	568, 1769, 1943, 2186, 2267, 2655, 2838
CspAI	ACCGGT	1 cut(s)	2073
CviQI	GTAC	7 cut(s)	568, 1769, 1943, 2186, 2267, 2655, 2838
DdeI	CTNAG	9 cut(s)	285, 425, 984, 1170, 1659, 1697, 1833, 2270, 2516
DraIII	CACNNNGTG	1 cut(s)	1391
DriI	GACNNNNNGTC	1 cut(s)	1258
EaeI	YGGCCR	4 cut(s)	142, 1114, 1430, 2804
Eam1104I	CTCTTC	3 cut(s)	396, 585, 2686
Eam1105I	GACNNNNNGTC	1 cut(s)	1258
EarI	CTCTTC	3 cut(s)	396, 585, 2686
Eco130I	CCWWGG	3 cut(s)	2319, 2481, 2531
Eco147I	AGGCCT	1 cut(s)	1645
Eco31I	GGTCTC	2 cut(s)	756, 3031
Eco32I	GATATC	2 cut(s)	1576, 2052
Eco47I	GGWCC	5 cut(s)	555, 585, 1418, 1504, 1591
Eco47III	AGCGCT	1 cut(s)	283
Eco57I	CTGAAG	3 cut(s)	1602, 1624, 3120
Eco88I	CYCGRG	2 cut(s)	1521, 2019
EcoO109I	RGGNCCY	1 cut(s)	2974
EcoRI	GAATTC	4 cut(s)	94, 112, 1718, 2494
EcoRII	CCWGG	7 cut(s)	125, 551, 1056, 1420, 2788, 2884, 2918
EcoRV	GATATC	2 cut(s)	1576, 2052
EcoT14I	CCWWGG	3 cut(s)	2319, 2481, 2531
EcoT22I	ATGCAT	1 cut(s)	3020
ErhI	CCWWGG	3 cut(s)	2319, 2481, 2531
Esp3I	CGTCTC	1 cut(s)	241
FalI	AAGNNNNNCTT	2 cut(s)	2994, 3026
FaqI	GGGAC	4 cut(s)	541, 598, 1002, 2416
FbaI	TGATCA	2 cut(s)	1627, 3070
FokI	GGATG	7 cut(s)	287, 808, 1539, 2165, 2339, 2465, 2948
FspBI	CTAG	5 cut(s)	701, 1292, 1685, 1958, 2183
GlaI	GCGC	2 cut(s)	283, 1232
GsaI	CCCAGC	3 cut(s)	30, 1273, 3108
GsuI	CTGGAG	3 cut(s)	109, 977, 2907
HaeII	RGCGCY	1 cut(s)	285
HaeIII	GGCC	6 cut(s)	144, 1116, 1432, 1645, 2806, 2976
HapII	CCGG	4 cut(s)	979, 2074, 2392, 2853
HhaI	GCGC	2 cut(s)	284, 1233
Hin6I	GCGC	2 cut(s)	282, 1231
HinP1I	GCGC	2 cut(s)	282, 1231
HincII	GTYRAC	1 cut(s)	2440
HindII	GTYRAC	1 cut(s)	2440
HindIII	AAGCTT	1 cut(s)	308
HpaII	CCGG	4 cut(s)	979, 2074, 2392, 2853
HphI	GGTGA	9 cut(s)	43, 1072, 1403, 1769, 2558, 2636, 2804, 2876, 3119
Hpy166II	GTNNAC	7 cut(s)	1418, 1507, 1679, 1771, 1870, 2440, 2655
Hpy8I	GTNNAC	7 cut(s)	1418, 1507, 1679, 1771, 1870, 2440, 2655
Hpy99I	CGWCG	2 cut(s)	75, 256
HpyAV	CCTTC	5 cut(s)	514, 698, 1419, 1626, 2628
HpyCH4III	ACNGT	6 cut(s)	838, 1732, 1850, 2266, 2650, 2842
HpyCH4IV	ACGT	1 cut(s)	2660
HpyF3I	CTNAG	9 cut(s)	285, 425, 984, 1170, 1659, 1697, 1833, 2270, 2516
HpySE526I	ACGT	1 cut(s)	2660
HspAI	GCGC	2 cut(s)	282, 1231
KpnI	GGTACC	1 cut(s)	571
Ksp22I	TGATCA	2 cut(s)	1627, 3070
LguI	GCTCTTC	1 cut(s)	396
LmnI	GCTCC	2 cut(s)	1397, 1810
Lsp1109I	GCAGC	9 cut(s)	160, 532, 991, 1208, 1908, 2489, 2741, 2762, 2836
MaeI	CTAG	5 cut(s)	701, 1292, 1685, 1958, 2183
MaeII	ACGT	1 cut(s)	2660
MaeIII	GTNAC	5 cut(s)	262, 968, 1516, 2890, 3125
MfeI	CAATTG	3 cut(s)	1047, 1368, 3134
MflI	RGATCY	6 cut(s)	594, 1471, 1654, 1917, 2015, 2564
MhlI	GDGCHC	5 cut(s)	1681, 1872, 2182, 2260, 2674
MlsI	TGGCCA	4 cut(s)	144, 1116, 1432, 2806
MluNI	TGGCCA	4 cut(s)	144, 1116, 1432, 2806
MlyI	GAGTC	8 cut(s)	220, 323, 377, 423, 467, 928, 1268, 2092
MmeI	TCCRAC	2 cut(s)	60, 501
Mox20I	TGGCCA	4 cut(s)	144, 1116, 1432, 2806
Mph1103I	ATGCAT	1 cut(s)	3020
MroXI	GAANNNNTTC	3 cut(s)	451, 1637, 3006
MscI	TGGCCA	4 cut(s)	144, 1116, 1432, 2806
MseI	TTAA	8 cut(s)	195, 810, 1226, 2148, 2409, 2705, 2717, 2723
MslI	CAYNNNNRTG	7 cut(s)	676, 759, 1392, 1776, 2559, 2603, 2820
Msp20I	TGGCCA	4 cut(s)	144, 1116, 1432, 2806
MspCI	CTTAAG	1 cut(s)	809
MspI	CCGG	4 cut(s)	979, 2074, 2392, 2853
MspR9I	CCNGG	7 cut(s)	127, 553, 1058, 1422, 2790, 2886, 2920
MunI	CAATTG	3 cut(s)	1047, 1368, 3134
Mva1269I	GAATGC	1 cut(s)	2425
MvaI	CCWGG	7 cut(s)	127, 553, 1058, 1422, 2790, 2886, 2920
NmuCI	GTSAC	1 cut(s)	3125
NsiI	ATGCAT	1 cut(s)	3020
NspI	RCATGY	5 cut(s)	969, 1777, 1907, 2597, 3022
PaeI	GCATGC	2 cut(s)	2597, 3022
PaeR7I	CTCGAG	1 cut(s)	1521
PagI	TCATGA	2 cut(s)	1746, 2353
PceI	AGGCCT	1 cut(s)	1645
PciI	ACATGT	1 cut(s)	1773
PciSI	GCTCTTC	1 cut(s)	396
PctI	GAATGC	1 cut(s)	2425
PdmI	GAANNNNTTC	3 cut(s)	451, 1637, 3006
PfeI	GAWTC	6 cut(s)	437, 911, 1558, 1666, 2306, 2856
PflMI	CCANNNNNTGG	3 cut(s)	779, 1388, 2795
PinAI	ACCGGT	1 cut(s)	2073
PleI	GAGTC	8 cut(s)	220, 323, 377, 423, 466, 928, 1267, 2091
PpsI	GAGTC	8 cut(s)	220, 323, 377, 423, 466, 928, 1267, 2091
PscI	ACATGT	1 cut(s)	1773
PshBI	ATTAAT	1 cut(s)	2717
Psp1406I	AACGTT	1 cut(s)	2660
Psp6I	CCWGG	7 cut(s)	125, 551, 1056, 1420, 2788, 2884, 2918
PspFI	CCCAGC	3 cut(s)	26, 1269, 3104
PspGI	CCWGG	7 cut(s)	125, 551, 1056, 1420, 2788, 2884, 2918
PspPI	GGNCC	6 cut(s)	555, 585, 1418, 1504, 1591, 2974
PspXI	VCTCGAGB	1 cut(s)	1521
PstI	CTGCAG	1 cut(s)	1363
PsuI	RGATCY	6 cut(s)	594, 1471, 1654, 1917, 2015, 2564
RsaI	GTAC	7 cut(s)	569, 1770, 1944, 2187, 2268, 2656, 2839
RsaNI	GTAC	7 cut(s)	568, 1769, 1943, 2186, 2267, 2655, 2838
RseI	CAYNNNNRTG	7 cut(s)	676, 759, 1392, 1776, 2559, 2603, 2820
SapI	GCTCTTC	1 cut(s)	396
SaqAI	TTAA	8 cut(s)	195, 810, 1226, 2148, 2409, 2705, 2717, 2723
Sau96I	GGNCC	6 cut(s)	555, 585, 1418, 1504, 1591, 2974
ScaI	AGTACT	1 cut(s)	2268
SchI	GAGTC	8 cut(s)	220, 323, 377, 423, 467, 928, 1268, 2092
ScrFI	CCNGG	7 cut(s)	127, 553, 1058, 1422, 2790, 2886, 2920
SduI	GDGCHC	5 cut(s)	1681, 1872, 2182, 2260, 2674
SfcI	CTRYAG	2 cut(s)	1359, 1932
Sfr274I	CTCGAG	1 cut(s)	1521
SinI	GGWCC	5 cut(s)	555, 585, 1418, 1504, 1591
SlaI	CTCGAG	1 cut(s)	1521
SmiMI	CAYNNNNRTG	7 cut(s)	676, 759, 1392, 1776, 2559, 2603, 2820
SmlI	CTYRAG	2 cut(s)	809, 1521
SmoI	CTYRAG	2 cut(s)	809, 1521
SpeI	ACTAGT	1 cut(s)	2182
SphI	GCATGC	2 cut(s)	2597, 3022
SseBI	AGGCCT	1 cut(s)	1645
SsiI	CCGC	5 cut(s)	247, 295, 656, 1208, 2710
SspI	AATATT	2 cut(s)	193, 1753
SspMI	CTAG	5 cut(s)	701, 1292, 1685, 1958, 2183
StuI	AGGCCT	1 cut(s)	1645
StyD4I	CCNGG	7 cut(s)	125, 551, 1056, 1420, 2788, 2884, 2918
StyI	CCWWGG	3 cut(s)	2319, 2481, 2531
TaaI	ACNGT	6 cut(s)	838, 1732, 1850, 2266, 2650, 2842
TaiI	ACGT	1 cut(s)	2663
TaqI	TCGA	7 cut(s)	239, 432, 623, 1522, 2875, 3013, 3170
TaqII	GACCGA	1 cut(s)	602
TatI	WGTACW	5 cut(s)	1768, 1942, 2185, 2266, 2654
TauI	GCSGC	1 cut(s)	1211
TfiI	GAWTC	6 cut(s)	437, 911, 1558, 1666, 2306, 2856
Tru1I	TTAA	8 cut(s)	195, 810, 1226, 2148, 2409, 2705, 2717, 2723
Tru9I	TTAA	8 cut(s)	195, 810, 1226, 2148, 2409, 2705, 2717, 2723
TscAI	CASTG	7 cut(s)	297, 832, 1255, 1363, 2114, 2223, 2250
TseFI	GTSAC	1 cut(s)	3125
TseI	GCWGC	9 cut(s)	173, 545, 1004, 1196, 1896, 2477, 2754, 2775, 2849
Tsp45I	GTSAC	1 cut(s)	3125
TspGWI	ACGGA	3 cut(s)	223, 1032, 2674
TspRI	CASTG	7 cut(s)	297, 832, 1255, 1363, 2114, 2223, 2250
Van91I	CCANNNNNTGG	3 cut(s)	779, 1388, 2795
Vha464I	CTTAAG	1 cut(s)	809
VneI	GTGCAC	2 cut(s)	1677, 1868
VpaK11BI	GGWCC	5 cut(s)	555, 585, 1418, 1504, 1591
VspI	ATTAAT	1 cut(s)	2717
XapI	RAATTY	9 cut(s)	94, 112, 203, 783, 1718, 1969, 2494, 3143, 3198
XbaI	TCTAGA	1 cut(s)	1957
XceI	RCATGY	5 cut(s)	969, 1777, 1907, 2597, 3022
XhoI	CTCGAG	1 cut(s)	1521
XmnI	GAANNNNTTC	3 cut(s)	451, 1637, 3006
XspI	CTAG	5 cut(s)	701, 1292, 1685, 1958, 2183
ZrmI	AGTACT	1 cut(s)	2268
Zsp2I	ATGCAT	1 cut(s)	3020

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.