Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0009267

Physical Location & Seq

Genomic Coordinates Reverse (-)

15235815 .. 15246849

Gene Structure 11035 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1178100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3246 bp

ATGGACGTAGAAATGGACGCTTCTCCAAGCTTCTTCGACCCCGAAGACCTCACAATCAGAGAGAAGTTTCGTCGATACGGGAAAAGGCACTTGACTTCAAGCATATCGCCCCACCGAGAGAATTCAGCTTCTAAATACAGTGAATTTAGACTACTATATGATGGGCAGAATATCCATAGCCCGACCAATGCTGCACTTCTTCTCGAAAATATTAAACATGAGGCTGAAAGCATTGATGCTGATCACTTGGAAAGAACTTCTTTCTCAAGAAGGAGGTTGCCCATTGATGGTGCCGATATGGATGATGGCGCTGGTTCAGTCCACCATTCAATCAAACTTTTGAAGCATGAGGAGGATTCACTGGCTGATGATGGAGATCCAACCTTTAGCCTTTTTGCATCGCTACTTGATTCTGCTCTTCAAGGGTTGATACCTTTTCCTGACTTGATACTAAGATTTGAAGAAGCCTGCCGAAATGTTTCAGAGTCGATTAGGTATGGTTCCAACATTAGGCATCGTGTTGTAGAGGACAAGTTGATGAGGCAGAAGGCTCAACTCCTGCTCGATGAGGCTGCTTCCTGGTCCCTTCTGTGTGTGACAGTTATTCTTCTTCTTGCAGGGACTGAAGAAATCCCAAAAGAGTTCATCTTGTTGCCCTCAACATCACACTTGGAAGCTTGCCAATTTGTCGTAGAGGACCATACGGCACAATTATGTTTACGCATTGTTCAATGGCTAGAAGGCTTAGCCTCCAAAGCACTTGACTTGGAAAGAAAGGTGAGGGGGTCTCATGTCGGTGCCTGTCTCCCAAGCTCTGGAATTTGGTATCATACTCAATGCTATCTTAAGAAAGGAGCCTCCAGTACAAATACCATTCATCACTTGGATTTTGATGCTCCAACACGTGAACATGCTCAACTACTACCTGATGACAAAAAACAAGATGAATCTCTGTTGGAAGATGTCTGGATTCTTTTAAGAGCTGGAAGACGGGAAGAGGCATGTCACCTTTGCCGGTCTGCAGGACAGCCATGGAGAGCTGCAACTTTGTGCATATTTGGAGGAATTGATGATTTTCCTTCAGTTGAAGCTGTGGTGAAAAACGGAAAGAAGAGAACTTTGCAAGCCATTGAGTTGGAAAGTGGCATTGGCCATCAATGGCATCTGTGGAAATGGGCATCATATTGTGCATCAGAGAAAATAGCTGAGCAAGATGCTGGGAAATATGAAGCAGCAGTGTATGCAGCTCAATGTAGCAATTTAAGGCGCATGCTTCCAATCTGCACTGACTGGGAGTCAGCATGCTGGGCTATGGCGAAATCATGGTTACATGTTCAGGTGGATTTGGAATTGGCTCATTTGGAACCGGGAAGAATGGATCAATTTAAAAGCATTGGAGATGCAATTGATGGAAGTCCTGGACATAGTGACGGAGCTGTTCAGCCTTCAAATGGACCAGGAATTTGGCCACTCCAAGTTTTTAACCAACAACCACGACAACTTTCAGATCTACTCCAGAAACTTCAATCAGGGGAATTGGTTCATGAAAGTGTTACTCGAGGATGCAAGGAGCAGCAACGTCAAATTGAGATGAAACTAATGTTAGGAGATATCCCACAATTGCTGGACCTGATATGGTCATGGATAGCCCCTTCAGAAGATGATAAGAGTTTCTTCAGGCCTCATGGAGATCCTCAGATGATTCGATTTGGTGCTCATCTAGTACTTGTGCTTAGATATTTACTTGATGATGAAAATAAGGATACTTTGAGAGAGAAGATTATGAATGTTGGTGATCTCATTATACACATGTATGCCATGTTTCTCTTTTCCATGCAACATGAGGAGTTGGTGGGTATATATGCTTCTCAACTTGCACGCCACCGTTGCATTGACCTCTTTGTGCACATGATGGAACTGAGGCTGAACAGCAGTGTGCATGTCAAATATAAGATCTTCCTTTCTGCTATGGGGTATTTACAATTTTCTCCGGTGGACAACTCAAAAGGAAGTTTTGAAGAGATTGTTGAGAGGGTTCTGTCAAGATCTCGGGAAATGAAAGTTGGCAAGTATGATAAGTTATCAGATGTTGCAGAGCAGCACCGGCTGCAGAGCCTTCCCAAAGCTATGGTTATCCAGTGGCTATGCTTTACACCCCCCTCCACAGTTACTAATGTCAGGGATGTCAGTACAAAACTTCTTCTACGAGCTTTGACACACAGCAACATATTGTTTCGGGAGTTTGCCCTAGGTTCAATGTGGAGAGTTCCTGCAATGCCCATTGGTGCTCACACATTACTTAGCTTCCTTGCTGAACCTTTAAAGCAACTCTCAGAATCTTCTGATACCGTGGAGGATTACAACGTTTCTCAGAACCTGAAAGAGTTCCACGATTGGAGCGAGTATTATTCTTGTGATGCAAAATATCGCAATTGGCTCAAAATTGAATTAGAGAATGCAGAGGTTCCCCCCCTTGAACTCTCAATGGAGGAAAAACAAAGAGCCGTTTCAGCAGCCAAGGAGACTCTGAATTCATCTCTGTCATTGTTACTGAGAACTGAAAATCCTTGGTTAGCTTCAGCTCAAGATCATTTGTATGAATCTGTGGAACCTGTATTTGTTGAATTGCACACCACCGCAATGCTTTGCTTGCCATCTGGTGAATGTCTGCCTCCAGATGCAACCGTGTGCACTGCATTAATGAGTGCTCTTTACTCTTCAGTGAGCGAGGAAGATGTGTTGCATAGGCAACTAATGATAAATGTCACCATATCCTCAAAGGACAATTACTGTGTTGAGGTGGTGCTTCGCTGCTTGGCAGTGGCAGGCGATGGTCTTGGGTCACAGGAAAACACTGATGGGGGTATTCTTGGTACTGTAATGGCTGCTGGCTTCAAAGGTGAGTTGCCTCGTTTTCAAGCTGGAGTTACCATCGAGATTTCGCAATTAGATGCCTGGTATTCGAGCAAAGAAGGTTCCTTGAAGAGCCCAGCAACATACGTTGTGCTGGGTCTATGTCGTAGGTGCTGTATTCCAGAAGTCATTCTTCGATGCATGCAGGTCTCGCTTTCACTTATAGAGTTGGGTGTTCCACCTGAAAGCCATGATCAGTTGATTGAATTAGTTGCTAGCTCCGAAGCTGGATTTCTTCATTTGTTTAGTCACCAACAACTGCAGGAACTTTTATTGTTTGAGAGGGAATATTCCATAAGCCAAATGGAGCTTGAAGAGGAGCTTTCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000972 GO:0000973 GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006355 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0008104 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016043 GO:0017038 GO:0017056 GO:0019219 GO:0019222 GO:0022607 GO:0031080 GO:0031090 GO:0031323 GO:0031326 GO:0031503 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0034622 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0046931 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051276 GO:0051292 GO:0051641 GO:0051649 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup84_Nup100

Protein Analysis

1082

Amino Acids

121.85

Weight (kDa)

5.29

Isoelectric Point (pI)

51.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nup84_Nup100	PF04121	190 - 864	5.2e-60	Nuclear pore protein 84 / 107

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14120 AT3G14120 AT3G14120
fragaria_vesca	FvH4_6g35170 FvH4_6g35170
malus_domestica	MD09G1178100.v1.1 MD17G1148600.v1.1
prunus_persica	Prupe.3G037400_v2.0.a1 Prupe.3G037400_v2.0.a1
pyrus_communis	pycom09g09650 pycom17g14190
rosa_chinensis	RchiOBHm_Chr2g0146431
rosa_laevigata	RLG00000020200
rosa_multiflora	Rmu_sc0001986.1_g000003 Rmu_sc0030037.1_g000003
rosa_roxburghii	Rroxscaffold_2G00100100
rosa_rugosa	Rorug02G0394300
rosa_samantha	Rh2AG451100 Rh2BG463600 Rh2CG437900 Rh2DG472600
rosa_wichuraiana	Rw2G036820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	3049
AccB1I	GGYRCC	2 cut(s)	290, 797
AccB7I	CCANNNNNTGG	1 cut(s)	815
AciI	CCGC	1 cut(s)	2637
AclI	AACGTT	1 cut(s)	2364
AclWI	GGATC	3 cut(s)	371, 1386, 1685
AcoI	YGGCCR	2 cut(s)	1150, 1466
AcsI	RAATTY	5 cut(s)	121, 143, 819, 1461, 2530
AcuI	CTGAAG	6 cut(s)	645, 1065, 1638, 1660, 2562, 2703
AcvI	CACGTG	1 cut(s)	905
AfaI	GTAC	4 cut(s)	865, 1725, 2191, 2875
AfiI	CCNNNNNNNGG	4 cut(s)	287, 510, 815, 1451
AflII	CTTAAG	1 cut(s)	845
AflIII	ACRYGT	3 cut(s)	902, 1330, 1809
AhdI	GACNNNNNGTC	1 cut(s)	1294
AjnI	CCWGG	4 cut(s)	578, 1417, 1456, 2954
AjuI	GAANNNNNNNTTGG	4 cut(s)	1131, 1163, 2046, 2078
AloI	GAACNNNNNNTCC	2 cut(s)	2548, 2580
Alw21I	GWGCWC	5 cut(s)	1717, 1908, 2290, 2693, 2710
Alw26I	GTCTC	4 cut(s)	792, 809, 2516, 3067
Alw44I	GTGCAC	2 cut(s)	1904, 2689
AlwI	GGATC	3 cut(s)	371, 1386, 1685
AlwNI	CAGNNNCTG	2 cut(s)	623, 2377
Ama87I	CYCGRG	2 cut(s)	1557, 2049
AoxI	GGCC	3 cut(s)	1150, 1466, 1679
ApaLI	GTGCAC	2 cut(s)	1904, 2689
ApoI	RAATTY	5 cut(s)	121, 143, 819, 1461, 2530
ArsI	GACNNNNNNTTYG	2 cut(s)	1446, 1478
AseI	ATTAAT	1 cut(s)	2699
Asp700I	GAANNNNTTC	4 cut(s)	478, 1539, 2384, 3042
AspA2I	CCTAGG	1 cut(s)	2248
AspLEI	GCGC	2 cut(s)	311, 1269
AspS9I	GGNCC	4 cut(s)	582, 697, 1454, 1627
AsuC2I	CCSGG	1 cut(s)	1368
AsuHPI	GGTGA	8 cut(s)	790, 998, 1108, 1805, 2672, 2758, 2912, 3155
AsuNHI	GCTAGC	1 cut(s)	3128
AvaI	CYCGRG	2 cut(s)	1557, 2049
AvaII	GGWCC	4 cut(s)	582, 697, 1454, 1627
AvrII	CCTAGG	1 cut(s)	2248
BaeGI	GKGCMC	2 cut(s)	1908, 2693
BalI	TGGCCA	2 cut(s)	1152, 1468
BanI	GGYRCC	2 cut(s)	290, 797
BanII	GRGCYC	1 cut(s)	2990
BarI	GAAGNNNNNNTAC	2 cut(s)	1849, 1881
BbrPI	CACGTG	1 cut(s)	905
BbsI	GAAGAC	2 cut(s)	51, 994
Bbv12I	GWGCWC	5 cut(s)	1717, 1908, 2290, 2693, 2710
BceAI	ACGGC	2 cut(s)	720, 2489
BcgI	CGANNNNNNTGC	2 cut(s)	554, 588
BciT130I	CCWGG	4 cut(s)	580, 1419, 1458, 2956
BciVI	GTATCC	1 cut(s)	1756
BclI	TGATCA	2 cut(s)	241, 3106
BcnI	CCSGG	1 cut(s)	1368
BcoDI	GTCTC	4 cut(s)	792, 809, 2516, 3067
BfaI	CTAG	4 cut(s)	737, 1721, 2249, 3129
BfmI	CTRYAG	3 cut(s)	1020, 2108, 3173
BfoI	RGCGCY	1 cut(s)	312
BfrI	CTTAAG	1 cut(s)	845
BfuAI	ACCTGC	1 cut(s)	3049
BfuI	GTATCC	1 cut(s)	1756
BglII	AGATCT	3 cut(s)	1507, 1953, 2045
BlnI	CCTAGG	1 cut(s)	2248
BlpI	GCTNAGC	2 cut(s)	745, 1206
BmcAI	AGTACT	1 cut(s)	1725
Bme1390I	CCNGG	5 cut(s)	580, 1368, 1419, 1458, 2956
Bme18I	GGWCC	4 cut(s)	582, 697, 1454, 1627
BmeRI	GACNNNNNGTC	1 cut(s)	1294
BmeT110I	CYCGRG	2 cut(s)	1557, 2049
BmgT120I	GGNCC	4 cut(s)	582, 697, 1454, 1627
BmiI	GGNNCC	9 cut(s)	292, 502, 584, 799, 856, 1365, 2466, 2610, 2977
BmrFI	CCNGG	5 cut(s)	580, 1368, 1419, 1458, 2956
BmrI	ACTGGG	1 cut(s)	1300
BmtI	GCTAGC	1 cut(s)	3132
BmuI	ACTGGG	1 cut(s)	1300
BpiI	GAAGAC	2 cut(s)	51, 994
BplI	GAGNNNNNCTC	2 cut(s)	772, 804
BpmI	CTGGAG	4 cut(s)	844, 1499, 2658, 2943
Bpu1102I	GCTNAGC	2 cut(s)	745, 1206
BpuEI	CTTGAG	2 cut(s)	250, 2568
BpuMI	CCSGG	1 cut(s)	1368
BsaAI	YACGTR	1 cut(s)	905
BsaBI	GATNNNNATC	2 cut(s)	240, 375
BsaI	GGTCTC	2 cut(s)	792, 3067
BsaJI	CCNNGG	5 cut(s)	1031, 2248, 2349, 2517, 2567
BsaWI	WCCGGW	1 cut(s)	1990
Bsc4I	CCNNNNNNNGG	4 cut(s)	287, 510, 815, 1451
Bse118I	RCCGGY	2 cut(s)	1014, 2103
Bse1I	ACTGG	4 cut(s)	366, 861, 1295, 2137
Bse3DI	GCAATG	2 cut(s)	2280, 2646
Bse8I	GATNNNNATC	2 cut(s)	240, 375
BseBI	CCWGG	4 cut(s)	580, 1419, 1458, 2956
BseDI	CCNNGG	5 cut(s)	1031, 2248, 2349, 2517, 2567
BseGI	GGATG	3 cut(s)	307, 1568, 2188
BseJI	GATNNNNATC	2 cut(s)	240, 375
BseLI	CCNNNNNNNGG	4 cut(s)	287, 510, 815, 1451
BseMI	GCAATG	2 cut(s)	2280, 2646
BseMII	CTCAG	6 cut(s)	1197, 1709, 1910, 2346, 2384, 2543
BseNI	ACTGG	4 cut(s)	366, 861, 1295, 2137
BseRI	GAGGAG	3 cut(s)	365, 1859, 3245
BseSI	GKGCMC	2 cut(s)	1908, 2693
BseYI	CCCAGC	4 cut(s)	1217, 1305, 2989, 3007
BsgI	GTGCAG	2 cut(s)	177, 1267
BshFI	GGCC	3 cut(s)	1152, 1468, 1681
BshNI	GGYRCC	2 cut(s)	290, 797
BsiHKAI	GWGCWC	5 cut(s)	1717, 1908, 2290, 2693, 2710
BsiHKCI	CYCGRG	2 cut(s)	1557, 2049
BsiSI	CCGG	4 cut(s)	1015, 1367, 1991, 2104
BslFI	GGGAC	2 cut(s)	568, 634
BslI	CCNNNNNNNGG	4 cut(s)	287, 510, 815, 1451
BsmAI	GTCTC	4 cut(s)	792, 809, 2516, 3067
BsmFI	GGGAC	2 cut(s)	568, 634
BsmI	GAATGC	1 cut(s)	2461
BsnI	GGCC	3 cut(s)	1152, 1468, 1681
Bso31I	GGTCTC	2 cut(s)	792, 3067
BsoBI	CYCGRG	2 cut(s)	1557, 2049
Bsp1286I	GDGCHC	6 cut(s)	1717, 1908, 2290, 2693, 2710, 2990
Bsp1720I	GCTNAGC	2 cut(s)	745, 1206
Bsp19I	CCATGG	1 cut(s)	1031
BspACI	CCGC	1 cut(s)	2637
BspANI	GGCC	3 cut(s)	1152, 1468, 1681
BspCNI	CTCAG	6 cut(s)	1198, 1708, 1911, 2345, 2383, 2544
BspHI	TCATGA	1 cut(s)	1543
BspLI	GGNNCC	9 cut(s)	292, 502, 584, 799, 856, 1365, 2466, 2610, 2977
BspMAI	CTGCAG	3 cut(s)	1024, 2112, 3177
BspMI	ACCTGC	1 cut(s)	3049
BspOI	GCTAGC	1 cut(s)	3132
BspPI	GGATC	3 cut(s)	371, 1386, 1685
BspQI	GCTCTTC	2 cut(s)	423, 2978
BspT107I	GGYRCC	2 cut(s)	290, 797
BspTI	CTTAAG	1 cut(s)	845
BspTNI	GGTCTC	2 cut(s)	792, 3067
BsrDI	GCAATG	2 cut(s)	2280, 2646
BsrFI	RCCGGY	2 cut(s)	1014, 2103
BsrI	ACTGG	4 cut(s)	366, 861, 1295, 2137
BssAI	RCCGGY	2 cut(s)	1014, 2103
BssECI	CCNNGG	5 cut(s)	1031, 2248, 2349, 2517, 2567
BssT1I	CCWWGG	4 cut(s)	1031, 2248, 2517, 2567
Bst2UI	CCWGG	4 cut(s)	580, 1419, 1458, 2956
Bst4CI	ACNGT	8 cut(s)	140, 601, 1886, 2167, 2350, 2686, 2792, 2878
Bst6I	CTCTTC	7 cut(s)	423, 990, 1106, 2013, 2722, 2978, 3222
BstAFI	CTTAAG	1 cut(s)	845
BstAPI	GCANNNNNTGC	2 cut(s)	1241, 2107
BstBAI	YACGTR	1 cut(s)	905
BstDSI	CCRYGG	2 cut(s)	1031, 2349
BstF5I	GGATG	3 cut(s)	307, 1568, 2188
BstH2I	RGCGCY	1 cut(s)	312
BstHHI	GCGC	2 cut(s)	311, 1269
BstMAI	GTCTC	4 cut(s)	792, 809, 2516, 3067
BstMWI	GCNNNNNNNGC	9 cut(s)	755, 1241, 1307, 1887, 2104, 2107, 2510, 2650, 3064
BstNI	CCWGG	4 cut(s)	580, 1419, 1458, 2956
BstNSI	RCATGY	8 cut(s)	914, 1005, 1273, 1305, 1334, 1813, 1943, 3058
BstSCI	CCNGG	5 cut(s)	578, 1366, 1417, 1456, 2954
BstSFI	CTRYAG	3 cut(s)	1020, 2108, 3173
BstSLI	GKGCMC	2 cut(s)	1908, 2693
BstV2I	GAAGAC	2 cut(s)	51, 994
BstX2I	RGATCY	5 cut(s)	376, 1507, 1690, 1953, 2045
BstXI	CCANNNNNNTGG	3 cut(s)	1135, 1464, 2128
BstYI	RGATCY	5 cut(s)	376, 1507, 1690, 1953, 2045
BsuI	GTATCC	1 cut(s)	1756
BsuRI	GGCC	3 cut(s)	1152, 1468, 1681
BtgI	CCRYGG	2 cut(s)	1031, 2349
BtgZI	GCGATG	2 cut(s)	384, 2844
BtsCI	GGATG	3 cut(s)	307, 1568, 2188
BtsI	GCAGTG	4 cut(s)	1242, 1939, 2691, 2826
BveI	ACCTGC	1 cut(s)	3049
CaiI	CAGNNNCTG	2 cut(s)	623, 2377
CciI	TCATGA	1 cut(s)	1543
CfoI	GCGC	2 cut(s)	311, 1269
Cfr10I	RCCGGY	2 cut(s)	1014, 2103
Cfr13I	GGNCC	4 cut(s)	582, 697, 1454, 1627
CseI	GACGC	1 cut(s)	26
Csp6I	GTAC	4 cut(s)	864, 1724, 2190, 2874
CviQI	GTAC	4 cut(s)	864, 1724, 2190, 2874
DraI	TTTAAA	2 cut(s)	1387, 2322
DriI	GACNNNNNGTC	1 cut(s)	1294
EaeI	YGGCCR	2 cut(s)	1150, 1466
Eam1104I	CTCTTC	7 cut(s)	423, 990, 1106, 2013, 2722, 2978, 3222
Eam1105I	GACNNNNNGTC	1 cut(s)	1294
EarI	CTCTTC	7 cut(s)	423, 990, 1106, 2013, 2722, 2978, 3222
Eco130I	CCWWGG	4 cut(s)	1031, 2248, 2517, 2567
Eco147I	AGGCCT	1 cut(s)	1681
Eco24I	GRGCYC	1 cut(s)	2990
Eco31I	GGTCTC	2 cut(s)	792, 3067
Eco32I	GATATC	1 cut(s)	1612
Eco47I	GGWCC	4 cut(s)	582, 697, 1454, 1627
Eco57I	CTGAAG	6 cut(s)	645, 1065, 1638, 1660, 2562, 2703
Eco72I	CACGTG	1 cut(s)	905
Eco88I	CYCGRG	2 cut(s)	1557, 2049
EcoRI	GAATTC	2 cut(s)	121, 2530
EcoRII	CCWGG	4 cut(s)	578, 1417, 1456, 2954
EcoRV	GATATC	1 cut(s)	1612
EcoT14I	CCWWGG	4 cut(s)	1031, 2248, 2517, 2567
EcoT22I	ATGCAT	1 cut(s)	3056
EcoT38I	GRGCYC	1 cut(s)	2990
ErhI	CCWWGG	4 cut(s)	1031, 2248, 2517, 2567
FalI	AAGNNNNNCTT	7 cut(s)	244, 276, 1658, 1690, 3030, 3062, 3219
FaqI	GGGAC	2 cut(s)	568, 634
FbaI	TGATCA	2 cut(s)	241, 3106
FokI	GGATG	3 cut(s)	314, 1575, 2195
FriOI	GRGCYC	1 cut(s)	2990
FspBI	CTAG	4 cut(s)	737, 1721, 2249, 3129
GlaI	GCGC	2 cut(s)	310, 1268
GsaI	CCCAGC	4 cut(s)	1221, 1309, 2993, 3011
GsuI	CTGGAG	4 cut(s)	844, 1499, 2658, 2943
HaeII	RGCGCY	1 cut(s)	312
HaeIII	GGCC	3 cut(s)	1152, 1468, 1681
HapII	CCGG	4 cut(s)	1015, 1367, 1991, 2104
HgaI	GACGC	1 cut(s)	26
HhaI	GCGC	2 cut(s)	311, 1269
Hin6I	GCGC	2 cut(s)	309, 1267
HinP1I	GCGC	2 cut(s)	309, 1267
HindIII	AAGCTT	2 cut(s)	28, 675
HpaII	CCGG	4 cut(s)	1015, 1367, 1991, 2104
HphI	GGTGA	8 cut(s)	790, 998, 1108, 1805, 2672, 2758, 2912, 3155
Hpy166II	GTNNAC	6 cut(s)	322, 719, 908, 1906, 1996, 2691
Hpy8I	GTNNAC	6 cut(s)	322, 719, 908, 1906, 1996, 2691
Hpy99I	CGWCG	1 cut(s)	75
HpyAV	CCTTC	9 cut(s)	264, 541, 596, 734, 1089, 1455, 1662, 2126, 2966
HpyCH4III	ACNGT	8 cut(s)	140, 601, 1886, 2167, 2350, 2686, 2792, 2878
HpyCH4IV	ACGT	5 cut(s)	6, 904, 1579, 2364, 3000
HpyF10VI	GCNNNNNNNGC	9 cut(s)	755, 1241, 1307, 1887, 2104, 2107, 2510, 2650, 3064
HpySE526I	ACGT	5 cut(s)	6, 904, 1579, 2364, 3000
HspAI	GCGC	2 cut(s)	309, 1267
Ksp22I	TGATCA	2 cut(s)	241, 3106
LguI	GCTCTTC	2 cut(s)	423, 2978
LmnI	GCTCC	8 cut(s)	854, 901, 1433, 1570, 2397, 3137, 3220, 3232
MaeI	CTAG	4 cut(s)	737, 1721, 2249, 3129
MaeII	ACGT	5 cut(s)	6, 904, 1579, 2364, 3000
MfeI	CAATTG	3 cut(s)	1404, 1619, 2431
MflI	RGATCY	5 cut(s)	376, 1507, 1690, 1953, 2045
MhlI	GDGCHC	6 cut(s)	1717, 1908, 2290, 2693, 2710, 2990
MlsI	TGGCCA	2 cut(s)	1152, 1468
MluNI	TGGCCA	2 cut(s)	1152, 1468
MlyI	GAGTC	3 cut(s)	494, 1304, 2518
MmeI	TCCRAC	5 cut(s)	404, 528, 923, 936, 1116
Mox20I	TGGCCA	2 cut(s)	1152, 1468
Mph1103I	ATGCAT	1 cut(s)	3056
MroXI	GAANNNNTTC	4 cut(s)	478, 1539, 2384, 3042
MscI	TGGCCA	2 cut(s)	1152, 1468
MseI	TTAA	8 cut(s)	213, 846, 977, 1262, 1386, 1482, 2321, 2699
MslI	CAYNNNNRTG	6 cut(s)	712, 795, 1548, 1812, 2595, 2639
Msp20I	TGGCCA	2 cut(s)	1152, 1468
MspCI	CTTAAG	1 cut(s)	845
MspI	CCGG	4 cut(s)	1015, 1367, 1991, 2104
MspR9I	CCNGG	5 cut(s)	580, 1368, 1419, 1458, 2956
MunI	CAATTG	3 cut(s)	1404, 1619, 2431
Mva1269I	GAATGC	1 cut(s)	2461
MvaI	CCWGG	4 cut(s)	580, 1419, 1458, 2956
MwoI	GCNNNNNNNGC	9 cut(s)	755, 1241, 1307, 1887, 2104, 2107, 2510, 2650, 3064
NciI	CCSGG	1 cut(s)	1368
NcoI	CCATGG	1 cut(s)	1031
NheI	GCTAGC	1 cut(s)	3128
NlaIV	GGNNCC	9 cut(s)	292, 502, 584, 799, 856, 1365, 2466, 2610, 2977
NmuCI	GTSAC	6 cut(s)	595, 1004, 1427, 2764, 2841, 3161
NsiI	ATGCAT	1 cut(s)	3056
NspI	RCATGY	8 cut(s)	914, 1005, 1273, 1305, 1334, 1813, 1943, 3058
PaeI	GCATGC	3 cut(s)	1273, 1305, 3058
PaeR7I	CTCGAG	1 cut(s)	1557
PagI	TCATGA	1 cut(s)	1543
PceI	AGGCCT	1 cut(s)	1681
PciI	ACATGT	2 cut(s)	1330, 1809
PciSI	GCTCTTC	2 cut(s)	423, 2978
PcsI	WCGNNNNNNNCGW	1 cut(s)	2397
PctI	GAATGC	1 cut(s)	2461
PdmI	GAANNNNTTC	4 cut(s)	478, 1539, 2384, 3042
PfeI	GAWTC	7 cut(s)	356, 410, 947, 970, 1702, 2336, 2600
PflMI	CCANNNNNTGG	1 cut(s)	815
PfoI	TCCNGGA	1 cut(s)	1417
PleI	GAGTC	3 cut(s)	493, 1303, 2518
PmaCI	CACGTG	1 cut(s)	905
PmlI	CACGTG	1 cut(s)	905
PpsI	GAGTC	3 cut(s)	493, 1303, 2518
Ppu21I	YACGTR	1 cut(s)	905
PscI	ACATGT	2 cut(s)	1330, 1809
PshBI	ATTAAT	1 cut(s)	2699
Psp1406I	AACGTT	1 cut(s)	2364
Psp6I	CCWGG	4 cut(s)	578, 1417, 1456, 2954
PspCI	CACGTG	1 cut(s)	905
PspFI	CCCAGC	4 cut(s)	1217, 1305, 2989, 3007
PspGI	CCWGG	4 cut(s)	578, 1417, 1456, 2954
PspN4I	GGNNCC	9 cut(s)	292, 502, 584, 799, 856, 1365, 2466, 2610, 2977
PspPI	GGNCC	4 cut(s)	582, 697, 1454, 1627
PspXI	VCTCGAGB	1 cut(s)	1557
PstI	CTGCAG	3 cut(s)	1024, 2112, 3177
PstNI	CAGNNNCTG	2 cut(s)	623, 2377
PsuI	RGATCY	5 cut(s)	376, 1507, 1690, 1953, 2045
RsaI	GTAC	4 cut(s)	865, 1725, 2191, 2875
RsaNI	GTAC	4 cut(s)	864, 1724, 2190, 2874
RseI	CAYNNNNRTG	6 cut(s)	712, 795, 1548, 1812, 2595, 2639
SapI	GCTCTTC	2 cut(s)	423, 2978
SaqAI	TTAA	8 cut(s)	213, 846, 977, 1262, 1386, 1482, 2321, 2699
Sau96I	GGNCC	4 cut(s)	582, 697, 1454, 1627
ScaI	AGTACT	1 cut(s)	1725
SchI	GAGTC	3 cut(s)	494, 1304, 2518
ScrFI	CCNGG	5 cut(s)	580, 1368, 1419, 1458, 2956
SduI	GDGCHC	6 cut(s)	1717, 1908, 2290, 2693, 2710, 2990
SfcI	CTRYAG	3 cut(s)	1020, 2108, 3173
Sfr274I	CTCGAG	1 cut(s)	1557
SinI	GGWCC	4 cut(s)	582, 697, 1454, 1627
SlaI	CTCGAG	1 cut(s)	1557
SmiMI	CAYNNNNRTG	6 cut(s)	712, 795, 1548, 1812, 2595, 2639
SmlI	CTYRAG	4 cut(s)	265, 845, 1557, 2583
SmoI	CTYRAG	4 cut(s)	265, 845, 1557, 2583
SphI	GCATGC	3 cut(s)	1273, 1305, 3058
SseBI	AGGCCT	1 cut(s)	1681
SsiI	CCGC	1 cut(s)	2637
SspI	AATATT	2 cut(s)	211, 3203
SspMI	CTAG	4 cut(s)	737, 1721, 2249, 3129
StuI	AGGCCT	1 cut(s)	1681
StyD4I	CCNGG	5 cut(s)	578, 1366, 1417, 1456, 2954
StyI	CCWWGG	4 cut(s)	1031, 2248, 2517, 2567
TaaI	ACNGT	8 cut(s)	140, 601, 1886, 2167, 2350, 2686, 2792, 2878
TaiI	ACGT	5 cut(s)	9, 907, 1582, 2367, 3003
TatI	WGTACW	3 cut(s)	863, 1723, 2189
TfiI	GAWTC	7 cut(s)	356, 410, 947, 970, 1702, 2336, 2600
Tru1I	TTAA	8 cut(s)	213, 846, 977, 1262, 1386, 1482, 2321, 2699
Tru9I	TTAA	8 cut(s)	213, 846, 977, 1262, 1386, 1482, 2321, 2699
TseFI	GTSAC	6 cut(s)	595, 1004, 1427, 2764, 2841, 3161
Tsp45I	GTSAC	6 cut(s)	595, 1004, 1427, 2764, 2841, 3161
TspGWI	ACGGA	2 cut(s)	1119, 1446
Van91I	CCANNNNNTGG	1 cut(s)	815
Vha464I	CTTAAG	1 cut(s)	845
VneI	GTGCAC	2 cut(s)	1904, 2689
VpaK11BI	GGWCC	4 cut(s)	582, 697, 1454, 1627
VspI	ATTAAT	1 cut(s)	2699
XapI	RAATTY	5 cut(s)	121, 143, 819, 1461, 2530
XceI	RCATGY	8 cut(s)	914, 1005, 1273, 1305, 1334, 1813, 1943, 3058
XcmI	CCANNNNNNNNNTGG	2 cut(s)	880, 3214
XhoI	CTCGAG	1 cut(s)	1557
XmaJI	CCTAGG	1 cut(s)	2248
XmnI	GAANNNNTTC	4 cut(s)	478, 1539, 2384, 3042
XspI	CTAG	4 cut(s)	737, 1721, 2249, 3129
ZrmI	AGTACT	1 cut(s)	1725
Zsp2I	ATGCAT	1 cut(s)	3056

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.