pycom09g09650

Nuclear pore complex protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Reverse (-)
7765521 .. 7769592
4072 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g09650.5

Sequence Viewer

Length: 1461 bp
ATGTTGGTCGATCTCATTATACACATGTATGCCATGTTTCTCTTTTCCATACAACATGAGGAGTTGGTGGGTATATATGCTTCTCAACTTGCACGCCACCGTTGCATTGACCTCTTTGTGCACATGATGGAACTGAGGCTGAACAGCAGTGTGCATGTCAAATATAAGATCTTCCTTTCTGCTATGGGGTATTTACAATTTTCTCCAGTGGACGACTCAAAAGGAAGTTTTGAAGAGATTGTTGAGAGGGTTCTGTCAAGATCTCTGGAAATGAAAGTTGGAAAGTATGATAAGTTATCAGATGTTGCAGAGCAGCACCGGCTGCAGAGCCTTCCCAAAGCTATGGTTATCCAGTGGCTATGCTTTACACCCCCCTCCACAGTTACTAATGTCGGGGATGTCAGTACAAAACTTCTTCTACGATCTTTGACACACAGCAACATATTGTTTCGGGAGTTTGCCCTGGGTTCAATTTGGAGAGTTCCTGCAATGCCCATTGGTGCTCACACATTACTTAGCTTCCTTGCTGAACCTTTAAAGCAACTTTCAGAATCTTCTGATACCGTGGAGGTTTACAACGTTTCTCAGAACCTGAAAGAGTTCCACGATTGGAGCGAGTATTATTCTTGTGATGCAAAATATCGCAACTGGCTCAAAATTGAATTAGAGAATGCAGAGGTGTCCCCCCTTGAACTCTCAATGGAGGAAAAACAAAGAGCCGTTTCAGCAGCCAAGGAGACTCTGAATTCATCTTTGTCATTGTTACTGAGAACTGAAAATCCTTGGTTAGCTTCAGCTCAAGATCATTTGTATGAATCTGTGGAACCTGTATTTGTTGAATTGCACGCCACCGCAATGCTTTGCTTGCCATCTGGTGAATGTCTGCCTCCAGATGCAACCGTGTGCACTACATTAATGAGTGCTCTTTACTCTTCAGTGAGCGAGGAAGATGTGTTGCATAGGCAACTGATGATAAATGTCACCATATCCTCAAAGGACAATTACTGTGTCGAGGTGGTGCTTCGCTGCTTGGCCGTGGCAGGTGATGGTCTTGGGTCACAGGAAAACACTGATGGGGGTATTCTTGGTACTGTAATGGCTGCTGGCTTCAAGGGTGAGTTGCCTCGTTTTCAAGCTGGAGCTACCATCGAGATTTCCCGATTAGATGCCTGGTATTCGAGCAAAGAAGGTTCCTTGGAGAGCCCAGCAACGTACATTGTGCTGGGGCTATGTCGTAGGTGCTGTATTCCAGAAGTCATTCTTCGATGCATGCAGGTCTCGCTTTCGCTTATAGAGTTGGGTGTTCCACCTGAAAGCCATGATCGATTGATTGAATTAGTTGCTAGCTCCGAAGCTGGATTTCTTCATTTGTTTAGTCACCAACAACTGCAGGAACTTTTATTGTTTGAGAGGGAATATTCCATAAGCCAAATGGAGCTTGAAGAGGAGCTTTCTTCTTGA

Protein Analysis

487

Amino Acids

54.57

Weight (kDa)

4.98

Isoelectric Point (pI)

53.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1031
Acc36I ACCTGC 2 cut(s) 1031, 1264
AciI CCGC 1 cut(s) 852
AclI AACGTT 1 cut(s) 579
AcoI YGGCCR 1 cut(s) 1032
AcsI RAATTY 1 cut(s) 745
AcuI CTGAAG 2 cut(s) 777, 918
AfaI GTAC 3 cut(s) 406, 1090, 1214
AflIII ACRYGT 1 cut(s) 24
AgsI TTSAA 9 cut(s) 233, 471, 662, 692, 839, 1111, 1133, 1334, 1442
AjnI CCWGG 2 cut(s) 462, 1169
AjuI GAANNNNNNNTTGG 2 cut(s) 261, 293
AloI GAACNNNNNNTCC 2 cut(s) 763, 795
Alw21I GWGCWC 4 cut(s) 123, 505, 908, 925
Alw26I GTCTC 2 cut(s) 731, 1282
Alw44I GTGCAC 2 cut(s) 119, 904
AlwNI CAGNNNCTG 1 cut(s) 592
AoxI GGCC 1 cut(s) 1032
ApaLI GTGCAC 2 cut(s) 119, 904
ApeKI GCWGC 5 cut(s) 313, 322, 728, 1026, 1100
ApoI RAATTY 1 cut(s) 745
AseI ATTAAT 1 cut(s) 914
Asp700I GAANNNNTTC 2 cut(s) 599, 1257
AsuHPI GGTGA 5 cut(s) 887, 973, 1055, 1127, 1370
AsuNHI GCTAGC 1 cut(s) 1343
BaeGI GKGCMC 2 cut(s) 123, 908
BanII GRGCYC 1 cut(s) 1205
BarI GAAGNNNNNNTAC 2 cut(s) 64, 96
Bbv12I GWGCWC 4 cut(s) 123, 505, 908, 925
BbvI GCAGC 5 cut(s) 309, 325, 740, 1013, 1087
BccI CCATC 5 cut(s) 121, 877, 1040, 1067, 1154
BceAI ACGGC 2 cut(s) 704, 1019
BciT130I CCWGG 2 cut(s) 464, 1171
BcoDI GTCTC 2 cut(s) 731, 1282
BfaI CTAG 1 cut(s) 1344
BfmI CTRYAG 2 cut(s) 323, 1388
BfuAI ACCTGC 2 cut(s) 1031, 1264
BglII AGATCT 2 cut(s) 168, 260
BisI GCNGC 5 cut(s) 314, 323, 729, 1027, 1101
BlsI GCNGC 5 cut(s) 315, 324, 730, 1028, 1102
Bme1390I CCNGG 2 cut(s) 464, 1171
BmiI GGNNCC 2 cut(s) 825, 1192
BmrFI CCNGG 2 cut(s) 464, 1171
BmsI GCATC 4 cut(s) 622, 883, 1156, 1256
BmtI GCTAGC 1 cut(s) 1347
BpmI CTGGAG 3 cut(s) 189, 873, 1158
BpuEI CTTGAG 1 cut(s) 783
Bsa29I ATCGAT 1 cut(s) 1324
BsaI GGTCTC 1 cut(s) 1282
BsaJI CCNNGG 7 cut(s) 462, 463, 564, 732, 782, 1035, 1194
Bse118I RCCGGY 1 cut(s) 318
Bse1I ACTGG 3 cut(s) 206, 352, 653
Bse3DI GCAATG 2 cut(s) 495, 861
BseBI CCWGG 2 cut(s) 464, 1171
BseCI ATCGAT 1 cut(s) 1324
BseDI CCNNGG 7 cut(s) 462, 463, 564, 732, 782, 1035, 1194
BseGI GGATG 1 cut(s) 403
BseMI GCAATG 2 cut(s) 495, 861
BseMII CTCAG 3 cut(s) 125, 599, 758
BseNI ACTGG 3 cut(s) 206, 352, 653
BseRI GAGGAG 2 cut(s) 74, 1460
BseSI GKGCMC 2 cut(s) 123, 908
BseXI GCAGC 5 cut(s) 309, 325, 740, 1013, 1087
BseYI CCCAGC 2 cut(s) 1204, 1222
BshFI GGCC 1 cut(s) 1034
BshVI ATCGAT 1 cut(s) 1324
BsiHKAI GWGCWC 4 cut(s) 123, 505, 908, 925
BsiSI CCGG 1 cut(s) 319
BslFI GGGAC 1 cut(s) 667
BsmAI GTCTC 2 cut(s) 731, 1282
BsmFI GGGAC 1 cut(s) 667
BsmI GAATGC 1 cut(s) 676
BsnI GGCC 1 cut(s) 1034
Bso31I GGTCTC 1 cut(s) 1282
Bsp1286I GDGCHC 5 cut(s) 123, 505, 908, 925, 1205
Bsp143I GATC 6 cut(s) 10, 168, 260, 422, 802, 1321
BspACI CCGC 1 cut(s) 852
BspANI GGCC 1 cut(s) 1034
BspCNI CTCAG 3 cut(s) 126, 598, 759
BspDI ATCGAT 1 cut(s) 1324
BspLI GGNNCC 2 cut(s) 825, 1192
BspMAI CTGCAG 2 cut(s) 327, 1392
BspMI ACCTGC 2 cut(s) 1031, 1264
BspOI GCTAGC 1 cut(s) 1347
BspTNI GGTCTC 1 cut(s) 1282
BsrDI GCAATG 2 cut(s) 495, 861
BsrFI RCCGGY 1 cut(s) 318
BsrI ACTGG 3 cut(s) 206, 352, 653
BssAI RCCGGY 1 cut(s) 318
BssECI CCNNGG 7 cut(s) 462, 463, 564, 732, 782, 1035, 1194
BssMI GATC 6 cut(s) 10, 168, 260, 422, 802, 1321
BssT1I CCWWGG 3 cut(s) 732, 782, 1194
Bst2UI CCWGG 2 cut(s) 464, 1171
Bst4CI ACNGT 6 cut(s) 101, 382, 565, 901, 1007, 1093
Bst6I CTCTTC 3 cut(s) 228, 937, 1437
BstAPI GCANNNNNTGC 1 cut(s) 322
BstC8I GCNNGC 6 cut(s) 94, 846, 866, 1105, 1271, 1345
BstDEI CTNAG 4 cut(s) 134, 515, 585, 767
BstDSI CCRYGG 2 cut(s) 564, 1035
BstF5I GGATG 1 cut(s) 403
BstKTI GATC 6 cut(s) 13, 171, 263, 425, 805, 1324
BstMAI GTCTC 2 cut(s) 731, 1282
BstMBI GATC 6 cut(s) 10, 168, 260, 422, 802, 1321
BstMWI GCNNNNNNNGC 6 cut(s) 102, 319, 322, 725, 865, 1279
BstNI CCWGG 2 cut(s) 464, 1171
BstNSI RCATGY 3 cut(s) 28, 158, 1273
BstSCI CCNGG 2 cut(s) 462, 1169
BstSFI CTRYAG 2 cut(s) 323, 1388
BstSLI GKGCMC 2 cut(s) 123, 908
BstV1I GCAGC 5 cut(s) 309, 325, 740, 1013, 1087
BstX2I RGATCY 2 cut(s) 168, 260
BstXI CCANNNNNNTGG 1 cut(s) 343
BstYI RGATCY 2 cut(s) 168, 260
Bsu15I ATCGAT 1 cut(s) 1324
BsuRI GGCC 1 cut(s) 1034
BsuTUI ATCGAT 1 cut(s) 1324
BtgI CCRYGG 2 cut(s) 564, 1035
BtsCI GGATG 1 cut(s) 403
BtsI GCAGTG 1 cut(s) 154
BtsIMutI CAGTG 5 cut(s) 154, 213, 359, 942, 1068
BveI ACCTGC 2 cut(s) 1031, 1264
Cac8I GCNNGC 6 cut(s) 94, 846, 866, 1105, 1271, 1345
CaiI CAGNNNCTG 1 cut(s) 592
Cfr10I RCCGGY 1 cut(s) 318
ClaI ATCGAT 1 cut(s) 1324
Csp6I GTAC 3 cut(s) 405, 1089, 1213
CviAII CATG 7 cut(s) 25, 34, 56, 124, 155, 1270, 1319
CviQI GTAC 3 cut(s) 405, 1089, 1213
DdeI CTNAG 4 cut(s) 134, 515, 585, 767
DpnI GATC 6 cut(s) 12, 170, 262, 424, 804, 1323
DpnII GATC 6 cut(s) 10, 168, 260, 422, 802, 1321
DraI TTTAAA 1 cut(s) 537
EaeI YGGCCR 1 cut(s) 1032
Eam1104I CTCTTC 3 cut(s) 228, 937, 1437
EarI CTCTTC 3 cut(s) 228, 937, 1437
Eco130I CCWWGG 3 cut(s) 732, 782, 1194
Eco24I GRGCYC 1 cut(s) 1205
Eco31I GGTCTC 1 cut(s) 1282
Eco57I CTGAAG 2 cut(s) 777, 918
EcoRI GAATTC 1 cut(s) 745
EcoRII CCWGG 2 cut(s) 462, 1169
EcoT14I CCWWGG 3 cut(s) 732, 782, 1194
EcoT22I ATGCAT 1 cut(s) 1271
EcoT38I GRGCYC 1 cut(s) 1205
ErhI CCWWGG 3 cut(s) 732, 782, 1194
FaeI CATG 7 cut(s) 28, 37, 59, 127, 158, 1273, 1322
FalI AAGNNNNNCTT 3 cut(s) 1245, 1277, 1434
FaqI GGGAC 1 cut(s) 667
FatI CATG 7 cut(s) 24, 33, 55, 123, 154, 1269, 1318
Fnu4HI GCNGC 5 cut(s) 314, 323, 729, 1027, 1101
FokI GGATG 1 cut(s) 410
FriOI GRGCYC 1 cut(s) 1205
Fsp4HI GCNGC 5 cut(s) 314, 323, 729, 1027, 1101
FspBI CTAG 1 cut(s) 1344
GluI GCNGC 5 cut(s) 314, 323, 729, 1027, 1101
GsaI CCCAGC 2 cut(s) 1208, 1226
GsuI CTGGAG 3 cut(s) 189, 873, 1158
HaeIII GGCC 1 cut(s) 1034
HapII CCGG 1 cut(s) 319
Hin1II CATG 7 cut(s) 28, 37, 59, 127, 158, 1273, 1322
HinfI GANTC 4 cut(s) 215, 551, 739, 815
HpaII CCGG 1 cut(s) 319
HphI GGTGA 5 cut(s) 887, 973, 1055, 1127, 1370
Hpy166II GTNNAC 4 cut(s) 121, 211, 574, 906
Hpy188I TCNGA 6 cut(s) 301, 550, 559, 588, 744, 1351
Hpy188III TCNNGA 9 cut(s) 258, 266, 452, 800, 890, 1150, 1158, 1250, 1458
Hpy8I GTNNAC 4 cut(s) 121, 211, 574, 906
HpyAV CCTTC 2 cut(s) 341, 1181
HpyCH4III ACNGT 6 cut(s) 101, 382, 565, 901, 1007, 1093
HpyCH4IV ACGT 2 cut(s) 579, 1211
HpyF10VI GCNNNNNNNGC 6 cut(s) 102, 319, 322, 725, 865, 1279
HpyF3I CTNAG 4 cut(s) 134, 515, 585, 767
HpySE526I ACGT 2 cut(s) 579, 1211
Hsp92II CATG 7 cut(s) 28, 37, 59, 127, 158, 1273, 1322
Kzo9I GATC 6 cut(s) 10, 168, 260, 422, 802, 1321
LmnI GCTCC 5 cut(s) 612, 1139, 1352, 1435, 1447
Lsp1109I GCAGC 5 cut(s) 309, 325, 740, 1013, 1087
LweI GCATC 4 cut(s) 622, 883, 1156, 1256
MaeI CTAG 1 cut(s) 1344
MaeII ACGT 2 cut(s) 579, 1211
MaeIII GTNAC 5 cut(s) 382, 762, 979, 1056, 1376
MalI GATC 6 cut(s) 12, 170, 262, 424, 804, 1323
MboI GATC 6 cut(s) 10, 168, 260, 422, 802, 1321
MflI RGATCY 2 cut(s) 168, 260
MhlI GDGCHC 5 cut(s) 123, 505, 908, 925, 1205
MluCI AATT 8 cut(s) 197, 471, 657, 662, 745, 839, 1000, 1334
MlyI GAGTC 2 cut(s) 209, 733
MmeI TCCRAC 1 cut(s) 259
Mph1103I ATGCAT 1 cut(s) 1271
MroXI GAANNNNTTC 2 cut(s) 599, 1257
MseI TTAA 2 cut(s) 536, 914
MslI CAYNNNNRTG 3 cut(s) 27, 810, 854
MspI CCGG 1 cut(s) 319
MspR9I CCNGG 2 cut(s) 464, 1171
Mva1269I GAATGC 1 cut(s) 676
MvaI CCWGG 2 cut(s) 464, 1171
MwoI GCNNNNNNNGC 6 cut(s) 102, 319, 322, 725, 865, 1279
NdeII GATC 6 cut(s) 10, 168, 260, 422, 802, 1321
NheI GCTAGC 1 cut(s) 1343
NlaIII CATG 7 cut(s) 28, 37, 59, 127, 158, 1273, 1322
NlaIV GGNNCC 2 cut(s) 825, 1192
NmuCI GTSAC 3 cut(s) 979, 1056, 1376
NsiI ATGCAT 1 cut(s) 1271
NspI RCATGY 3 cut(s) 28, 158, 1273
PaeI GCATGC 1 cut(s) 1273
PaqCI CACCTGC 1 cut(s) 1031
PasI CCCWGGG 1 cut(s) 463
PciI ACATGT 1 cut(s) 24
PcsI WCGNNNNNNNCGW 1 cut(s) 612
PctI GAATGC 1 cut(s) 676
PdmI GAANNNNTTC 2 cut(s) 599, 1257
PfeI GAWTC 2 cut(s) 551, 815
PkrI GCNGC 5 cut(s) 315, 324, 730, 1028, 1102
PleI GAGTC 2 cut(s) 209, 733
PpsI GAGTC 2 cut(s) 209, 733
PscI ACATGT 1 cut(s) 24
PshBI ATTAAT 1 cut(s) 914
Psp1406I AACGTT 1 cut(s) 579
Psp6I CCWGG 2 cut(s) 462, 1169
PspFI CCCAGC 2 cut(s) 1204, 1222
PspGI CCWGG 2 cut(s) 462, 1169
PspN4I GGNNCC 2 cut(s) 825, 1192
PstI CTGCAG 2 cut(s) 327, 1392
PstNI CAGNNNCTG 1 cut(s) 592
PsuI RGATCY 2 cut(s) 168, 260
RsaI GTAC 3 cut(s) 406, 1090, 1214
RsaNI GTAC 3 cut(s) 405, 1089, 1213
RseI CAYNNNNRTG 3 cut(s) 27, 810, 854
SaqAI TTAA 2 cut(s) 536, 914
SatI GCNGC 5 cut(s) 314, 323, 729, 1027, 1101
Sau3AI GATC 6 cut(s) 10, 168, 260, 422, 802, 1321
SchI GAGTC 2 cut(s) 209, 733
ScrFI CCNGG 2 cut(s) 464, 1171
SduI GDGCHC 5 cut(s) 123, 505, 908, 925, 1205
SfaNI GCATC 4 cut(s) 622, 883, 1156, 1256
SfcI CTRYAG 2 cut(s) 323, 1388
SmiMI CAYNNNNRTG 3 cut(s) 27, 810, 854
SmlI CTYRAG 1 cut(s) 798
SmoI CTYRAG 1 cut(s) 798
SphI GCATGC 1 cut(s) 1273
Sse9I AATT 8 cut(s) 197, 471, 657, 662, 745, 839, 1000, 1334
SsiI CCGC 1 cut(s) 852
SspI AATATT 1 cut(s) 1418
SspMI CTAG 1 cut(s) 1344
StyD4I CCNGG 2 cut(s) 462, 1169
StyI CCWWGG 3 cut(s) 732, 782, 1194
TaaI ACNGT 6 cut(s) 101, 382, 565, 901, 1007, 1093
TaiI ACGT 2 cut(s) 582, 1214
TaqI TCGA 6 cut(s) 9, 1011, 1149, 1178, 1264, 1324
TasI AATT 8 cut(s) 197, 471, 657, 662, 745, 839, 1000, 1334
TatI WGTACW 1 cut(s) 404
TfiI GAWTC 2 cut(s) 551, 815
Tru1I TTAA 2 cut(s) 536, 914
Tru9I TTAA 2 cut(s) 536, 914
TscAI CASTG 5 cut(s) 154, 213, 359, 942, 1075
TseFI GTSAC 3 cut(s) 979, 1056, 1376
TseI GCWGC 5 cut(s) 313, 322, 728, 1026, 1100
Tsp45I GTSAC 3 cut(s) 979, 1056, 1376
TspDTI ATGAA 4 cut(s) 287, 738, 828, 1355
TspRI CASTG 5 cut(s) 154, 213, 359, 942, 1075
VneI GTGCAC 2 cut(s) 119, 904
VspI ATTAAT 1 cut(s) 914
XapI RAATTY 1 cut(s) 745
XceI RCATGY 3 cut(s) 28, 158, 1273
XcmI CCANNNNNNNNNTGG 1 cut(s) 1429
XmnI GAANNNNTTC 2 cut(s) 599, 1257
XspI CTAG 1 cut(s) 1344
Zsp2I ATGCAT 1 cut(s) 1271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.