Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009267

Physical Location & Seq

Genomic Coordinates Forward (+)

27791508 .. 27801153

Gene Structure 9646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g35170.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3198 bp

ATGGACTTCGACATGGACGCTTCTCCCAGCTACTTCGACCCCGAAAACCTCTCCACCCGCGAGCAATTCCGCCGCTACGGGAAACGGAGCGTTTCGCCCTACCGAGACGGTTCACCTTCCTCCAGGCTACTCTATGATGCCCAGAACAACATCCACAGCCCTACCAACACTGCACTTCTTCTAGAAGATATCAAACACGAAGCAGACACCACTCCTGCAAAGGCTCGCTCCTTCTTGAAAAGGCGGCCCTCGTTTGATGTTACTGAGGTGGAGGATGGTGTTGAGGCCGGCCGCTCCTCGTTGAAGCTTTGCAAGCATGAGGAGGATGTTCTGGCTGATGATGGAGACACGACGTTTGCTTTGTTTGCATCTCTGCTTGACTCTGCTCTTCAAGGGCTCATGCCTTTTTCGGACCTGATATTGAGACTGGAAGAATCATGCAGAGATGTTTCTGAGTCGATTATGTATGGTTCCAACATACGGCATCGGGTTGTAGAAGATAAGTTGATGAGGCAGAAGGCTCAGCTCCTACTTGACGAGGCTGCATCCTGGTCTCTCCTGTGGTACCTCTTCGGGAAAGGGACCGAAGAGATCCCTAAAGAGCTCATCTTGATTCCCTCAACATCACATTTGGAGGCTTGCCAGTTTGTTGCGGACAATCTTACAGCACAATTATGCCTACGAATTGTACAATGGCTAGAAGGCTTAACTTCGAAAGCACTGGATCTGGAAAGAAAGGTGCGAGGGTCACATGTTGGTGCCTGTCTCCCAAGCTCTGGAATTTGGTTCCATACTCAACGTTATCTTAAGAAACGAACATCCAGTGCAAATACTGTTCAGCACTTGGATTTTGATGCCCCGACACGTGAACATGCGCATCTACTACCTGATGACAGAAAACATGATGAATCTCTTTTGGAAGATGTCTGGACTCTTTTGAGAGCAGGGAGACTGGAGGAGGCATGTAACCTTTGCCGGTCTAAGGGACAGGCATGGAGAGCCGCAACATTATGCATATTTGGAGGTTCTGACCTATCTCCATCAATTGAAGCCCTGGTGAGGAATGGAAAGAACAGAACCTTGCAAGCCATTGAATTGGAAAGTCGCATTGGCCACCAATGGTATCTCTGGAAATGGGCTTCTTATTGTGCATCAGAGAAAATAGCTGAGCAAGATACTGGGAAATATGAAGCAGCAGTCTACGCGGCACAATGTAGCAATTTGAGACGCATGCTTCCAATCTGCACCGACTGGGAGTCGGCATGCTGGACAATAGCAAAGTCATGGCTAGATTTTCAGGTGGATTATGAATTGGCTCATTTACAACCAGAAAGAATGGATCAAATTAAAAGCATTGCAGATGCAATTGATGGAAGTCCAGCACATGGTGATGGATCTGTTCAGACTTCAAGTGGATCAGGAAGCTGGCCACTCCAAGTTTCAAACCAGCAACCACGGCAACTTTCGGATCTCATTCAGAAACTTCATTCAGGGGAATTGGTCCACGAAAATGTTACTCGAGGATGCAAGGAGCCGCAACGACAAATTGAGATGATTCTAATGGTAGGGGATATCCCACGATTGCTGGACCTTATATGGTCATGGATTGCACCTTCAGAAGATGAGAATATCTTCAGGCCTCATGGGGATCCCCAAATGATTCGGTTTGGTGCACATCTAGTGCTTGTGCTTAGGTACTTACTTGATGATGAATTCAAGGATACTTTCAGAGAGAAAATCATGAATGTTGGTGATCTCATTGTACACATGTATGCTATGTTTCTATTTTCCAACCAACATGAGGAGCTGGTGGGTATATATGCTTCTCAGCTTGCACGCCACCGTTGCATTGACCTCTTCGTGCACATGATGGAATTGAGGCTGGACAGCAGTGTGCATGTCAAGTATAAGATCTTCCTCTCTGCCATAGAGTATTTACAATTTTCTCCCTTAGACAATTCAAAAGGAAGTTTTGAAGAAATTGTTGTAAGGGTTTTGTCAAGATCTCGGGAAATCAAAGTTAGTCAATATGATAAGCTATCAGGTGTTGCAGAGCAGCATCGGTTGCACAGTCTTCAAAAAGCGATGGTTATCCAGTGGCTATGTTTTACACCCCCCTCCACCATAAAGAATGTTGATGATGTCAGCCGAAAACTTCTTATACGAGCATTAGTACATAGCAACATATTGTTCAGGGAGTTTTCACTGGTGTCAATGTGGAGAGTTCCTGCAGTGCCGATGGGTGCCCACTCAGTACTTAGTTTTCTGGCTGAACCTCTGAAACAACTTTCAGAATCTTCTAATACCTTGGAGGCTGTCTCTCAAAACCTGAAAGAGTTCCATGACTGGAATGAGTATTATTCATGTGATGCAAAATACCGGAATTGGCTCAAAATTAAATTAGAGAATGCAGAGGTGACCCCAATGGACCTCTCAATGGACGAAAAACAAAGGGCTGTTTCAGCAGCTAAGGAGACTTTGAATTCATCTCTGTCATTGTTACTGAGAAAAGATAATCCTTGGTTAGCTTCTGGTGAAGATAACGTGTATGGATCTGTGGAACCTATATTTCTTGAATTGCATGCCACGGCAATGCTATGCTTGCCTTCTGGTGAATGTCTGCTTCCAGATGCAACCGTGTGTACAACATTGATGAGTGCTCTATACACTTCAGTGAGTGAGGAAGATGTGTTAAACCGCCAATTAATGATAAATGTGTCCATATCATCAAAGGATAATTGCTGTGTAGAAGTTGTGCTTCGCTGCTTGGCAGTTCCAGGTGATGGTCTTGGGCCACAGGAACACGATGATGGTGGTATTCTCGGTACTGTTATGGCTGCCGGCTTCAAAGGTGAGCTACTTCGATTTCAACCTGGAGTTACAATGGACATTTCGCGATTAGATGCCTGGTATTCGAGCAAGGATGGTTCTTTAGAAAGTCCAGCAACATACATTGTGCAGGGTCTTTGTCGTAGGTGCTGTCTTCCAGAAGTCATTCTTCGATGCATGCAGGTCTCACTTTCCCTCATTGAGTTAGGTATTGCACCTGCAAGCCATGATCAGTTGATTGAACTAGTTGCTTGCCGTGAAGCTGGATTTCTTCATTTGTTTAGTCACCAACAATTGCAGGAATTTTTATTGTTTGAGAGGGAATACTCAATAAGCCAAATGGAGGTTCAAGAGGAATTTTCTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000972 GO:0000973 GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006355 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0008104 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016043 GO:0017038 GO:0017056 GO:0019219 GO:0019222 GO:0022607 GO:0031080 GO:0031090 GO:0031323 GO:0031326 GO:0031503 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0034622 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0046931 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051276 GO:0051292 GO:0051641 GO:0051649 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup84_Nup100

Protein Analysis

1066

Amino Acids

120.46

Weight (kDa)

5.35

Isoelectric Point (pI)

48.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nup84_Nup100	PF04121	177 - 848	5.8e-59	Nuclear pore protein 84 / 107

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0009267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14120 AT3G14120 AT3G14120
fragaria_vesca	FvH4_6g35170 FvH4_6g35170
malus_domestica	MD09G1178100.v1.1 MD17G1148600.v1.1
prunus_persica	Prupe.3G037400_v2.0.a1 Prupe.3G037400_v2.0.a1
pyrus_communis	pycom09g09650 pycom17g14190
rosa_chinensis	RchiOBHm_Chr2g0146431
rosa_laevigata	RLG00000020200
rosa_multiflora	Rmu_sc0001986.1_g000003 Rmu_sc0030037.1_g000003
rosa_roxburghii	Rroxscaffold_2G00100100
rosa_rugosa	Rorug02G0394300
rosa_samantha	Rh2AG451100 Rh2BG463600 Rh2CG437900 Rh2DG472600
rosa_wichuraiana	Rw2G036820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	3055
Acc16I	TGCGCA	1 cut(s)	876
Acc36I	ACCTGC	2 cut(s)	3001, 3055
Acc65I	GGTACC	1 cut(s)	564
AccB1I	GGYRCC	3 cut(s)	564, 758, 2243
AccB7I	CCANNNNNTGG	3 cut(s)	776, 1385, 2783
AccBSI	CCGCTC	1 cut(s)	294
AccI	GTMKAC	1 cut(s)	1200
AccII	CGCG	3 cut(s)	60, 1205, 2896
AclI	AACGTT	1 cut(s)	799
AclWI	GGATC	9 cut(s)	586, 732, 1347, 1402, 1423, 1476, 1643, 1656, 2560
AcoI	YGGCCR	3 cut(s)	289, 1111, 1427
AcsI	RAATTY	5 cut(s)	780, 1712, 2482, 3131, 3185
AcuI	CTGAAG	3 cut(s)	1599, 1618, 2655
AcvI	CACGTG	1 cut(s)	866
AdeI	CACNNNGTG	1 cut(s)	1388
AfaI	GTAC	8 cut(s)	566, 690, 1697, 1764, 2175, 2256, 2644, 2827
AfiI	CCNNNNNNNGG	9 cut(s)	480, 776, 982, 1059, 1385, 1801, 2437, 2783, 3172
AflII	CTTAAG	1 cut(s)	806
AflIII	ACRYGT	4 cut(s)	751, 863, 1767, 2544
AhdI	GACNNNNNGTC	1 cut(s)	1255
AhlI	ACTAGT	1 cut(s)	3073
AjnI	CCWGG	6 cut(s)	122, 548, 1053, 2776, 2872, 2906
AjuI	GAANNNNNNNTTGG	4 cut(s)	1092, 1124, 3159, 3191
AleI	CACNNNNGTG	1 cut(s)	2672
Alw21I	GWGCWC	4 cut(s)	606, 1675, 1866, 2662
Alw44I	GTGCAC	2 cut(s)	1671, 1862
AlwI	GGATC	9 cut(s)	586, 732, 1347, 1402, 1423, 1476, 1643, 1656, 2560
Ama87I	CYCGRG	2 cut(s)	1518, 2007
AoxI	GGCC	7 cut(s)	245, 285, 289, 1111, 1427, 1637, 2792
ApaLI	GTGCAC	2 cut(s)	1671, 1862
ApeKI	GCWGC	6 cut(s)	542, 1193, 2056, 2465, 2763, 2837
ApoI	RAATTY	5 cut(s)	780, 1712, 2482, 3131, 3185
ArsI	GACNNNNNNTTYG	4 cut(s)	338, 343, 370, 375
AseI	ATTAAT	1 cut(s)	2705
Asp700I	GAANNNNTTC	3 cut(s)	1631, 2336, 2994
Asp718I	GGTACC	1 cut(s)	564
AspLEI	GCGC	1 cut(s)	877
AspS9I	GGNCC	7 cut(s)	246, 412, 582, 1501, 1588, 2428, 2792
AsuII	TTCGAA	1 cut(s)	713
AvaI	CYCGRG	2 cut(s)	1518, 2007
AvaII	GGWCC	5 cut(s)	412, 582, 1501, 1588, 2428
BaeGI	GKGCMC	3 cut(s)	1675, 1866, 2248
BalI	TGGCCA	2 cut(s)	1113, 1429
BamHI	GGATCC	1 cut(s)	1648
BanI	GGYRCC	3 cut(s)	564, 758, 2243
BanII	GRGCYC	2 cut(s)	399, 606
BarI	GAAGNNNNNNTAC	4 cut(s)	1807, 1839, 1898, 1930
BbrPI	CACGTG	1 cut(s)	866
BbsI	GAAGAC	2 cut(s)	2066, 2975
Bbv12I	GWGCWC	4 cut(s)	606, 1675, 1866, 2662
BbvI	GCAGC	6 cut(s)	529, 1205, 2068, 2477, 2750, 2824
BceAI	ACGGC	4 cut(s)	497, 1472, 2604, 3069
BciT130I	CCWGG	6 cut(s)	124, 550, 1055, 2778, 2874, 2908
BciVI	GTATCC	1 cut(s)	1714
BclI	TGATCA	1 cut(s)	3058
BcuI	ACTAGT	1 cut(s)	3073
BfaI	CTAG	5 cut(s)	182, 698, 1289, 1679, 3074
BfmI	CTRYAG	1 cut(s)	2229
BfrI	CTTAAG	1 cut(s)	806
BfuAI	ACCTGC	2 cut(s)	3001, 3055
BfuI	GTATCC	1 cut(s)	1714
BglII	AGATCT	2 cut(s)	1911, 2003
BlpI	GCTNAGC	2 cut(s)	522, 1167
BmcAI	AGTACT	1 cut(s)	2256
Bme1390I	CCNGG	6 cut(s)	124, 550, 1055, 2778, 2874, 2908
Bme18I	GGWCC	5 cut(s)	412, 582, 1501, 1588, 2428
BmeRI	GACNNNNNGTC	1 cut(s)	1255
BmeT110I	CYCGRG	2 cut(s)	1518, 2007
BmgT120I	GGNCC	7 cut(s)	246, 412, 582, 1501, 1588, 2428, 2792
BmiI	GGNNCC	9 cut(s)	472, 566, 583, 760, 788, 1533, 1650, 2245, 2562
BmrFI	CCNGG	6 cut(s)	124, 550, 1055, 2778, 2874, 2908
BmrI	ACTGGG	2 cut(s)	1188, 1261
BmuI	ACTGGG	2 cut(s)	1188, 1261
BpiI	GAAGAC	2 cut(s)	2066, 2975
BplI	GAGNNNNNCTC	2 cut(s)	2303, 2335
BpmI	CTGGAG	3 cut(s)	106, 974, 2895
Bpu10I	CCTNAGC	2 cut(s)	1691, 2469
Bpu1102I	GCTNAGC	2 cut(s)	522, 1167
Bpu14I	TTCGAA	1 cut(s)	713
BsaAI	YACGTR	1 cut(s)	866
BsaBI	GATNNNNATC	1 cut(s)	2090
BsaI	GGTCTC	2 cut(s)	558, 3019
BsaJI	CCNNGG	5 cut(s)	1053, 1454, 2307, 2519, 2586
BsaWI	WCCGGW	1 cut(s)	2379
Bsc4I	CCNNNNNNNGG	9 cut(s)	480, 776, 982, 1059, 1385, 1801, 2437, 2783, 3172
Bse118I	RCCGGY	3 cut(s)	287, 975, 2840
Bse3DI	GCAATG	2 cut(s)	1353, 2598
Bse8I	GATNNNNATC	1 cut(s)	2090
BseBI	CCWGG	6 cut(s)	124, 550, 1055, 2778, 2874, 2908
BseDI	CCNNGG	5 cut(s)	1053, 1454, 2307, 2519, 2586
BseGI	GGATG	7 cut(s)	150, 280, 331, 545, 818, 1529, 2929
BseJI	GATNNNNATC	1 cut(s)	2090
BseLI	CCNNNNNNNGG	9 cut(s)	480, 776, 982, 1059, 1385, 1801, 2437, 2783, 3172
BseMI	GCAATG	2 cut(s)	1353, 2598
BseMII	CTCAG	7 cut(s)	255, 444, 536, 1158, 1841, 2265, 2495
BseRI	GAGGAG	4 cut(s)	286, 335, 971, 1817
BseSI	GKGCMC	3 cut(s)	1675, 1866, 2248
BseX3I	CGGCCG	1 cut(s)	289
BseXI	GCAGC	6 cut(s)	529, 1205, 2068, 2477, 2750, 2824
BseYI	CCCAGC	1 cut(s)	26
BsgI	GTGCAG	3 cut(s)	156, 1228, 2978
Bsh1236I	CGCG	3 cut(s)	60, 1205, 2896
Bsh1285I	CGRYCG	1 cut(s)	292
BshFI	GGCC	7 cut(s)	247, 287, 291, 1113, 1429, 1639, 2794
BshNI	GGYRCC	3 cut(s)	564, 758, 2243
BsiEI	CGRYCG	1 cut(s)	292
BsiHKAI	GWGCWC	4 cut(s)	606, 1675, 1866, 2662
BsiHKCI	CYCGRG	2 cut(s)	1518, 2007
BsiSI	CCGG	4 cut(s)	288, 976, 2380, 2841
BslFI	GGGAC	2 cut(s)	595, 999
BslI	CCNNNNNNNGG	9 cut(s)	480, 776, 982, 1059, 1385, 1801, 2437, 2783, 3172
BsmBI	CGTCTC	2 cut(s)	99, 1219
BsmFI	GGGAC	2 cut(s)	595, 999
BsmI	GAATGC	1 cut(s)	2413
BsnI	GGCC	7 cut(s)	247, 287, 291, 1113, 1429, 1639, 2794
Bso31I	GGTCTC	2 cut(s)	558, 3019
BsoBI	CYCGRG	2 cut(s)	1518, 2007
Bsp119I	TTCGAA	1 cut(s)	713
Bsp1286I	GDGCHC	6 cut(s)	399, 606, 1675, 1866, 2248, 2662
Bsp1407I	TGTACA	3 cut(s)	688, 1762, 2642
Bsp1720I	GCTNAGC	2 cut(s)	522, 1167
Bsp68I	TCGCGA	1 cut(s)	2896
BspANI	GGCC	7 cut(s)	247, 287, 291, 1113, 1429, 1639, 2794
BspCNI	CTCAG	7 cut(s)	256, 445, 535, 1159, 1840, 2264, 2496
BspFNI	CGCG	3 cut(s)	60, 1205, 2896
BspHI	TCATGA	1 cut(s)	1740
BspLI	GGNNCC	9 cut(s)	472, 566, 583, 760, 788, 1533, 1650, 2245, 2562
BspMAI	CTGCAG	1 cut(s)	2233
BspMI	ACCTGC	2 cut(s)	3001, 3055
BspPI	GGATC	9 cut(s)	586, 732, 1347, 1402, 1423, 1476, 1643, 1656, 2560
BspQI	GCTCTTC	1 cut(s)	393
BspT104I	TTCGAA	1 cut(s)	713
BspT107I	GGYRCC	3 cut(s)	564, 758, 2243
BspTI	CTTAAG	1 cut(s)	806
BspTNI	GGTCTC	2 cut(s)	558, 3019
BsrBI	CCGCTC	1 cut(s)	294
BsrDI	GCAATG	2 cut(s)	1353, 2598
BsrFI	RCCGGY	3 cut(s)	287, 975, 2840
BsrGI	TGTACA	3 cut(s)	688, 1762, 2642
BssAI	RCCGGY	3 cut(s)	287, 975, 2840
BssECI	CCNNGG	5 cut(s)	1053, 1454, 2307, 2519, 2586
BssT1I	CCWWGG	2 cut(s)	2307, 2519
Bst2UI	CCWGG	6 cut(s)	124, 550, 1055, 2778, 2874, 2908
Bst4CI	ACNGT	6 cut(s)	110, 835, 1844, 2072, 2638, 2830
Bst6I	CTCTTC	4 cut(s)	393, 575, 582, 1862
BstAFI	CTTAAG	1 cut(s)	806
BstAPI	GCANNNNNTGC	1 cut(s)	2065
BstAUI	TGTACA	3 cut(s)	688, 1762, 2642
BstBAI	YACGTR	1 cut(s)	866
BstBI	TTCGAA	1 cut(s)	713
BstDSI	CCRYGG	2 cut(s)	1454, 2586
BstEII	GGTNACC	1 cut(s)	2416
BstF5I	GGATG	7 cut(s)	150, 280, 331, 545, 818, 1529, 2929
BstFNI	CGCG	3 cut(s)	60, 1205, 2896
BstHHI	GCGC	1 cut(s)	877
BstMCI	CGRYCG	1 cut(s)	292
BstMWI	GCNNNNNNNGC	9 cut(s)	313, 365, 998, 1202, 1456, 1845, 2065, 2462, 2602
BstNI	CCWGG	6 cut(s)	124, 550, 1055, 2778, 2874, 2908
BstNSI	RCATGY	9 cut(s)	755, 875, 966, 1234, 1266, 1771, 1901, 2585, 3010
BstPI	GGTNACC	1 cut(s)	2416
BstSCI	CCNGG	6 cut(s)	122, 548, 1053, 2776, 2872, 2906
BstSFI	CTRYAG	1 cut(s)	2229
BstSLI	GKGCMC	3 cut(s)	1675, 1866, 2248
BstUI	CGCG	3 cut(s)	60, 1205, 2896
BstV1I	GCAGC	6 cut(s)	529, 1205, 2068, 2477, 2750, 2824
BstV2I	GAAGAC	2 cut(s)	2066, 2975
BstX2I	RGATCY	8 cut(s)	591, 724, 1394, 1468, 1648, 1911, 2003, 2552
BstXI	CCANNNNNNTGG	1 cut(s)	1096
BstYI	RGATCY	8 cut(s)	591, 724, 1394, 1468, 1648, 1911, 2003, 2552
BstZI	CGGCCG	1 cut(s)	289
BsuI	GTATCC	1 cut(s)	1714
BsuRI	GGCC	7 cut(s)	247, 287, 291, 1113, 1429, 1639, 2794
BtgI	CCRYGG	2 cut(s)	1454, 2586
BtgZI	GCGATG	1 cut(s)	2099
BtsCI	GGATG	7 cut(s)	150, 280, 331, 545, 818, 1529, 2929
BtsI	GCAGTG	3 cut(s)	168, 1897, 2238
BtsIMutI	CAGTG	8 cut(s)	168, 719, 829, 1897, 2102, 2204, 2238, 2679
BtuMI	TCGCGA	1 cut(s)	2896
BveI	ACCTGC	2 cut(s)	3001, 3055
CciI	TCATGA	1 cut(s)	1740
CfoI	GCGC	1 cut(s)	877
Cfr10I	RCCGGY	3 cut(s)	287, 975, 2840
Cfr13I	GGNCC	7 cut(s)	246, 412, 582, 1501, 1588, 2428, 2792
CseI	GACGC	2 cut(s)	26, 1236
Csp6I	GTAC	8 cut(s)	565, 689, 1696, 1763, 2174, 2255, 2643, 2826
CviQI	GTAC	8 cut(s)	565, 689, 1696, 1763, 2174, 2255, 2643, 2826
DraIII	CACNNNGTG	1 cut(s)	1388
DriI	GACNNNNNGTC	1 cut(s)	1255
EaeI	YGGCCR	3 cut(s)	289, 1111, 1427
EagI	CGGCCG	1 cut(s)	289
Eam1104I	CTCTTC	4 cut(s)	393, 575, 582, 1862
Eam1105I	GACNNNNNGTC	1 cut(s)	1255
EarI	CTCTTC	4 cut(s)	393, 575, 582, 1862
EciI	GGCGGA	1 cut(s)	59
Ecl136II	GAGCTC	1 cut(s)	604
EclXI	CGGCCG	1 cut(s)	289
Eco130I	CCWWGG	2 cut(s)	2307, 2519
Eco147I	AGGCCT	1 cut(s)	1639
Eco24I	GRGCYC	2 cut(s)	399, 606
Eco31I	GGTCTC	2 cut(s)	558, 3019
Eco32I	GATATC	2 cut(s)	190, 1573
Eco47I	GGWCC	5 cut(s)	412, 582, 1501, 1588, 2428
Eco52I	CGGCCG	1 cut(s)	289
Eco53kI	GAGCTC	1 cut(s)	604
Eco57I	CTGAAG	3 cut(s)	1599, 1618, 2655
Eco72I	CACGTG	1 cut(s)	866
Eco88I	CYCGRG	2 cut(s)	1518, 2007
Eco91I	GGTNACC	1 cut(s)	2416
EcoICRI	GAGCTC	1 cut(s)	604
EcoO65I	GGTNACC	1 cut(s)	2416
EcoRI	GAATTC	2 cut(s)	1712, 2482
EcoRII	CCWGG	6 cut(s)	122, 548, 1053, 2776, 2872, 2906
EcoRV	GATATC	2 cut(s)	190, 1573
EcoT14I	CCWWGG	2 cut(s)	2307, 2519
EcoT22I	ATGCAT	2 cut(s)	1016, 3008
EcoT38I	GRGCYC	2 cut(s)	399, 606
ErhI	CCWWGG	2 cut(s)	2307, 2519
Esp3I	CGTCTC	2 cut(s)	99, 1219
FalI	AAGNNNNNCTT	4 cut(s)	2742, 2774, 2982, 3014
FaqI	GGGAC	2 cut(s)	595, 999
FauI	CCCGC	1 cut(s)	65
FbaI	TGATCA	1 cut(s)	3058
FblI	GTMKAC	1 cut(s)	1200
FokI	GGATG	7 cut(s)	137, 287, 338, 532, 805, 1536, 2936
FriOI	GRGCYC	2 cut(s)	399, 606
FseI	GGCCGGCC	1 cut(s)	291
FspAI	RTGCGCAY	1 cut(s)	876
FspBI	CTAG	5 cut(s)	182, 698, 1289, 1679, 3074
FspI	TGCGCA	1 cut(s)	876
GlaI	GCGC	1 cut(s)	876
GsaI	CCCAGC	1 cut(s)	30
GsuI	CTGGAG	3 cut(s)	106, 974, 2895
HaeIII	GGCC	7 cut(s)	247, 287, 291, 1113, 1429, 1639, 2794
HapII	CCGG	4 cut(s)	288, 976, 2380, 2841
HgaI	GACGC	2 cut(s)	26, 1236
HhaI	GCGC	1 cut(s)	877
Hin6I	GCGC	1 cut(s)	875
HinP1I	GCGC	1 cut(s)	875
HindIII	AAGCTT	1 cut(s)	305
HpaII	CCGG	4 cut(s)	288, 976, 2380, 2841
Hpy166II	GTNNAC	8 cut(s)	113, 869, 1201, 1504, 1673, 1765, 1864, 2643
Hpy8I	GTNNAC	8 cut(s)	113, 869, 1201, 1504, 1673, 1765, 1864, 2643
Hpy99I	CGWCG	1 cut(s)	355
HpyAV	CCTTC	6 cut(s)	126, 241, 511, 695, 1623, 2616
HpyCH4III	ACNGT	6 cut(s)	110, 835, 1844, 2072, 2638, 2830
HpyCH4IV	ACGT	4 cut(s)	353, 799, 865, 2544
HpyF10VI	GCNNNNNNNGC	9 cut(s)	313, 365, 998, 1202, 1456, 1845, 2065, 2462, 2602
HpySE526I	ACGT	4 cut(s)	353, 799, 865, 2544
HspAI	GCGC	1 cut(s)	875
KpnI	GGTACC	1 cut(s)	568
KroI	GCCGGC	2 cut(s)	287, 2840
KroNI	GCCGGC	2 cut(s)	289, 2842
Ksp22I	TGATCA	1 cut(s)	3058
LguI	GCTCTTC	1 cut(s)	393
LmnI	GCTCC	6 cut(s)	87, 233, 299, 531, 1531, 1804
Lsp1109I	GCAGC	6 cut(s)	529, 1205, 2068, 2477, 2750, 2824
MaeI	CTAG	5 cut(s)	182, 698, 1289, 1679, 3074
MaeII	ACGT	4 cut(s)	353, 799, 865, 2544
MaeIII	GTNAC	8 cut(s)	259, 747, 965, 1513, 2416, 2499, 2878, 3113
MbiI	CCGCTC	1 cut(s)	294
MfeI	CAATTG	3 cut(s)	1044, 1365, 3122
MflI	RGATCY	8 cut(s)	591, 724, 1394, 1468, 1648, 1911, 2003, 2552
MhlI	GDGCHC	6 cut(s)	399, 606, 1675, 1866, 2248, 2662
MlsI	TGGCCA	2 cut(s)	1113, 1429
MluNI	TGGCCA	2 cut(s)	1113, 1429
MlyI	GAGTC	4 cut(s)	374, 464, 925, 1265
MmeI	TCCRAC	2 cut(s)	498, 1815
Mox20I	TGGCCA	2 cut(s)	1113, 1429
Mph1103I	ATGCAT	2 cut(s)	1016, 3008
MroNI	GCCGGC	2 cut(s)	287, 2840
MroXI	GAANNNNTTC	3 cut(s)	1631, 2336, 2994
MscI	TGGCCA	2 cut(s)	1113, 1429
MseI	TTAA	6 cut(s)	707, 807, 1347, 2397, 2693, 2705
MslI	CAYNNNNRTG	8 cut(s)	673, 756, 1389, 1509, 1770, 2591, 2672, 2808
Msp20I	TGGCCA	2 cut(s)	1113, 1429
MspCI	CTTAAG	1 cut(s)	806
MspI	CCGG	4 cut(s)	288, 976, 2380, 2841
MspR9I	CCNGG	6 cut(s)	124, 550, 1055, 2778, 2874, 2908
MunI	CAATTG	3 cut(s)	1044, 1365, 3122
Mva1269I	GAATGC	1 cut(s)	2413
MvaI	CCWGG	6 cut(s)	124, 550, 1055, 2778, 2874, 2908
MvnI	CGCG	3 cut(s)	60, 1205, 2896
MwoI	GCNNNNNNNGC	9 cut(s)	313, 365, 998, 1202, 1456, 1845, 2065, 2462, 2602
NaeI	GCCGGC	2 cut(s)	289, 2842
NgoMIV	GCCGGC	2 cut(s)	287, 2840
NlaIV	GGNNCC	9 cut(s)	472, 566, 583, 760, 788, 1533, 1650, 2245, 2562
NmuCI	GTSAC	3 cut(s)	747, 2416, 3113
NruI	TCGCGA	1 cut(s)	2896
NsbI	TGCGCA	1 cut(s)	876
NsiI	ATGCAT	2 cut(s)	1016, 3008
NspI	RCATGY	9 cut(s)	755, 875, 966, 1234, 1266, 1771, 1901, 2585, 3010
NspV	TTCGAA	1 cut(s)	713
OliI	CACNNNNGTG	1 cut(s)	2672
PaeI	GCATGC	4 cut(s)	1234, 1266, 2585, 3010
PaeR7I	CTCGAG	1 cut(s)	1518
PagI	TCATGA	1 cut(s)	1740
PaqCI	CACCTGC	1 cut(s)	3055
PceI	AGGCCT	1 cut(s)	1639
PciI	ACATGT	2 cut(s)	751, 1767
PciSI	GCTCTTC	1 cut(s)	393
PctI	GAATGC	1 cut(s)	2413
PdiI	GCCGGC	2 cut(s)	289, 2842
PdmI	GAANNNNTTC	3 cut(s)	1631, 2336, 2994
PfeI	GAWTC	6 cut(s)	434, 613, 908, 1555, 1660, 2294
PflMI	CCANNNNNTGG	3 cut(s)	776, 1385, 2783
PleI	GAGTC	4 cut(s)	374, 463, 925, 1264
PmaCI	CACGTG	1 cut(s)	866
PmlI	CACGTG	1 cut(s)	866
PpsI	GAGTC	4 cut(s)	374, 463, 925, 1264
Ppu21I	YACGTR	1 cut(s)	866
PscI	ACATGT	2 cut(s)	751, 1767
PshBI	ATTAAT	1 cut(s)	2705
Psp124BI	GAGCTC	1 cut(s)	606
Psp1406I	AACGTT	1 cut(s)	799
Psp6I	CCWGG	6 cut(s)	122, 548, 1053, 2776, 2872, 2906
PspCI	CACGTG	1 cut(s)	866
PspEI	GGTNACC	1 cut(s)	2416
PspFI	CCCAGC	1 cut(s)	26
PspGI	CCWGG	6 cut(s)	122, 548, 1053, 2776, 2872, 2906
PspN4I	GGNNCC	9 cut(s)	472, 566, 583, 760, 788, 1533, 1650, 2245, 2562
PspPI	GGNCC	7 cut(s)	246, 412, 582, 1501, 1588, 2428, 2792
PspXI	VCTCGAGB	1 cut(s)	1518
PstI	CTGCAG	1 cut(s)	2233
PsuI	RGATCY	8 cut(s)	591, 724, 1394, 1468, 1648, 1911, 2003, 2552
RigI	GGCCGGCC	1 cut(s)	291
RruI	TCGCGA	1 cut(s)	2896
RsaI	GTAC	8 cut(s)	566, 690, 1697, 1764, 2175, 2256, 2644, 2827
RsaNI	GTAC	8 cut(s)	565, 689, 1696, 1763, 2174, 2255, 2643, 2826
RseI	CAYNNNNRTG	8 cut(s)	673, 756, 1389, 1509, 1770, 2591, 2672, 2808
SacI	GAGCTC	1 cut(s)	606
SapI	GCTCTTC	1 cut(s)	393
SaqAI	TTAA	6 cut(s)	707, 807, 1347, 2397, 2693, 2705
Sau96I	GGNCC	7 cut(s)	246, 412, 582, 1501, 1588, 2428, 2792
ScaI	AGTACT	1 cut(s)	2256
SchI	GAGTC	4 cut(s)	374, 464, 925, 1265
ScrFI	CCNGG	6 cut(s)	124, 550, 1055, 2778, 2874, 2908
SduI	GDGCHC	6 cut(s)	399, 606, 1675, 1866, 2248, 2662
SfcI	CTRYAG	1 cut(s)	2229
Sfr274I	CTCGAG	1 cut(s)	1518
SfuI	TTCGAA	1 cut(s)	713
SinI	GGWCC	5 cut(s)	412, 582, 1501, 1588, 2428
SlaI	CTCGAG	1 cut(s)	1518
SmiMI	CAYNNNNRTG	8 cut(s)	673, 756, 1389, 1509, 1770, 2591, 2672, 2808
SmlI	CTYRAG	2 cut(s)	806, 1518
SmoI	CTYRAG	2 cut(s)	806, 1518
SpeI	ACTAGT	1 cut(s)	3073
SphI	GCATGC	4 cut(s)	1234, 1266, 2585, 3010
SseBI	AGGCCT	1 cut(s)	1639
SspMI	CTAG	5 cut(s)	182, 698, 1289, 1679, 3074
SstI	GAGCTC	1 cut(s)	606
StuI	AGGCCT	1 cut(s)	1639
StyD4I	CCNGG	6 cut(s)	122, 548, 1053, 2776, 2872, 2906
StyI	CCWWGG	2 cut(s)	2307, 2519
TaaI	ACNGT	6 cut(s)	110, 835, 1844, 2072, 2638, 2830
TaiI	ACGT	4 cut(s)	356, 802, 868, 2547
TaqI	TCGA	8 cut(s)	9, 36, 458, 713, 1519, 2863, 2915, 3001
TaqII	GACCGA	1 cut(s)	599
TatI	WGTACW	5 cut(s)	688, 1762, 2173, 2254, 2642
TauI	GCSGC	6 cut(s)	75, 247, 294, 1004, 1208, 1537
TfiI	GAWTC	6 cut(s)	434, 613, 908, 1555, 1660, 2294
Tru1I	TTAA	6 cut(s)	707, 807, 1347, 2397, 2693, 2705
Tru9I	TTAA	6 cut(s)	707, 807, 1347, 2397, 2693, 2705
TscAI	CASTG	8 cut(s)	175, 726, 829, 1897, 2102, 2211, 2238, 2679
TseFI	GTSAC	3 cut(s)	747, 2416, 3113
TseI	GCWGC	6 cut(s)	542, 1193, 2056, 2465, 2763, 2837
Tsp45I	GTSAC	3 cut(s)	747, 2416, 3113
TspDTI	ATGAA	9 cut(s)	921, 1203, 1323, 1475, 1725, 1757, 2352, 2475, 3092
TspGWI	ACGGA	1 cut(s)	100
TspRI	CASTG	8 cut(s)	175, 726, 829, 1897, 2102, 2211, 2238, 2679
Van91I	CCANNNNNTGG	3 cut(s)	776, 1385, 2783
Vha464I	CTTAAG	1 cut(s)	806
VneI	GTGCAC	2 cut(s)	1671, 1862
VpaK11BI	GGWCC	5 cut(s)	412, 582, 1501, 1588, 2428
VspI	ATTAAT	1 cut(s)	2705
XapI	RAATTY	5 cut(s)	780, 1712, 2482, 3131, 3185
XbaI	TCTAGA	1 cut(s)	181
XceI	RCATGY	9 cut(s)	755, 875, 966, 1234, 1266, 1771, 1901, 2585, 3010
XhoI	CTCGAG	1 cut(s)	1518
XmiI	GTMKAC	1 cut(s)	1200
XmnI	GAANNNNTTC	3 cut(s)	1631, 2336, 2994
XspI	CTAG	5 cut(s)	182, 698, 1289, 1679, 3074
ZrmI	AGTACT	1 cut(s)	2256
Zsp2I	ATGCAT	2 cut(s)	1016, 3008

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.