Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0009267

Physical Location & Seq

Genomic Coordinates Reverse (-)

21966256 .. 21976210

Gene Structure 9955 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00100100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3177 bp

ATGGACACTTCTCCCAGCTACTTCGACCCCGAAAACCTCACCACCAGAGAGCAATTTCGTCGCTACGGGAAAAGGCACCCGAATTCGAGCATTTCGCCCTACCGAGAGAATTCTGGCCAGAGCAATATCCACAGCCCTACTAATGCTGCACTTCTTCTGGAAAATATTAAACAAGAATTTGAAAGCACTCCTGCAAAGACTCGTTCCGTCCCGAAAAGGCGGTCGTCGTTTGATGTTACCGAGGTGGATGATAGCGCTGAGGCAGTTCGATATTCGTTGAAGCTTTGCAAGCACGAGGAGGACTCGCTGGCTGATGATGGAGATACGACTTTTGCTCTGTTTGCATCTCTACTTGACTCTGCTCTTCAAGGGTTGATGCCCTTTTCTGACCTGATACTAAGACTCGAAGAATCATGCAGAAATGTTTCAGAGTCAATTATGTATGGTTCCAACATACGGCATCGGATTGTAGAAGATAAGTTGATGAGGCAGAAGGCTCAACTCCTGCTTGATGAGGCTGCTTCCTGGTCCCTCCTCTGGTACCTCTTTGGAAAAGGGACCGAAGAGATCCCTAAAGAACTCATCTTGTTTCCCTCAACATCACATTTTGAGGCTTGCCAGTTTGTTGCGGGTGATCTTACAGCACAGTTATGCTTACGAATTGTTCAATGGCTAGAAGGCTTGACTTCCAAAGCACTTGATCTGGAAAGAAAGGTGCGAGGGTCTCATGTTGGTGCCTGTCTCCCAAGCTCTGGAATTTGGTTCCATACTCAACGCTATCTTAAGAAAGGAACATCCAGTACAAATACTGTTCATCACTTGGATTTTGATGCCCCGACACGAGAACATGCTCATCTACTACCTGATGACAAAAAACATGATGAATCTCTTTTGGAAGATGTCTGGACTCTTTTGAGAGCAGGAAGACTGGAGGAGGCATGTAACCTTTGCCGGTCTAAGGGACAGGCATGGAGAGCTGCAACCTTGTGCATATTTGGAGGTTCTGACCAATCTCCGTCAATTGAAGCCCTGGTGAGGAATGGAAAGAATAGAACCTTGCAAGCCATTGAATTGGAAAGTCGCATTGGCCACCAATGGTATCTCTGGAAATGGGCTTCTTATTGTGCATCAGAGAAAATAGCTGAGCAAGATGCTGGCAAATATGAAGCAGCAGTCTATGCAGCACAATGTAGCAATTTAAGGCGCATGCTTCCAATCTGCACTGACTGGGAGTCAGCGTGCTGGGCAATAGCAAAGTCATGGCTAGATTTTCAGGTGGATTTGGAATTGGCTCATTTACAACCAGAAAGACCGGATCAAATTACAAGCACTGCAGATGCAATTGATGGAAGTCCAGCACATGGTGATGGAGCTGTTCAGCCTTCAAGTGGACCAGGAAGTTGGCCACTCCAAGTTTCAAACCAGCAACCACGTCAACTTTTAGATCTCATTCAGAAACTTCATTCAGGGGAATTGGTCCACGAAAGCGTTACTCGAGGATGCAAGGAACCACAACGACAAATTGAGATGATTCTAATGTTAGGGGATATCCCAAGATTGCTGGACCTTATATGGTCATGGATTGCACCTTCAGAAGATGATCAGAATGTCTTCAGGCCTCATGGGGATCCTCAGATGATTCGGTTTGGTGCACATCTAGTGCTTGTGCTTAGATACTTACTTGATGATGAATTCAAGGATACTGTCAGAGAGAAAATCATGAATATTGGTGATCTCATTGTACACATGTATGCCATGTTTCTCTTTTCTAACCAACATGAGGAGCTGGTGGGTATATATGCTTCTCAGCTTGCACGCCACCGTTGCATTGACCTCTTTGTGCACATGATGGAATTGAGGCTGGACAGCAGTGTGCATGTCAAATATAAGATCTTCCTCTCTGCTATAGAGTATTTACAATTTTCTCCTCTAGACAATTCAAAAGCAAGTTTTGAAGAAATTGTTGAGAGGGTTTTTTCAAGATCTCGGGAAATCAAAGTTAGTCAATATGCTAAGATATCAGGTGTTGCAGAACAGCACCGATTGCAGATTTTGCAACTTATTTCTGTCTTTTCTAATTTGTTTCCATCCCAGACTTCCTACACTTTCGTATCGCTTTTCCTTGTTTTATTTATTTATTTTCTGTATTTTCTTTGTAGCAATATATTGTTCAGGGAGTTTTCACTGGTTTCAATGTGGAGAGTTCCTGCAGTGCCCATTGGTGCCCACACAGTACTTAGTTTTCTTGCTGAACCTTTGAAGCAACTTTCGGAATCTTCTGATACCTTGGAGGATTTTTCACAAAACCTGAAAGAGTTCCACGACTGGAATGAGTATTATTCTTGTGATGCAAAATACCGGAATTGGCTCAAAATTAAATTAGAGAATGCAGAGGTGTCTCCAATTGACCTCTCAAAGGACGAAAAACAAAGGGCTGTTTCAGCAGCCAAGGAGACTTTGAATTCATCGCTGTCATTGCTACTGAGAAAAGAAAATCCTTGGTTAGCTTCTGGTGAAGATCATGTTGATGGATCTGTGGAACCTACATTTCTTGAATTGCATGCCACAGCAATGCTATGCTTGCCTTCTGGTGAGTGTCTGTTTCCAGATGCAACCGTGTGTACAACATTGATGAGTGCTCTTTACTCTTCCGTGAGTGAGGAAGATGTGTTAAACCGCCAATTAATGTTAAATGTCTCCATATCATCAAAGGATAATTGCTGCGTAGAGGTTGTACTTCGCTGCTTGGCAGTTCCAGGTGATGGTTTTGGGCCACAGGAACATGATGATGGAGGTATTCTTGGTACTGTTATGGCTGCCGGCTTCAAAGGTGAGCTACCTCGATTTCAACCTGGAGTTACAATGGACATTTCCCGATTAGATGCCTGGTATTCAAGCAAGGATGGTTCTTTAGAAAGTCCAGCAACATACATTGTGCAGGGCCTTTGTCGTAGGTGCTGTCTTCCAGAAGTCATTCTTCGATGCATGCAGGTCTCACTCTCGCTCATAGAGTTGGGTATTGCACCTGAAAGCCATGATCAGTTGATTGAATTAGTTGCTTGCCCTGAAGCTGGGTTTCTTCATTTGTTTAGTCACCAACAATTGCAGGAATTTTTATTGTTTGAGAGGGAATACTCGATAAGCCAAATGGAGGTTCAAGAGGAAATTTCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000972 GO:0000973 GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006355 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0008104 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016043 GO:0017038 GO:0017056 GO:0019219 GO:0019222 GO:0022607 GO:0031080 GO:0031090 GO:0031323 GO:0031326 GO:0031503 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0034622 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0046931 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051276 GO:0051292 GO:0051641 GO:0051649 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup84_Nup100

Protein Analysis

1058

Amino Acids

119.69

Weight (kDa)

5.22

Isoelectric Point (pI)

52.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nup84_Nup100	PF04121	169 - 841	8.5e-58	Nuclear pore protein 84 / 107

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0009267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14120 AT3G14120 AT3G14120
fragaria_vesca	FvH4_6g35170 FvH4_6g35170
malus_domestica	MD09G1178100.v1.1 MD17G1148600.v1.1
prunus_persica	Prupe.3G037400_v2.0.a1 Prupe.3G037400_v2.0.a1
pyrus_communis	pycom09g09650 pycom17g14190
rosa_chinensis	RchiOBHm_Chr2g0146431
rosa_laevigata	RLG00000020200
rosa_multiflora	Rmu_sc0001986.1_g000003 Rmu_sc0030037.1_g000003
rosa_roxburghii	Rroxscaffold_2G00100100
rosa_rugosa	Rorug02G0394300
rosa_samantha	Rh2AG451100 Rh2BG463600 Rh2CG437900 Rh2DG472600
rosa_wichuraiana	Rw2G036820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2980
Acc65I	GGTACC	1 cut(s)	540
AccB1I	GGYRCC	4 cut(s)	75, 540, 734, 2222
AccB7I	CCANNNNNTGG	3 cut(s)	752, 1361, 2762
AciI	CCGC	3 cut(s)	220, 629, 2677
AclWI	GGATC	5 cut(s)	562, 1323, 1622, 1635, 2539
AcoI	YGGCCR	3 cut(s)	115, 1087, 1403
AcsI	RAATTY	8 cut(s)	82, 109, 176, 756, 1691, 2461, 3110, 3165
AcuI	CTGAAG	3 cut(s)	1575, 1597, 3087
AdeI	CACNNNGTG	1 cut(s)	1364
AfaI	GTAC	7 cut(s)	542, 802, 1743, 2235, 2623, 2736, 2806
AfeI	AGCGCT	1 cut(s)	256
AflII	CTTAAG	1 cut(s)	782
AflIII	ACRYGT	1 cut(s)	1746
AhdI	GACNNNNNGTC	1 cut(s)	1231
AjiI	CACGTC	1 cut(s)	1433
AjnI	CCWGG	6 cut(s)	524, 1029, 1393, 2755, 2851, 2885
AjuI	GAANNNNNNNTTGG	4 cut(s)	1068, 1100, 3138, 3170
Alw21I	GWGCWC	3 cut(s)	1654, 1845, 2641
Alw26I	GTCTC	6 cut(s)	729, 746, 2403, 2447, 2701, 2998
Alw44I	GTGCAC	2 cut(s)	1650, 1841
AlwI	GGATC	5 cut(s)	562, 1323, 1622, 1635, 2539
Ama87I	CYCGRG	2 cut(s)	1494, 1986
Aor51HI	AGCGCT	1 cut(s)	256
AoxI	GGCC	6 cut(s)	115, 1087, 1403, 1616, 2771, 2941
ApaLI	GTGCAC	2 cut(s)	1650, 1841
ApeKI	GCWGC	9 cut(s)	146, 518, 977, 1169, 1181, 2444, 2721, 2742, 2816
ApoI	RAATTY	8 cut(s)	82, 109, 176, 756, 1691, 2461, 3110, 3165
ArsI	GACNNNNNNTTYG	2 cut(s)	206, 238
AseI	ATTAAT	1 cut(s)	2684
Asp700I	GAANNNNTTC	4 cut(s)	424, 1610, 2315, 2973
Asp718I	GGTACC	1 cut(s)	540
AspLEI	GCGC	2 cut(s)	257, 1206
AspS9I	GGNCC	7 cut(s)	528, 558, 1391, 1477, 1564, 2771, 2941
AvaI	CYCGRG	2 cut(s)	1494, 1986
AvaII	GGWCC	5 cut(s)	528, 558, 1391, 1477, 1564
BaeGI	GKGCMC	4 cut(s)	1654, 1845, 2217, 2227
BaeI	ACNNNNGTAYC	2 cut(s)	2094, 2127
BalI	TGGCCA	3 cut(s)	117, 1089, 1405
BamHI	GGATCC	1 cut(s)	1627
BanI	GGYRCC	4 cut(s)	75, 540, 734, 2222
BarI	GAAGNNNNNNTAC	2 cut(s)	1786, 1818
BauI	CACGAG	2 cut(s)	293, 840
BbsI	GAAGAC	3 cut(s)	931, 1603, 2954
Bbv12I	GWGCWC	3 cut(s)	1654, 1845, 2641
BbvCI	CCTCAGC	1 cut(s)	258
BbvI	GCAGC	9 cut(s)	133, 505, 964, 1181, 1193, 2456, 2708, 2729, 2803
BccI	CCATC	9 cut(s)	311, 1340, 1361, 1843, 2095, 2522, 2756, 2783, 2897
BceAI	ACGGC	1 cut(s)	473
BcgI	CGANNNNNNTGC	2 cut(s)	41, 75
BciT130I	CCWGG	6 cut(s)	526, 1031, 1395, 2757, 2853, 2887
BciVI	GTATCC	1 cut(s)	1693
BclI	TGATCA	2 cut(s)	1600, 3037
BcoDI	GTCTC	6 cut(s)	729, 746, 2403, 2447, 2701, 2998
BfaI	CTAG	4 cut(s)	674, 1265, 1658, 1931
BfmI	CTRYAG	3 cut(s)	1332, 1905, 2208
BfoI	RGCGCY	1 cut(s)	258
BfrI	CTTAAG	1 cut(s)	782
BfuAI	ACCTGC	1 cut(s)	2980
BfuI	GTATCC	1 cut(s)	1693
BglII	AGATCT	3 cut(s)	1444, 1890, 1982
BisI	GCNGC	9 cut(s)	147, 519, 978, 1170, 1182, 2445, 2722, 2743, 2817
BlpI	GCTNAGC	1 cut(s)	1143
BlsI	GCNGC	9 cut(s)	148, 520, 979, 1171, 1183, 2446, 2723, 2744, 2818
BmcAI	AGTACT	1 cut(s)	2235
Bme1390I	CCNGG	6 cut(s)	526, 1031, 1395, 2757, 2853, 2887
Bme18I	GGWCC	5 cut(s)	528, 558, 1391, 1477, 1564
BmeRI	GACNNNNNGTC	1 cut(s)	1231
BmeT110I	CYCGRG	2 cut(s)	1494, 1986
BmgBI	CACGTC	1 cut(s)	1433
BmgT120I	GGNCC	7 cut(s)	528, 558, 1391, 1477, 1564, 2771, 2941
BmrFI	CCNGG	6 cut(s)	526, 1031, 1395, 2757, 2853, 2887
BmrI	ACTGGG	1 cut(s)	1237
BmuI	ACTGGG	1 cut(s)	1237
BpiI	GAAGAC	3 cut(s)	931, 1603, 2954
BplI	GAGNNNNNCTC	2 cut(s)	287, 319
BpmI	CTGGAG	2 cut(s)	950, 2874
Bpu10I	CCTNAGC	1 cut(s)	258
Bpu1102I	GCTNAGC	1 cut(s)	1143
BsaI	GGTCTC	2 cut(s)	729, 2998
BsaJI	CCNNGG	5 cut(s)	240, 1029, 2286, 2448, 2498
BsaWI	WCCGGW	2 cut(s)	1312, 2358
BsaXI	ACNNNNNCTCC	2 cut(s)	1223, 1253
Bse118I	RCCGGY	2 cut(s)	951, 2819
Bse1I	ACTGG	6 cut(s)	619, 798, 933, 1232, 2190, 2330
Bse3DI	GCAATG	2 cut(s)	2474, 2577
BseBI	CCWGG	6 cut(s)	526, 1031, 1395, 2757, 2853, 2887
BseDI	CCNNGG	5 cut(s)	240, 1029, 2286, 2448, 2498
BseGI	GGATG	5 cut(s)	253, 794, 1505, 2087, 2908
BseMI	GCAATG	2 cut(s)	2474, 2577
BseMII	CTCAG	5 cut(s)	249, 1134, 1646, 1820, 2474
BseNI	ACTGG	6 cut(s)	619, 798, 933, 1232, 2190, 2330
BseRI	GAGGAG	5 cut(s)	311, 524, 947, 1796, 1917
BseSI	GKGCMC	4 cut(s)	1654, 1845, 2217, 2227
BseXI	GCAGC	9 cut(s)	133, 505, 964, 1181, 1193, 2456, 2708, 2729, 2803
BseYI	CCCAGC	3 cut(s)	14, 1242, 3071
BsgI	GTGCAG	3 cut(s)	132, 1204, 2957
Bsh1285I	CGRYCG	1 cut(s)	224
BshFI	GGCC	6 cut(s)	117, 1089, 1405, 1618, 2773, 2943
BshNI	GGYRCC	4 cut(s)	75, 540, 734, 2222
BsiEI	CGRYCG	1 cut(s)	224
BsiHKAI	GWGCWC	3 cut(s)	1654, 1845, 2641
BsiHKCI	CYCGRG	2 cut(s)	1494, 1986
BsiSI	CCGG	4 cut(s)	952, 1313, 2359, 2820
BslFI	GGGAC	4 cut(s)	194, 514, 571, 975
BsmAI	GTCTC	6 cut(s)	729, 746, 2403, 2447, 2701, 2998
BsmFI	GGGAC	4 cut(s)	194, 514, 571, 975
BsmI	GAATGC	1 cut(s)	2392
BsnI	GGCC	6 cut(s)	117, 1089, 1405, 1618, 2773, 2943
Bso31I	GGTCTC	2 cut(s)	729, 2998
BsoBI	CYCGRG	2 cut(s)	1494, 1986
Bsp1286I	GDGCHC	5 cut(s)	1654, 1845, 2217, 2227, 2641
Bsp1407I	TGTACA	2 cut(s)	1741, 2621
Bsp1720I	GCTNAGC	1 cut(s)	1143
BspACI	CCGC	3 cut(s)	220, 629, 2677
BspANI	GGCC	6 cut(s)	117, 1089, 1405, 1618, 2773, 2943
BspCNI	CTCAG	5 cut(s)	250, 1135, 1645, 1819, 2475
BspHI	TCATGA	1 cut(s)	1719
BspMAI	CTGCAG	2 cut(s)	1336, 2212
BspMI	ACCTGC	1 cut(s)	2980
BspPI	GGATC	5 cut(s)	562, 1323, 1622, 1635, 2539
BspQI	GCTCTTC	1 cut(s)	369
BspT107I	GGYRCC	4 cut(s)	75, 540, 734, 2222
BspTI	CTTAAG	1 cut(s)	782
BspTNI	GGTCTC	2 cut(s)	729, 2998
BsrDI	GCAATG	2 cut(s)	2474, 2577
BsrFI	RCCGGY	2 cut(s)	951, 2819
BsrGI	TGTACA	2 cut(s)	1741, 2621
BsrI	ACTGG	6 cut(s)	619, 798, 933, 1232, 2190, 2330
BssAI	RCCGGY	2 cut(s)	951, 2819
BssECI	CCNNGG	5 cut(s)	240, 1029, 2286, 2448, 2498
BssSI	CACGAG	2 cut(s)	293, 840
BssT1I	CCWWGG	3 cut(s)	2286, 2448, 2498
Bst2BI	CACGAG	2 cut(s)	293, 840
Bst2UI	CCWGG	6 cut(s)	526, 1031, 1395, 2757, 2853, 2887
Bst4CI	ACNGT	7 cut(s)	648, 811, 1705, 1823, 2233, 2617, 2809
Bst6I	CTCTTC	3 cut(s)	369, 558, 2653
BstAFI	CTTAAG	1 cut(s)	782
BstAPI	GCANNNNNTGC	3 cut(s)	1178, 2044, 2053
BstAUI	TGTACA	2 cut(s)	1741, 2621
BstENI	CCTNNNNNAGG	1 cut(s)	2414
BstF5I	GGATG	5 cut(s)	253, 794, 1505, 2087, 2908
BstH2I	RGCGCY	1 cut(s)	258
BstHHI	GCGC	2 cut(s)	257, 1206
BstMAI	GTCTC	6 cut(s)	729, 746, 2403, 2447, 2701, 2998
BstMCI	CGRYCG	1 cut(s)	224
BstNI	CCWGG	6 cut(s)	526, 1031, 1395, 2757, 2853, 2887
BstNSI	RCATGY	7 cut(s)	851, 942, 1210, 1750, 1880, 2564, 2989
BstSCI	CCNGG	6 cut(s)	524, 1029, 1393, 2755, 2851, 2885
BstSFI	CTRYAG	3 cut(s)	1332, 1905, 2208
BstSLI	GKGCMC	4 cut(s)	1654, 1845, 2217, 2227
BstV1I	GCAGC	9 cut(s)	133, 505, 964, 1181, 1193, 2456, 2708, 2729, 2803
BstV2I	GAAGAC	3 cut(s)	931, 1603, 2954
BstX2I	RGATCY	6 cut(s)	567, 1444, 1627, 1890, 1982, 2531
BstXI	CCANNNNNNTGG	2 cut(s)	1072, 1401
BstYI	RGATCY	6 cut(s)	567, 1444, 1627, 1890, 1982, 2531
BsuI	GTATCC	1 cut(s)	1693
BsuRI	GGCC	6 cut(s)	117, 1089, 1405, 1618, 2773, 2943
BtgZI	GCGATG	1 cut(s)	2451
BtrI	CACGTC	1 cut(s)	1433
BtsCI	GGATG	5 cut(s)	253, 794, 1505, 2087, 2908
BtsI	GCAGTG	3 cut(s)	1329, 1876, 2217
BtsIMutI	CAGTG	5 cut(s)	1221, 1329, 1876, 2183, 2217
BveI	ACCTGC	1 cut(s)	2980
CciI	TCATGA	1 cut(s)	1719
CfoI	GCGC	2 cut(s)	257, 1206
Cfr10I	RCCGGY	2 cut(s)	951, 2819
Cfr13I	GGNCC	7 cut(s)	528, 558, 1391, 1477, 1564, 2771, 2941
Csp6I	GTAC	7 cut(s)	541, 801, 1742, 2234, 2622, 2735, 2805
CviQI	GTAC	7 cut(s)	541, 801, 1742, 2234, 2622, 2735, 2805
DraIII	CACNNNGTG	1 cut(s)	1364
DriI	GACNNNNNGTC	1 cut(s)	1231
EaeI	YGGCCR	3 cut(s)	115, 1087, 1403
Eam1104I	CTCTTC	3 cut(s)	369, 558, 2653
Eam1105I	GACNNNNNGTC	1 cut(s)	1231
EarI	CTCTTC	3 cut(s)	369, 558, 2653
Eco130I	CCWWGG	3 cut(s)	2286, 2448, 2498
Eco147I	AGGCCT	1 cut(s)	1618
Eco31I	GGTCTC	2 cut(s)	729, 2998
Eco32I	GATATC	2 cut(s)	1549, 2019
Eco47I	GGWCC	5 cut(s)	528, 558, 1391, 1477, 1564
Eco47III	AGCGCT	1 cut(s)	256
Eco57I	CTGAAG	3 cut(s)	1575, 1597, 3087
Eco88I	CYCGRG	2 cut(s)	1494, 1986
EcoNI	CCTNNNNNAGG	1 cut(s)	2414
EcoO109I	RGGNCCY	1 cut(s)	2941
EcoRI	GAATTC	4 cut(s)	82, 109, 1691, 2461
EcoRII	CCWGG	6 cut(s)	524, 1029, 1393, 2755, 2851, 2885
EcoRV	GATATC	2 cut(s)	1549, 2019
EcoT14I	CCWWGG	3 cut(s)	2286, 2448, 2498
EcoT22I	ATGCAT	1 cut(s)	2987
ErhI	CCWWGG	3 cut(s)	2286, 2448, 2498
FalI	AAGNNNNNCTT	2 cut(s)	2961, 2993
FaqI	GGGAC	4 cut(s)	194, 514, 571, 975
FauI	CCCGC	1 cut(s)	622
FbaI	TGATCA	2 cut(s)	1600, 3037
Fnu4HI	GCNGC	9 cut(s)	147, 519, 978, 1170, 1182, 2445, 2722, 2743, 2817
FokI	GGATG	5 cut(s)	260, 781, 1512, 2074, 2915
Fsp4HI	GCNGC	9 cut(s)	147, 519, 978, 1170, 1182, 2445, 2722, 2743, 2817
FspBI	CTAG	4 cut(s)	674, 1265, 1658, 1931
GlaI	GCGC	2 cut(s)	256, 1205
GluI	GCNGC	9 cut(s)	147, 519, 978, 1170, 1182, 2445, 2722, 2743, 2817
GsaI	CCCAGC	3 cut(s)	18, 1246, 3075
GsuI	CTGGAG	2 cut(s)	950, 2874
HaeII	RGCGCY	1 cut(s)	258
HaeIII	GGCC	6 cut(s)	117, 1089, 1405, 1618, 2773, 2943
HapII	CCGG	4 cut(s)	952, 1313, 2359, 2820
HhaI	GCGC	2 cut(s)	257, 1206
Hin6I	GCGC	2 cut(s)	255, 1204
HinP1I	GCGC	2 cut(s)	255, 1204
HincII	GTYRAC	1 cut(s)	1436
HindII	GTYRAC	1 cut(s)	1436
HindIII	AAGCTT	1 cut(s)	281
HpaII	CCGG	4 cut(s)	952, 1313, 2359, 2820
Hpy166II	GTNNAC	7 cut(s)	1391, 1436, 1480, 1652, 1744, 1843, 2622
Hpy8I	GTNNAC	7 cut(s)	1391, 1436, 1480, 1652, 1744, 1843, 2622
Hpy99I	CGWCG	2 cut(s)	63, 229
HpyAV	CCTTC	5 cut(s)	487, 671, 1392, 1599, 2595
HpyCH4III	ACNGT	7 cut(s)	648, 811, 1705, 1823, 2233, 2617, 2809
HpyCH4IV	ACGT	1 cut(s)	1432
HpySE526I	ACGT	1 cut(s)	1432
HspAI	GCGC	2 cut(s)	255, 1204
KpnI	GGTACC	1 cut(s)	544
KroI	GCCGGC	1 cut(s)	2819
KroNI	GCCGGC	1 cut(s)	2821
Ksp22I	TGATCA	2 cut(s)	1600, 3037
LguI	GCTCTTC	1 cut(s)	369
LmnI	GCTCC	2 cut(s)	1370, 1783
Lsp1109I	GCAGC	9 cut(s)	133, 505, 964, 1181, 1193, 2456, 2708, 2729, 2803
MaeI	CTAG	4 cut(s)	674, 1265, 1658, 1931
MaeII	ACGT	1 cut(s)	1432
MaeIII	GTNAC	5 cut(s)	235, 941, 1489, 2857, 3092
MfeI	CAATTG	4 cut(s)	1020, 1341, 2403, 3101
MflI	RGATCY	6 cut(s)	567, 1444, 1627, 1890, 1982, 2531
MhlI	GDGCHC	5 cut(s)	1654, 1845, 2217, 2227, 2641
MlsI	TGGCCA	3 cut(s)	117, 1089, 1405
MluNI	TGGCCA	3 cut(s)	117, 1089, 1405
MlyI	GAGTC	7 cut(s)	193, 296, 350, 396, 440, 901, 1241
MmeI	TCCRAC	1 cut(s)	474
Mox20I	TGGCCA	3 cut(s)	117, 1089, 1405
Mph1103I	ATGCAT	1 cut(s)	2987
MroNI	GCCGGC	1 cut(s)	2819
MroXI	GAANNNNTTC	4 cut(s)	424, 1610, 2315, 2973
MscI	TGGCCA	3 cut(s)	117, 1089, 1405
MseI	TTAA	7 cut(s)	168, 783, 1199, 2376, 2672, 2684, 2690
MslI	CAYNNNNRTG	7 cut(s)	649, 732, 1365, 1749, 2526, 2570, 2787
Msp20I	TGGCCA	3 cut(s)	117, 1089, 1405
MspCI	CTTAAG	1 cut(s)	782
MspI	CCGG	4 cut(s)	952, 1313, 2359, 2820
MspR9I	CCNGG	6 cut(s)	526, 1031, 1395, 2757, 2853, 2887
MunI	CAATTG	4 cut(s)	1020, 1341, 2403, 3101
Mva1269I	GAATGC	1 cut(s)	2392
MvaI	CCWGG	6 cut(s)	526, 1031, 1395, 2757, 2853, 2887
NaeI	GCCGGC	1 cut(s)	2821
NgoMIV	GCCGGC	1 cut(s)	2819
NmuCI	GTSAC	1 cut(s)	3092
NsiI	ATGCAT	1 cut(s)	2987
NspI	RCATGY	7 cut(s)	851, 942, 1210, 1750, 1880, 2564, 2989
PaeI	GCATGC	3 cut(s)	1210, 2564, 2989
PaeR7I	CTCGAG	1 cut(s)	1494
PagI	TCATGA	1 cut(s)	1719
PceI	AGGCCT	1 cut(s)	1618
PciI	ACATGT	1 cut(s)	1746
PciSI	GCTCTTC	1 cut(s)	369
PctI	GAATGC	1 cut(s)	2392
PdiI	GCCGGC	1 cut(s)	2821
PdmI	GAANNNNTTC	4 cut(s)	424, 1610, 2315, 2973
PfeI	GAWTC	5 cut(s)	410, 884, 1531, 1639, 2273
PflMI	CCANNNNNTGG	3 cut(s)	752, 1361, 2762
PkrI	GCNGC	9 cut(s)	148, 520, 979, 1171, 1183, 2446, 2723, 2744, 2818
PleI	GAGTC	7 cut(s)	193, 296, 350, 396, 439, 901, 1240
PpsI	GAGTC	7 cut(s)	193, 296, 350, 396, 439, 901, 1240
PscI	ACATGT	1 cut(s)	1746
PshBI	ATTAAT	1 cut(s)	2684
Psp6I	CCWGG	6 cut(s)	524, 1029, 1393, 2755, 2851, 2885
PspFI	CCCAGC	3 cut(s)	14, 1242, 3071
PspGI	CCWGG	6 cut(s)	524, 1029, 1393, 2755, 2851, 2885
PspPI	GGNCC	7 cut(s)	528, 558, 1391, 1477, 1564, 2771, 2941
PspXI	VCTCGAGB	1 cut(s)	1494
PsrI	GAACNNNNNNTAC	2 cut(s)	784, 816
PstI	CTGCAG	2 cut(s)	1336, 2212
PsuI	RGATCY	6 cut(s)	567, 1444, 1627, 1890, 1982, 2531
RsaI	GTAC	7 cut(s)	542, 802, 1743, 2235, 2623, 2736, 2806
RsaNI	GTAC	7 cut(s)	541, 801, 1742, 2234, 2622, 2735, 2805
RseI	CAYNNNNRTG	7 cut(s)	649, 732, 1365, 1749, 2526, 2570, 2787
SapI	GCTCTTC	1 cut(s)	369
SaqAI	TTAA	7 cut(s)	168, 783, 1199, 2376, 2672, 2684, 2690
SatI	GCNGC	9 cut(s)	147, 519, 978, 1170, 1182, 2445, 2722, 2743, 2817
Sau96I	GGNCC	7 cut(s)	528, 558, 1391, 1477, 1564, 2771, 2941
ScaI	AGTACT	1 cut(s)	2235
SchI	GAGTC	7 cut(s)	193, 296, 350, 396, 440, 901, 1241
ScrFI	CCNGG	6 cut(s)	526, 1031, 1395, 2757, 2853, 2887
SduI	GDGCHC	5 cut(s)	1654, 1845, 2217, 2227, 2641
SfcI	CTRYAG	3 cut(s)	1332, 1905, 2208
Sfr274I	CTCGAG	1 cut(s)	1494
SinI	GGWCC	5 cut(s)	528, 558, 1391, 1477, 1564
SlaI	CTCGAG	1 cut(s)	1494
SmiMI	CAYNNNNRTG	7 cut(s)	649, 732, 1365, 1749, 2526, 2570, 2787
SmlI	CTYRAG	2 cut(s)	782, 1494
SmoI	CTYRAG	2 cut(s)	782, 1494
SphI	GCATGC	3 cut(s)	1210, 2564, 2989
SseBI	AGGCCT	1 cut(s)	1618
SsiI	CCGC	3 cut(s)	220, 629, 2677
SspI	AATATT	2 cut(s)	166, 1726
SspMI	CTAG	4 cut(s)	674, 1265, 1658, 1931
StuI	AGGCCT	1 cut(s)	1618
StyD4I	CCNGG	6 cut(s)	524, 1029, 1393, 2755, 2851, 2885
StyI	CCWWGG	3 cut(s)	2286, 2448, 2498
TaaI	ACNGT	7 cut(s)	648, 811, 1705, 1823, 2233, 2617, 2809
TaiI	ACGT	1 cut(s)	1435
TaqI	TCGA	8 cut(s)	24, 86, 268, 405, 1495, 2842, 2980, 3137
TaqII	GACCGA	1 cut(s)	575
TatI	WGTACW	5 cut(s)	800, 1741, 2233, 2621, 2734
TfiI	GAWTC	5 cut(s)	410, 884, 1531, 1639, 2273
Tru1I	TTAA	7 cut(s)	168, 783, 1199, 2376, 2672, 2684, 2690
Tru9I	TTAA	7 cut(s)	168, 783, 1199, 2376, 2672, 2684, 2690
TscAI	CASTG	5 cut(s)	1228, 1336, 1876, 2190, 2217
TseFI	GTSAC	1 cut(s)	3092
TseI	GCWGC	9 cut(s)	146, 518, 977, 1169, 1181, 2444, 2721, 2742, 2816
Tsp45I	GTSAC	1 cut(s)	3092
TspDTI	ATGAA	8 cut(s)	803, 897, 1179, 1451, 1704, 1736, 2454, 3071
TspGWI	ACGGA	3 cut(s)	196, 1005, 2641
TspRI	CASTG	5 cut(s)	1228, 1336, 1876, 2190, 2217
Van91I	CCANNNNNTGG	3 cut(s)	752, 1361, 2762
Vha464I	CTTAAG	1 cut(s)	782
VneI	GTGCAC	2 cut(s)	1650, 1841
VpaK11BI	GGWCC	5 cut(s)	528, 558, 1391, 1477, 1564
VspI	ATTAAT	1 cut(s)	2684
XagI	CCTNNNNNAGG	1 cut(s)	2414
XapI	RAATTY	8 cut(s)	82, 109, 176, 756, 1691, 2461, 3110, 3165
XbaI	TCTAGA	1 cut(s)	1930
XceI	RCATGY	7 cut(s)	851, 942, 1210, 1750, 1880, 2564, 2989
XhoI	CTCGAG	1 cut(s)	1494
XmnI	GAANNNNTTC	4 cut(s)	424, 1610, 2315, 2973
XspI	CTAG	4 cut(s)	674, 1265, 1658, 1931
ZrmI	AGTACT	1 cut(s)	2235
Zsp2I	ATGCAT	1 cut(s)	2987

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.