Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0009267

Physical Location & Seq

Genomic Coordinates Forward (+)

13573595 .. 13584264

Gene Structure 10670 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1148600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3219 bp

ATGGACGTAGAAATGGACGCTTCTCCAAGCTTCTTCGACCCCGAGGACCTCACAATCAGAGAGAAGTTTCGTCGATACGGGAAAAGGCACTTGACTTCAAGCATGTCGCCCCACCAAGAGAATTCAGCTTCTAAATACAGTGAATCTAGGCTACTATACGACGGGCAGAATTTACATAGCCCGACCAATGCTGCACTTCTTCTCGAAAATATTAAACAAGAAGTTGAAAGCATTGATGCTGATCACTTGGAAAGAACTTCTTTCTTAAGAAGGAGGTCGCCCATTGATGGCACAGATATGGATGATGGTGCTGGGTCAGTCCACCATTCAATCAAACTTTTCAAGAATGAGGAGCATTCACTGGCTGATGATGGAGATCCAACCTTTAGCCTTTTTGCATCTCTACTTGATTCTGCTCTTCAAGGGTTGATGCCTTTTCCTGACCTGATACTAAGATTTGAAGAATCCTGCCGAAATGTTTCAGAGTCGATTAGGTATGGTTCCAACATAAGGCATCGTGTTGTAGAGGACAAGTTGATGAGGCAGAAGGCTCAACTCCTGCTTGATGAGGCTGCTTCTTGGTCCCTTTTGTGGTTTATTCAGCTATATACCCTGAGTTGTGTCTATTTTGTGGTTGGGACTGAAGAGATCCCTAAAGAGTTCATCTTGTTGCCCTCAACATCACATTTGGAGGCTTGCCAATTTGTCGTAGAGGACCATACAGCACAATTATGTCTACGCATTGTTCAATGGCTAGAAGGCTTAGCCTCCAAAGCACTTGACTTGGAAAGAAAGGTGCGGGGGTCTCATGTTGGCGCCTGTCTCCCAAGCTCTGGAATTTGGTATCATACTCAATGCTATCTTAAGAAAGGAGCCTCCAGTACAAATACCGTTCATCACCTGGATTTTGATGCTCCAACACGTGAACATGCTCAACTTCTACCTGATGACAAAAAACAAGATGAATCTCTGTTGGAAGATGTCTGGACTCTTTTAAGAGCTGGAAGACGGGAAGAGGCATGTCACCTTTGCCGGTCTGCGGGACAGCCATGGAGAGCTGCAACTTTGTGCATATTTGGAGGAATTGATGAGTTTCCGTCAGTTGAAGCTGTGGTGAAAAATGGAAAGAAGAGAACTTTGCAAGCCATTGAGTTAGAAAGTGGCATTGGCCACCAATGGCATCTGTGGAAATGGGCATCATATTGTGCATCGGAGAAAATAGCTGAGCAAGATGCTGGGAAATATGAAGCAGCAATGTATGCAGCACAATGTACATGCTGGGCTATGGCAAAATCATGGTTACATGTTCAGGTGGATTTGGAATTGGCTCATTTGGAACCAGGAAGAATGGATCAATTTAAAAGCATTGGAGATGCAATTGATGGAAGTCCTGGACATATTGACGGAGCTGTTCAGCCTTCAAATGGACCAGGAATTTGGCCGCTCCAAGTTTTGAACCAACAACCACGACAACTTTCAGATCTACTCCAGAAACTTCAATCAGGGGAATTAGTTCATGAAAGTGTTACTCGAGGATGCAAGGAGCAGCAACGTCAAATTGAGATGAAACTAATGCTAGGAGATATCTCACAATTGCTGGACCTTATATGGTCATGGATAGCCCCTTCAGAAGATGATCAGAGTTGCTTCAGGCCCCATGGAGATCCTCAGATGATTCGATTTGGTGCTCATCTAGTGCTTGTGCTTAGATATTTACTTGATGATGAAAATAAGGATACTTTGAGAGAGAAGATTATGAATGTTGGTGATCTCATTGTACACATGTATGCCATGTTTCTGTTTTCCAAGCAACACGAGGAGTTGGTGGGTATATATGCTTCTCAACTTGCACGCCACCGTTGCATTGACCTCTTTGTGCACATGATGGAACTGAGGCTAAACAGCAGTGTGCATGTCAAATATAAGATCTTCCTTTCTGCTATGGGGTATTTACAATTTTCTCCCGTGGACAACTCAAAAGGAAGTTTTGAAGAAATTGTTGAGAGGGTTCTGTCAAGATCTCGGGAAATGAAAGTTGGCAAGTATGATAAGTTATCAGATGTTGCAGAGCAGCACCGGCTGCAGAGCCTTCCGAAAGCTATGGTTGTCCAGTGGCTATGCTTTACACCCCCCTCAACAGTTACCAATGTTGAGGATGTCAGTACAAAACTTCTTCTACGAGCTTTGATACACAGCAACATATTGTTCCGGGAGTTTGCCCTGGTTTCAATGTGGAGAGTTCCTGCAATGCCCATTGGTGCTCACACATTACTTAGTTTCCTTGCTGAACCTTTAAAACAACTTTCAGAATCTTCTGATACCTTGGAGACTTACAACGTGTCTCAGAATCTCAAAGAGTTCCACGATTGGAGTGAGTATTATTCTTGTGATGCAAAATATCGCAACTGGCTCAAAATTGAATTAGAGAATGCAGAGGTTTCTCCTCTTGAACTCTCAATGGAGGAAAAACAAAGGACCGTTTCAGCAGCCAATGAGACTCTGAATTCATCTCTGTCATTGTTACTGAGAACTGAAAATCCTTGGTTAGCTTCAGCTCAAGATCATTTGTACGAATCTGTGGAACCTATATTTCTTGAATTGCACGCCACCGCAATGCTTTGCTTGCCATCTGGTGAATGTCTGCCTCCAGATGCAACCGTGTGCACTACATTGATGAGTGCTCTGTACTCTTCAGTGAGCGAGGAAGATGTGTTGCATAGGCAACTAATGATAAATGTCACCGTACCCTCAAAGGACAATTACTGTGTAGAGGTTGTGCTTCGCTGCTTGGCAGTGGCAGGTGATGGTCTTGGGCCACAGGAACACACTGATGGGGGTCTTCTTGGTACTGTTATGGCTGCTGGCTTCAAAGGTGAGTTGCTTCGTTTTCAAGCTGGAGTTACCATTGAGATTTCCCGATTAGATGCTTGGTATTCGAGCAAAGAAGGTTCCCTAGAGAGCCCAGCAACGTACATTGTGCGGGGCCTTTGTCGTAGGTGCTGTATTCCAGAAGTCATTCTTCGATGCATGCAGGTCTCTCTTTCGCTTATAGAGTTGGGTGTTCCACCTGAAAGCCATGATCAGTTGATCGAATTAGTTGCTAGCTCTGAAGCTGGGGTCCTTCATTTGTTTAGTCACCAACAATTGCAAGAATTTTTGTTGTTTGAGAGGGAATACTCCATAAGCCAAATGGAGCTTGAAGAGGAGCTTTCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000972 GO:0000973 GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006355 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0008104 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016043 GO:0017038 GO:0017056 GO:0019219 GO:0019222 GO:0022607 GO:0031080 GO:0031090 GO:0031323 GO:0031326 GO:0031503 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0034622 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0046931 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051276 GO:0051292 GO:0051641 GO:0051649 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup84_Nup100

Protein Analysis

1073

Amino Acids

121.16

Weight (kDa)

5.24

Isoelectric Point (pI)

53.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nup84_Nup100	PF04121	232 - 855	4.3e-45	Nuclear pore protein 84 / 107

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14120 AT3G14120 AT3G14120
fragaria_vesca	FvH4_6g35170 FvH4_6g35170
malus_domestica	MD09G1178100.v1.1 MD17G1148600.v1.1
prunus_persica	Prupe.3G037400_v2.0.a1 Prupe.3G037400_v2.0.a1
pyrus_communis	pycom09g09650 pycom17g14190
rosa_chinensis	RchiOBHm_Chr2g0146431
rosa_laevigata	RLG00000020200
rosa_multiflora	Rmu_sc0001986.1_g000003 Rmu_sc0030037.1_g000003
rosa_roxburghii	Rroxscaffold_2G00100100
rosa_rugosa	Rorug02G0394300
rosa_samantha	Rh2AG451100 Rh2BG463600 Rh2CG437900 Rh2DG472600
rosa_wichuraiana	Rw2G036820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2789
Acc36I	ACCTGC	2 cut(s)	2789, 3022
AccB1I	GGYRCC	1 cut(s)	815
AccB7I	CCANNNNNTGG	1 cut(s)	833
AccBSI	CCGCTC	1 cut(s)	1444
AccI	GTMKAC	1 cut(s)	736
AciI	CCGC	5 cut(s)	799, 1040, 1442, 2610, 2980
AclWI	GGATC	4 cut(s)	371, 643, 1359, 1658
AcoI	YGGCCR	2 cut(s)	1168, 1439
AcsI	RAATTY	6 cut(s)	121, 169, 837, 1434, 2503, 3152
AcuI	CTGAAG	6 cut(s)	663, 1611, 1633, 2535, 2676, 3129
AcvI	CACGTG	1 cut(s)	923
AcyI	GRCGYC	1 cut(s)	816
AfaI	GTAC	9 cut(s)	883, 1273, 1779, 2164, 2570, 2687, 2745, 2848, 2972
AfiI	CCNNNNNNNGG	6 cut(s)	287, 510, 591, 833, 1039, 1424
AflII	CTTAAG	2 cut(s)	265, 863
AflIII	ACRYGT	4 cut(s)	920, 1303, 1782, 2337
AjnI	CCWGG	5 cut(s)	900, 1339, 1390, 1429, 2220
AjuI	GAANNNNNNNTTGG	4 cut(s)	1149, 1181, 2019, 2051
AloI	GAACNNNNNNTCC	2 cut(s)	2521, 2553
Alw21I	GWGCWC	5 cut(s)	1690, 1881, 2263, 2666, 2683
Alw26I	GTCTC	6 cut(s)	810, 827, 2321, 2346, 2489, 3040
Alw44I	GTGCAC	2 cut(s)	1877, 2662
AlwI	GGATC	4 cut(s)	371, 643, 1359, 1658
Ama87I	CYCGRG	3 cut(s)	41, 1530, 2022
AoxI	GGCC	5 cut(s)	1168, 1439, 1652, 2813, 2983
ApaLI	GTGCAC	2 cut(s)	1877, 2662
ApoI	RAATTY	6 cut(s)	121, 169, 837, 1434, 2503, 3152
ArsI	GACNNNNNNTTYG	2 cut(s)	1419, 1451
Asp700I	GAANNNNTTC	3 cut(s)	478, 1512, 3015
AspLEI	GCGC	1 cut(s)	818
AsuC2I	CCSGG	1 cut(s)	2210
AsuHPI	GGTGA	9 cut(s)	890, 1016, 1126, 1778, 2645, 2731, 2813, 2885, 3128
AsuNHI	GCTAGC	1 cut(s)	3101
AvaI	CYCGRG	3 cut(s)	41, 1530, 2022
AvaII	GGWCC	7 cut(s)	46, 582, 715, 1427, 1600, 2475, 3118
BaeGI	GKGCMC	2 cut(s)	1881, 2666
BalI	TGGCCA	1 cut(s)	1170
BanI	GGYRCC	1 cut(s)	815
BanII	GRGCYC	1 cut(s)	2963
BarI	GAAGNNNNNNTAC	2 cut(s)	1822, 1854
BauI	CACGAG	1 cut(s)	1814
BbrPI	CACGTG	1 cut(s)	923
BbsI	GAAGAC	2 cut(s)	1012, 2831
Bbv12I	GWGCWC	5 cut(s)	1690, 1881, 2263, 2666, 2683
BccI	CCATC	8 cut(s)	281, 299, 365, 1376, 1879, 2635, 2798, 2825
BcgI	CGANNNNNNTGC	2 cut(s)	3080, 3114
BciT130I	CCWGG	5 cut(s)	902, 1341, 1392, 1431, 2222
BciVI	GTATCC	1 cut(s)	1729
BclI	TGATCA	3 cut(s)	241, 1636, 3079
BcnI	CCSGG	1 cut(s)	2210
BcoDI	GTCTC	6 cut(s)	810, 827, 2321, 2346, 2489, 3040
BfaI	CTAG	6 cut(s)	147, 755, 1577, 1694, 2954, 3102
BfmI	CTRYAG	1 cut(s)	2081
BfoI	RGCGCY	1 cut(s)	819
BfrI	CTTAAG	2 cut(s)	265, 863
BfuAI	ACCTGC	2 cut(s)	2789, 3022
BfuI	GTATCC	1 cut(s)	1729
BglII	AGATCT	3 cut(s)	1480, 1926, 2018
BlpI	GCTNAGC	2 cut(s)	763, 1224
Bme1390I	CCNGG	6 cut(s)	902, 1341, 1392, 1431, 2210, 2222
Bme18I	GGWCC	7 cut(s)	46, 582, 715, 1427, 1600, 2475, 3118
BmeT110I	CYCGRG	3 cut(s)	41, 1530, 2022
BmrFI	CCNGG	6 cut(s)	902, 1341, 1392, 1431, 2210, 2222
BmtI	GCTAGC	1 cut(s)	3105
BpiI	GAAGAC	2 cut(s)	1012, 2831
BpmI	CTGGAG	4 cut(s)	862, 1472, 2631, 2916
Bpu1102I	GCTNAGC	2 cut(s)	763, 1224
BpuEI	CTTGAG	1 cut(s)	2541
BpuMI	CCSGG	1 cut(s)	2210
BsaAI	YACGTR	1 cut(s)	923
BsaBI	GATNNNNATC	2 cut(s)	240, 375
BsaHI	GRCGYC	1 cut(s)	816
BsaI	GGTCTC	2 cut(s)	810, 3040
BsaJI	CCNNGG	7 cut(s)	42, 1049, 1657, 1965, 2220, 2322, 2540
Bsc4I	CCNNNNNNNGG	6 cut(s)	287, 510, 591, 833, 1039, 1424
Bse118I	RCCGGY	2 cut(s)	1032, 2076
Bse1I	ACTGG	4 cut(s)	366, 879, 2110, 2411
Bse3DI	GCAATG	3 cut(s)	1260, 2253, 2619
Bse8I	GATNNNNATC	2 cut(s)	240, 375
BseBI	CCWGG	5 cut(s)	902, 1341, 1392, 1431, 2222
BseDI	CCNNGG	7 cut(s)	42, 1049, 1657, 1965, 2220, 2322, 2540
BseGI	GGATG	3 cut(s)	307, 1541, 2161
BseJI	GATNNNNATC	2 cut(s)	240, 375
BseLI	CCNNNNNNNGG	6 cut(s)	287, 510, 591, 833, 1039, 1424
BseMI	GCAATG	3 cut(s)	1260, 2253, 2619
BseMII	CTCAG	6 cut(s)	605, 1215, 1682, 1883, 2357, 2516
BseNI	ACTGG	4 cut(s)	366, 879, 2110, 2411
BseRI	GAGGAG	4 cut(s)	365, 1832, 2433, 3218
BseSI	GKGCMC	2 cut(s)	1881, 2666
BseYI	CCCAGC	5 cut(s)	311, 1235, 1278, 2962, 3113
BsgI	GTGCAG	1 cut(s)	177
BshFI	GGCC	5 cut(s)	1170, 1441, 1654, 2815, 2985
BshNI	GGYRCC	1 cut(s)	815
BsiHKAI	GWGCWC	5 cut(s)	1690, 1881, 2263, 2666, 2683
BsiHKCI	CYCGRG	3 cut(s)	41, 1530, 2022
BsiSI	CCGG	3 cut(s)	1033, 2077, 2209
BslFI	GGGAC	3 cut(s)	568, 652, 1056
BslI	CCNNNNNNNGG	6 cut(s)	287, 510, 591, 833, 1039, 1424
BsmAI	GTCTC	6 cut(s)	810, 827, 2321, 2346, 2489, 3040
BsmFI	GGGAC	3 cut(s)	568, 652, 1056
BsmI	GAATGC	2 cut(s)	355, 2434
BsnI	GGCC	5 cut(s)	1170, 1441, 1654, 2815, 2985
Bso31I	GGTCTC	2 cut(s)	810, 3040
BsoBI	CYCGRG	3 cut(s)	41, 1530, 2022
Bsp1286I	GDGCHC	6 cut(s)	1690, 1881, 2263, 2666, 2683, 2963
Bsp1407I	TGTACA	2 cut(s)	1271, 1777
Bsp1720I	GCTNAGC	2 cut(s)	763, 1224
Bsp19I	CCATGG	2 cut(s)	1049, 1657
BspACI	CCGC	5 cut(s)	799, 1040, 1442, 2610, 2980
BspANI	GGCC	5 cut(s)	1170, 1441, 1654, 2815, 2985
BspCNI	CTCAG	6 cut(s)	606, 1216, 1681, 1884, 2356, 2517
BspHI	TCATGA	1 cut(s)	1516
BspMAI	CTGCAG	1 cut(s)	2085
BspMI	ACCTGC	2 cut(s)	2789, 3022
BspOI	GCTAGC	1 cut(s)	3105
BspPI	GGATC	4 cut(s)	371, 643, 1359, 1658
BspQI	GCTCTTC	1 cut(s)	423
BspT107I	GGYRCC	1 cut(s)	815
BspTI	CTTAAG	2 cut(s)	265, 863
BspTNI	GGTCTC	2 cut(s)	810, 3040
BsrBI	CCGCTC	1 cut(s)	1444
BsrDI	GCAATG	3 cut(s)	1260, 2253, 2619
BsrFI	RCCGGY	2 cut(s)	1032, 2076
BsrGI	TGTACA	2 cut(s)	1271, 1777
BsrI	ACTGG	4 cut(s)	366, 879, 2110, 2411
BssAI	RCCGGY	2 cut(s)	1032, 2076
BssECI	CCNNGG	7 cut(s)	42, 1049, 1657, 1965, 2220, 2322, 2540
BssNI	GRCGYC	1 cut(s)	816
BssSI	CACGAG	1 cut(s)	1814
BssT1I	CCWWGG	4 cut(s)	1049, 1657, 2322, 2540
Bst2BI	CACGAG	1 cut(s)	1814
Bst2UI	CCWGG	5 cut(s)	902, 1341, 1392, 1431, 2222
Bst4CI	ACNGT	9 cut(s)	140, 892, 1859, 2140, 2479, 2659, 2743, 2765, 2851
Bst6I	CTCTTC	6 cut(s)	423, 639, 1008, 1124, 2695, 3195
BstACI	GRCGYC	1 cut(s)	816
BstAFI	CTTAAG	2 cut(s)	265, 863
BstAPI	GCANNNNNTGC	2 cut(s)	1259, 2080
BstAUI	TGTACA	2 cut(s)	1271, 1777
BstBAI	YACGTR	1 cut(s)	923
BstC8I	GCNNGC	8 cut(s)	697, 1143, 1852, 2604, 2624, 2863, 3029, 3103
BstDSI	CCRYGG	3 cut(s)	1049, 1657, 1965
BstF5I	GGATG	3 cut(s)	307, 1541, 2161
BstH2I	RGCGCY	1 cut(s)	819
BstHHI	GCGC	1 cut(s)	818
BstMAI	GTCTC	6 cut(s)	810, 827, 2321, 2346, 2489, 3040
BstMWI	GCNNNNNNNGC	6 cut(s)	773, 1259, 1860, 2077, 2080, 2623
BstNI	CCWGG	5 cut(s)	902, 1341, 1392, 1431, 2222
BstNSI	RCATGY	8 cut(s)	106, 932, 1023, 1278, 1307, 1786, 1916, 3031
BstSCI	CCNGG	6 cut(s)	900, 1339, 1390, 1429, 2208, 2220
BstSFI	CTRYAG	1 cut(s)	2081
BstSLI	GKGCMC	2 cut(s)	1881, 2666
BstV2I	GAAGAC	2 cut(s)	1012, 2831
BstX2I	RGATCY	6 cut(s)	376, 648, 1480, 1663, 1926, 2018
BstXI	CCANNNNNNTGG	1 cut(s)	1437
BstYI	RGATCY	6 cut(s)	376, 648, 1480, 1663, 1926, 2018
BsuI	GTATCC	1 cut(s)	1729
BsuRI	GGCC	5 cut(s)	1170, 1441, 1654, 2815, 2985
BtgI	CCRYGG	3 cut(s)	1049, 1657, 1965
BtsCI	GGATG	3 cut(s)	307, 1541, 2161
BtsI	GCAGTG	2 cut(s)	1912, 2799
BtsIMutI	CAGTG	7 cut(s)	145, 359, 1912, 2117, 2700, 2799, 2826
BveI	ACCTGC	2 cut(s)	2789, 3022
Cac8I	GCNNGC	8 cut(s)	697, 1143, 1852, 2604, 2624, 2863, 3029, 3103
CciI	TCATGA	1 cut(s)	1516
CfoI	GCGC	1 cut(s)	818
Cfr10I	RCCGGY	2 cut(s)	1032, 2076
CseI	GACGC	1 cut(s)	26
Csp6I	GTAC	9 cut(s)	882, 1272, 1778, 2163, 2569, 2686, 2744, 2847, 2971
CviQI	GTAC	9 cut(s)	882, 1272, 1778, 2163, 2569, 2686, 2744, 2847, 2971
DinI	GGCGCC	1 cut(s)	817
DraI	TTTAAA	2 cut(s)	1360, 2295
EaeI	YGGCCR	2 cut(s)	1168, 1439
Eam1104I	CTCTTC	6 cut(s)	423, 639, 1008, 1124, 2695, 3195
EarI	CTCTTC	6 cut(s)	423, 639, 1008, 1124, 2695, 3195
Eco130I	CCWWGG	4 cut(s)	1049, 1657, 2322, 2540
Eco24I	GRGCYC	1 cut(s)	2963
Eco31I	GGTCTC	2 cut(s)	810, 3040
Eco32I	GATATC	1 cut(s)	1585
Eco47I	GGWCC	7 cut(s)	46, 582, 715, 1427, 1600, 2475, 3118
Eco57I	CTGAAG	6 cut(s)	663, 1611, 1633, 2535, 2676, 3129
Eco72I	CACGTG	1 cut(s)	923
Eco88I	CYCGRG	3 cut(s)	41, 1530, 2022
EcoO109I	RGGNCCY	4 cut(s)	46, 1653, 2983, 3118
EcoRI	GAATTC	2 cut(s)	121, 2503
EcoRII	CCWGG	5 cut(s)	900, 1339, 1390, 1429, 2220
EcoRV	GATATC	1 cut(s)	1585
EcoT14I	CCWWGG	4 cut(s)	1049, 1657, 2322, 2540
EcoT22I	ATGCAT	1 cut(s)	3029
EcoT38I	GRGCYC	1 cut(s)	2963
EgeI	GGCGCC	1 cut(s)	817
EheI	GGCGCC	1 cut(s)	817
ErhI	CCWWGG	4 cut(s)	1049, 1657, 2322, 2540
FalI	AAGNNNNNCTT	5 cut(s)	244, 276, 3003, 3035, 3192
FaqI	GGGAC	3 cut(s)	568, 652, 1056
FauI	CCCGC	3 cut(s)	792, 1033, 2973
FbaI	TGATCA	3 cut(s)	241, 1636, 3079
FblI	GTMKAC	1 cut(s)	736
FokI	GGATG	3 cut(s)	314, 1548, 2168
FriOI	GRGCYC	1 cut(s)	2963
FspBI	CTAG	6 cut(s)	147, 755, 1577, 1694, 2954, 3102
GlaI	GCGC	1 cut(s)	817
GsaI	CCCAGC	5 cut(s)	315, 1239, 1282, 2966, 3117
GsuI	CTGGAG	4 cut(s)	862, 1472, 2631, 2916
HaeII	RGCGCY	1 cut(s)	819
HaeIII	GGCC	5 cut(s)	1170, 1441, 1654, 2815, 2985
HapII	CCGG	3 cut(s)	1033, 2077, 2209
HgaI	GACGC	1 cut(s)	26
HhaI	GCGC	1 cut(s)	818
Hin1I	GRCGYC	1 cut(s)	816
Hin6I	GCGC	1 cut(s)	816
HinP1I	GCGC	1 cut(s)	816
HindIII	AAGCTT	1 cut(s)	28
HpaII	CCGG	3 cut(s)	1033, 2077, 2209
HphI	GGTGA	9 cut(s)	890, 1016, 1126, 1778, 2645, 2731, 2813, 2885, 3128
Hpy166II	GTNNAC	7 cut(s)	322, 737, 926, 1780, 1879, 1969, 2664
Hpy8I	GTNNAC	7 cut(s)	322, 737, 926, 1780, 1879, 1969, 2664
Hpy99I	CGWCG	2 cut(s)	75, 164
HpyAV	CCTTC	8 cut(s)	264, 541, 752, 1428, 1635, 2099, 2939, 3131
HpyCH4III	ACNGT	9 cut(s)	140, 892, 1859, 2140, 2479, 2659, 2743, 2765, 2851
HpyCH4IV	ACGT	5 cut(s)	6, 922, 1552, 2337, 2969
HpyF10VI	GCNNNNNNNGC	6 cut(s)	773, 1259, 1860, 2077, 2080, 2623
HpySE526I	ACGT	5 cut(s)	6, 922, 1552, 2337, 2969
Hsp92I	GRCGYC	1 cut(s)	816
HspAI	GCGC	1 cut(s)	816
KasI	GGCGCC	1 cut(s)	815
Ksp22I	TGATCA	3 cut(s)	241, 1636, 3079
LguI	GCTCTTC	1 cut(s)	423
LmnI	GCTCC	8 cut(s)	352, 872, 919, 1406, 1449, 1543, 3193, 3205
MaeI	CTAG	6 cut(s)	147, 755, 1577, 1694, 2954, 3102
MaeII	ACGT	5 cut(s)	6, 922, 1552, 2337, 2969
MaeIII	GTNAC	8 cut(s)	1022, 1299, 1525, 2140, 2520, 2737, 2899, 3134
MbiI	CCGCTC	1 cut(s)	1444
MfeI	CAATTG	3 cut(s)	1377, 1592, 3143
MflI	RGATCY	6 cut(s)	376, 648, 1480, 1663, 1926, 2018
MhlI	GDGCHC	6 cut(s)	1690, 1881, 2263, 2666, 2683, 2963
MlsI	TGGCCA	1 cut(s)	1170
MluNI	TGGCCA	1 cut(s)	1170
Mly113I	GGCGCC	1 cut(s)	816
MlyI	GAGTC	3 cut(s)	494, 982, 2491
MmeI	TCCRAC	4 cut(s)	404, 528, 941, 954
Mox20I	TGGCCA	1 cut(s)	1170
Mph1103I	ATGCAT	1 cut(s)	3029
MroXI	GAANNNNTTC	3 cut(s)	478, 1512, 3015
MscI	TGGCCA	1 cut(s)	1170
MseI	TTAA	6 cut(s)	213, 266, 864, 995, 1359, 2294
MslI	CAYNNNNRTG	6 cut(s)	296, 730, 1521, 1785, 2612, 2829
Msp20I	TGGCCA	1 cut(s)	1170
MspCI	CTTAAG	2 cut(s)	265, 863
MspI	CCGG	3 cut(s)	1033, 2077, 2209
MspR9I	CCNGG	6 cut(s)	902, 1341, 1392, 1431, 2210, 2222
MunI	CAATTG	3 cut(s)	1377, 1592, 3143
Mva1269I	GAATGC	2 cut(s)	355, 2434
MvaI	CCWGG	5 cut(s)	902, 1341, 1392, 1431, 2222
MwoI	GCNNNNNNNGC	6 cut(s)	773, 1259, 1860, 2077, 2080, 2623
NarI	GGCGCC	1 cut(s)	816
NciI	CCSGG	1 cut(s)	2210
NcoI	CCATGG	2 cut(s)	1049, 1657
NheI	GCTAGC	1 cut(s)	3101
NmuCI	GTSAC	3 cut(s)	1022, 2737, 3134
NsiI	ATGCAT	1 cut(s)	3029
NspI	RCATGY	8 cut(s)	106, 932, 1023, 1278, 1307, 1786, 1916, 3031
PaeI	GCATGC	1 cut(s)	3031
PaeR7I	CTCGAG	1 cut(s)	1530
PagI	TCATGA	1 cut(s)	1516
PaqCI	CACCTGC	1 cut(s)	2789
PciI	ACATGT	2 cut(s)	1303, 1782
PciSI	GCTCTTC	1 cut(s)	423
PctI	GAATGC	2 cut(s)	355, 2434
PdmI	GAANNNNTTC	3 cut(s)	478, 1512, 3015
PfeI	GAWTC	8 cut(s)	143, 410, 464, 965, 1675, 2309, 2347, 2573
PflMI	CCANNNNNTGG	1 cut(s)	833
PfoI	TCCNGGA	2 cut(s)	1390, 2208
PleI	GAGTC	3 cut(s)	493, 982, 2491
PluTI	GGCGCC	1 cut(s)	819
PmaCI	CACGTG	1 cut(s)	923
PmlI	CACGTG	1 cut(s)	923
PpsI	GAGTC	3 cut(s)	493, 982, 2491
Ppu21I	YACGTR	1 cut(s)	923
PpuMI	RGGWCCY	2 cut(s)	46, 3118
PscI	ACATGT	2 cut(s)	1303, 1782
Psp5II	RGGWCCY	2 cut(s)	46, 3118
Psp6I	CCWGG	5 cut(s)	900, 1339, 1390, 1429, 2220
PspCI	CACGTG	1 cut(s)	923
PspFI	CCCAGC	5 cut(s)	311, 1235, 1278, 2962, 3113
PspGI	CCWGG	5 cut(s)	900, 1339, 1390, 1429, 2220
PspPPI	RGGWCCY	2 cut(s)	46, 3118
PspXI	VCTCGAGB	1 cut(s)	1530
PstI	CTGCAG	1 cut(s)	2085
PsuI	RGATCY	6 cut(s)	376, 648, 1480, 1663, 1926, 2018
RsaI	GTAC	9 cut(s)	883, 1273, 1779, 2164, 2570, 2687, 2745, 2848, 2972
RsaNI	GTAC	9 cut(s)	882, 1272, 1778, 2163, 2569, 2686, 2744, 2847, 2971
RseI	CAYNNNNRTG	6 cut(s)	296, 730, 1521, 1785, 2612, 2829
SapI	GCTCTTC	1 cut(s)	423
SaqAI	TTAA	6 cut(s)	213, 266, 864, 995, 1359, 2294
SchI	GAGTC	3 cut(s)	494, 982, 2491
ScrFI	CCNGG	6 cut(s)	902, 1341, 1392, 1431, 2210, 2222
SduI	GDGCHC	6 cut(s)	1690, 1881, 2263, 2666, 2683, 2963
SfcI	CTRYAG	1 cut(s)	2081
SfoI	GGCGCC	1 cut(s)	817
Sfr274I	CTCGAG	1 cut(s)	1530
SinI	GGWCC	7 cut(s)	46, 582, 715, 1427, 1600, 2475, 3118
SlaI	CTCGAG	1 cut(s)	1530
SmiMI	CAYNNNNRTG	6 cut(s)	296, 730, 1521, 1785, 2612, 2829
SmlI	CTYRAG	4 cut(s)	265, 863, 1530, 2556
SmoI	CTYRAG	4 cut(s)	265, 863, 1530, 2556
SphI	GCATGC	1 cut(s)	3031
SsiI	CCGC	5 cut(s)	799, 1040, 1442, 2610, 2980
SspDI	GGCGCC	1 cut(s)	815
SspI	AATATT	1 cut(s)	211
SspMI	CTAG	6 cut(s)	147, 755, 1577, 1694, 2954, 3102
StyD4I	CCNGG	6 cut(s)	900, 1339, 1390, 1429, 2208, 2220
StyI	CCWWGG	4 cut(s)	1049, 1657, 2322, 2540
TaaI	ACNGT	9 cut(s)	140, 892, 1859, 2140, 2479, 2659, 2743, 2765, 2851
TaiI	ACGT	5 cut(s)	9, 925, 1555, 2340, 2972
TaqI	TCGA	9 cut(s)	36, 73, 204, 488, 1531, 1678, 2936, 3022, 3090
TatI	WGTACW	5 cut(s)	881, 1271, 1777, 2162, 2685
TauI	GCSGC	1 cut(s)	1444
TfiI	GAWTC	8 cut(s)	143, 410, 464, 965, 1675, 2309, 2347, 2573
Tru1I	TTAA	6 cut(s)	213, 266, 864, 995, 1359, 2294
Tru9I	TTAA	6 cut(s)	213, 266, 864, 995, 1359, 2294
TscAI	CASTG	7 cut(s)	145, 366, 1912, 2117, 2700, 2799, 2833
TseFI	GTSAC	3 cut(s)	1022, 2737, 3134
Tsp45I	GTSAC	3 cut(s)	1022, 2737, 3134
TspGWI	ACGGA	2 cut(s)	1086, 1419
TspRI	CASTG	7 cut(s)	145, 366, 1912, 2117, 2700, 2799, 2833
Van91I	CCANNNNNTGG	1 cut(s)	833
Vha464I	CTTAAG	2 cut(s)	265, 863
VneI	GTGCAC	2 cut(s)	1877, 2662
VpaK11BI	GGWCC	7 cut(s)	46, 582, 715, 1427, 1600, 2475, 3118
XapI	RAATTY	6 cut(s)	121, 169, 837, 1434, 2503, 3152
XceI	RCATGY	8 cut(s)	106, 932, 1023, 1278, 1307, 1786, 1916, 3031
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3187
XhoI	CTCGAG	1 cut(s)	1530
XmiI	GTMKAC	1 cut(s)	736
XmnI	GAANNNNTTC	3 cut(s)	478, 1512, 3015
XspI	CTAG	6 cut(s)	147, 755, 1577, 1694, 2954, 3102
Zsp2I	ATGCAT	1 cut(s)	3029

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.