Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G14330 |
| fragaria_vesca | FvH4_1g28620 |
| malus_domestica | MD17G1262400.v1.1 |
| prunus_persica | Prupe.3G163800_v2.0.a1 |
| pyrus_communis | pycom17g26230 |
| rosa_chinensis | RchiOBHm_Chr3g0492571 |
| rosa_laevigata | RLG00000022759 |
| rosa_multiflora | Rmu_sc0000831.1_g000061 Rmu_sc0008694.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00325000 Rroxscaffold_4G00325010 |
| rosa_rugosa | Rorug03G0254500 |
| rosa_samantha | Rh3BG340900 Rh3BG341000 Rh3BG341100 Rh3CG338400 Rh3DG340200 Rh3DG340300 Rh5BG302200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 592, 2100 |
| AccII | CGCG | 1 cut(s) | 1940 |
| AciI | CCGC | 2 cut(s) | 429, 1035 |
| AclWI | GGATC | 2 cut(s) | 558, 1537 |
| AcsI | RAATTY | 6 cut(s) | 149, 182, 263, 358, 706, 916 |
| AcvI | CACGTG | 1 cut(s) | 1046 |
| AfaI | GTAC | 3 cut(s) | 126, 933, 1740 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 532 |
| AflIII | ACRYGT | 1 cut(s) | 1045 |
| AgsI | TTSAA | 9 cut(s) | 730, 748, 835, 1259, 1280, 1385, 1607, 1760, 1844 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 290 |
| AjnI | CCWGG | 2 cut(s) | 700, 1618 |
| AleI | CACNNNNGTG | 1 cut(s) | 1965 |
| Alw21I | GWGCWC | 1 cut(s) | 831 |
| Alw26I | GTCTC | 8 cut(s) | 131, 246, 277, 317, 491, 648, 1927, 2067 |
| AlwI | GGATC | 2 cut(s) | 558, 1537 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 122, 1090 |
| ApeKI | GCWGC | 3 cut(s) | 614, 1052, 1583 |
| ApoI | RAATTY | 6 cut(s) | 149, 182, 263, 358, 706, 916 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1974 |
| AsuC2I | CCSGG | 1 cut(s) | 1066 |
| AsuHPI | GGTGA | 5 cut(s) | 639, 1054, 1404, 1498, 1979 |
| AsuII | TTCGAA | 2 cut(s) | 132, 147 |
| BbrPI | CACGTG | 1 cut(s) | 1046 |
| BbsI | GAAGAC | 1 cut(s) | 286 |
| Bbv12I | GWGCWC | 1 cut(s) | 831 |
| BbvI | GCAGC | 3 cut(s) | 626, 1039, 1595 |
| BccI | CCATC | 5 cut(s) | 44, 70, 878, 1129, 1304 |
| BceAI | ACGGC | 3 cut(s) | 79, 326, 358 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1858, 1892 |
| BciT130I | CCWGG | 2 cut(s) | 702, 1620 |
| BcnI | CCSGG | 1 cut(s) | 1066 |
| BcoDI | GTCTC | 8 cut(s) | 131, 246, 277, 317, 491, 648, 1927, 2067 |
| BfaI | CTAG | 3 cut(s) | 483, 636, 2052 |
| BglII | AGATCT | 2 cut(s) | 23, 751 |
| BisI | GCNGC | 3 cut(s) | 615, 1053, 1584 |
| BlpI | GCTNAGC | 1 cut(s) | 509 |
| BlsI | GCNGC | 3 cut(s) | 616, 1054, 1585 |
| Bme1390I | CCNGG | 3 cut(s) | 702, 1066, 1620 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 290 |
| BmiI | GGNNCC | 2 cut(s) | 34, 1977 |
| BmrFI | CCNGG | 3 cut(s) | 702, 1066, 1620 |
| BmrI | ACTGGG | 1 cut(s) | 245 |
| BmsI | GCATC | 3 cut(s) | 856, 972, 1645 |
| BmuI | ACTGGG | 1 cut(s) | 245 |
| BpiI | GAAGAC | 1 cut(s) | 286 |
| Bpu10I | CCTNAGC | 1 cut(s) | 171 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 509 |
| Bpu14I | TTCGAA | 2 cut(s) | 132, 147 |
| BpuMI | CCSGG | 1 cut(s) | 1066 |
| BsaAI | YACGTR | 2 cut(s) | 872, 1046 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1760 |
| BsaI | GGTCTC | 2 cut(s) | 246, 317 |
| BsaJI | CCNNGG | 5 cut(s) | 278, 445, 701, 720, 1619 |
| BsaWI | WCCGGW | 1 cut(s) | 1850 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 532 |
| Bse118I | RCCGGY | 1 cut(s) | 1414 |
| Bse1I | ACTGG | 2 cut(s) | 240, 2132 |
| Bse3DI | GCAATG | 1 cut(s) | 1118 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1760 |
| BseBI | CCWGG | 2 cut(s) | 702, 1620 |
| BseDI | CCNNGG | 5 cut(s) | 278, 445, 701, 720, 1619 |
| BseGI | GGATG | 3 cut(s) | 365, 1290, 2034 |
| BseJI | GATNNNNATC | 1 cut(s) | 1760 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 532 |
| BseMI | GCAATG | 1 cut(s) | 1118 |
| BseMII | CTCAG | 7 cut(s) | 162, 257, 591, 885, 949, 2014, 2083 |
| BseNI | ACTGG | 2 cut(s) | 240, 2132 |
| BseXI | GCAGC | 3 cut(s) | 626, 1039, 1595 |
| BsgI | GTGCAG | 1 cut(s) | 2031 |
| Bsh1236I | CGCG | 1 cut(s) | 1940 |
| BsiHKAI | GWGCWC | 1 cut(s) | 831 |
| BsiSI | CCGG | 3 cut(s) | 1065, 1415, 1851 |
| BslFI | GGGAC | 1 cut(s) | 1682 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 532 |
| BsmAI | GTCTC | 8 cut(s) | 131, 246, 277, 317, 491, 648, 1927, 2067 |
| BsmBI | CGTCTC | 2 cut(s) | 131, 648 |
| BsmFI | GGGAC | 1 cut(s) | 1682 |
| Bso31I | GGTCTC | 2 cut(s) | 246, 317 |
| Bsp119I | TTCGAA | 2 cut(s) | 132, 147 |
| Bsp1286I | GDGCHC | 1 cut(s) | 831 |
| Bsp143I | GATC | 8 cut(s) | 6, 23, 550, 663, 751, 996, 1467, 1529 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 509 |
| Bsp19I | CCATGG | 2 cut(s) | 278, 445 |
| Bsp68I | TCGCGA | 1 cut(s) | 1940 |
| BspACI | CCGC | 2 cut(s) | 429, 1035 |
| BspCNI | CTCAG | 7 cut(s) | 163, 256, 592, 886, 948, 2013, 2082 |
| BspFNI | CGCG | 1 cut(s) | 1940 |
| BspHI | TCATGA | 2 cut(s) | 955, 1882 |
| BspLI | GGNNCC | 2 cut(s) | 34, 1977 |
| BspPI | GGATC | 2 cut(s) | 558, 1537 |
| BspQI | GCTCTTC | 1 cut(s) | 1062 |
| BspT104I | TTCGAA | 2 cut(s) | 132, 147 |
| BspTNI | GGTCTC | 2 cut(s) | 246, 317 |
| BsrDI | GCAATG | 1 cut(s) | 1118 |
| BsrFI | RCCGGY | 1 cut(s) | 1414 |
| BsrI | ACTGG | 2 cut(s) | 240, 2132 |
| BssAI | RCCGGY | 1 cut(s) | 1414 |
| BssECI | CCNNGG | 5 cut(s) | 278, 445, 701, 720, 1619 |
| BssMI | GATC | 8 cut(s) | 6, 23, 550, 663, 751, 996, 1467, 1529 |
| BssT1I | CCWWGG | 2 cut(s) | 278, 445 |
| Bst2UI | CCWGG | 2 cut(s) | 702, 1620 |
| Bst4CI | ACNGT | 4 cut(s) | 37, 124, 1235, 2018 |
| Bst6I | CTCTTC | 3 cut(s) | 129, 984, 1062 |
| BstBAI | YACGTR | 2 cut(s) | 872, 1046 |
| BstBI | TTCGAA | 2 cut(s) | 132, 147 |
| BstC8I | GCNNGC | 4 cut(s) | 515, 736, 1458, 1550 |
| BstDSI | CCRYGG | 3 cut(s) | 278, 445, 720 |
| BstEII | GGTNACC | 1 cut(s) | 645 |
| BstF5I | GGATG | 3 cut(s) | 365, 1290, 2034 |
| BstFNI | CGCG | 1 cut(s) | 1940 |
| BstKTI | GATC | 8 cut(s) | 9, 26, 553, 666, 754, 999, 1470, 1532 |
| BstMAI | GTCTC | 8 cut(s) | 131, 246, 277, 317, 491, 648, 1927, 2067 |
| BstMBI | GATC | 8 cut(s) | 6, 23, 550, 663, 751, 996, 1467, 1529 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 514, 620, 731, 835, 1507 |
| BstNI | CCWGG | 2 cut(s) | 702, 1620 |
| BstPI | GGTNACC | 1 cut(s) | 645 |
| BstSCI | CCNGG | 3 cut(s) | 700, 1064, 1618 |
| BstUI | CGCG | 1 cut(s) | 1940 |
| BstV1I | GCAGC | 3 cut(s) | 626, 1039, 1595 |
| BstV2I | GAAGAC | 1 cut(s) | 286 |
| BstX2I | RGATCY | 3 cut(s) | 23, 550, 751 |
| BstYI | RGATCY | 3 cut(s) | 23, 550, 751 |
| BtgI | CCRYGG | 3 cut(s) | 278, 445, 720 |
| BtsCI | GGATG | 3 cut(s) | 365, 1290, 2034 |
| BtsI | GCAGTG | 2 cut(s) | 1485, 1532 |
| BtsIMutI | CAGTG | 4 cut(s) | 233, 1485, 1532, 1575 |
| BtuMI | TCGCGA | 1 cut(s) | 1940 |
| Cac8I | GCNNGC | 4 cut(s) | 515, 736, 1458, 1550 |
| CaiI | CAGNNNCTG | 2 cut(s) | 122, 1090 |
| CciI | TCATGA | 2 cut(s) | 955, 1882 |
| Cfr10I | RCCGGY | 1 cut(s) | 1414 |
| CseI | GACGC | 2 cut(s) | 665, 1506 |
| Csp6I | GTAC | 3 cut(s) | 125, 932, 1739 |
| CviQI | GTAC | 3 cut(s) | 125, 932, 1739 |
| DpnI | GATC | 8 cut(s) | 8, 25, 552, 665, 753, 998, 1469, 1531 |
| DpnII | GATC | 8 cut(s) | 6, 23, 550, 663, 751, 996, 1467, 1529 |
| DriI | GACNNNNNGTC | 1 cut(s) | 290 |
| Eam1104I | CTCTTC | 3 cut(s) | 129, 984, 1062 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 290 |
| EarI | CTCTTC | 3 cut(s) | 129, 984, 1062 |
| Eco130I | CCWWGG | 2 cut(s) | 278, 445 |
| Eco31I | GGTCTC | 2 cut(s) | 246, 317 |
| Eco32I | GATATC | 1 cut(s) | 717 |
| Eco72I | CACGTG | 1 cut(s) | 1046 |
| Eco91I | GGTNACC | 1 cut(s) | 645 |
| EcoO65I | GGTNACC | 1 cut(s) | 645 |
| EcoRI | GAATTC | 2 cut(s) | 358, 916 |
| EcoRII | CCWGG | 2 cut(s) | 700, 1618 |
| EcoRV | GATATC | 1 cut(s) | 717 |
| EcoT14I | CCWWGG | 2 cut(s) | 278, 445 |
| ErhI | CCWWGG | 2 cut(s) | 278, 445 |
| Esp3I | CGTCTC | 2 cut(s) | 131, 648 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 210, 242, 643, 675 |
| FaqI | GGGAC | 1 cut(s) | 1682 |
| FauI | CCCGC | 1 cut(s) | 1042 |
| FblI | GTMKAC | 2 cut(s) | 592, 2100 |
| Fnu4HI | GCNGC | 3 cut(s) | 615, 1053, 1584 |
| FokI | GGATG | 3 cut(s) | 352, 1297, 2041 |
| Fsp4HI | GCNGC | 3 cut(s) | 615, 1053, 1584 |
| FspBI | CTAG | 3 cut(s) | 483, 636, 2052 |
| GluI | GCNGC | 3 cut(s) | 615, 1053, 1584 |
| HapII | CCGG | 3 cut(s) | 1065, 1415, 1851 |
| HgaI | GACGC | 2 cut(s) | 665, 1506 |
| HincII | GTYRAC | 5 cut(s) | 808, 1020, 1197, 1444, 2101 |
| HindII | GTYRAC | 5 cut(s) | 808, 1020, 1197, 1444, 2101 |
| HindIII | AAGCTT | 3 cut(s) | 219, 396, 836 |
| HpaI | GTTAAC | 1 cut(s) | 1197 |
| HpaII | CCGG | 3 cut(s) | 1065, 1415, 1851 |
| HphI | GGTGA | 5 cut(s) | 639, 1054, 1404, 1498, 1979 |
| Hpy166II | GTNNAC | 8 cut(s) | 593, 808, 1020, 1043, 1197, 1444, 1922, 2101 |
| Hpy8I | GTNNAC | 8 cut(s) | 593, 808, 1020, 1043, 1197, 1444, 1922, 2101 |
| Hpy99I | CGWCG | 6 cut(s) | 41, 65, 338, 1018, 2102, 2105 |
| HpyAV | CCTTC | 6 cut(s) | 168, 204, 419, 796, 1477, 1964 |
| HpyCH4III | ACNGT | 4 cut(s) | 37, 124, 1235, 2018 |
| HpyCH4IV | ACGT | 4 cut(s) | 871, 1016, 1045, 1629 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 514, 620, 731, 835, 1507 |
| HpySE526I | ACGT | 4 cut(s) | 871, 1016, 1045, 1629 |
| KspAI | GTTAAC | 1 cut(s) | 1197 |
| Kzo9I | GATC | 8 cut(s) | 6, 23, 550, 663, 751, 996, 1467, 1529 |
| LguI | GCTCTTC | 1 cut(s) | 1062 |
| LmnI | GCTCC | 1 cut(s) | 1423 |
| Lsp1109I | GCAGC | 3 cut(s) | 626, 1039, 1595 |
| LweI | GCATC | 3 cut(s) | 856, 972, 1645 |
| MaeI | CTAG | 3 cut(s) | 483, 636, 2052 |
| MaeII | ACGT | 4 cut(s) | 871, 1016, 1045, 1629 |
| MaeIII | GTNAC | 9 cut(s) | 56, 112, 343, 491, 577, 645, 907, 2040, 2047 |
| MalI | GATC | 8 cut(s) | 8, 25, 552, 665, 753, 998, 1469, 1531 |
| MboI | GATC | 8 cut(s) | 6, 23, 550, 663, 751, 996, 1467, 1529 |
| MfeI | CAATTG | 1 cut(s) | 1839 |
| MflI | RGATCY | 3 cut(s) | 23, 550, 751 |
| MhlI | GDGCHC | 1 cut(s) | 831 |
| MlyI | GAGTC | 5 cut(s) | 598, 1188, 1301, 1929, 2067 |
| MmeI | TCCRAC | 2 cut(s) | 19, 61 |
| MnlI | CCTC | 9 cut(s) | 63, 100, 379, 761, 1153, 1620, 1700, 1769, 2078 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1974 |
| MseI | TTAA | 6 cut(s) | 923, 966, 1125, 1196, 1506, 1746 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1560, 1965 |
| MspI | CCGG | 3 cut(s) | 1065, 1415, 1851 |
| MspR9I | CCNGG | 3 cut(s) | 702, 1066, 1620 |
| MunI | CAATTG | 1 cut(s) | 1839 |
| MvaI | CCWGG | 2 cut(s) | 702, 1620 |
| MvnI | CGCG | 1 cut(s) | 1940 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 514, 620, 731, 835, 1507 |
| NciI | CCSGG | 1 cut(s) | 1066 |
| NcoI | CCATGG | 2 cut(s) | 278, 445 |
| NdeII | GATC | 8 cut(s) | 6, 23, 550, 663, 751, 996, 1467, 1529 |
| NlaIV | GGNNCC | 2 cut(s) | 34, 1977 |
| NmuCI | GTSAC | 5 cut(s) | 112, 343, 491, 645, 2040 |
| NruI | TCGCGA | 1 cut(s) | 1940 |
| NspV | TTCGAA | 2 cut(s) | 132, 147 |
| OliI | CACNNNNGTG | 1 cut(s) | 1965 |
| PagI | TCATGA | 2 cut(s) | 955, 1882 |
| PciSI | GCTCTTC | 1 cut(s) | 1062 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 339, 663, 1865 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1974 |
| PkrI | GCNGC | 3 cut(s) | 616, 1054, 1585 |
| PleI | GAGTC | 5 cut(s) | 597, 1187, 1300, 1929, 2066 |
| PmaCI | CACGTG | 1 cut(s) | 1046 |
| PmlI | CACGTG | 1 cut(s) | 1046 |
| PpsI | GAGTC | 5 cut(s) | 597, 1187, 1300, 1929, 2066 |
| Ppu21I | YACGTR | 2 cut(s) | 872, 1046 |
| Psp6I | CCWGG | 2 cut(s) | 700, 1618 |
| PspCI | CACGTG | 1 cut(s) | 1046 |
| PspEI | GGTNACC | 1 cut(s) | 645 |
| PspGI | CCWGG | 2 cut(s) | 700, 1618 |
| PspN4I | GGNNCC | 2 cut(s) | 34, 1977 |
| PstNI | CAGNNNCTG | 2 cut(s) | 122, 1090 |
| PsuI | RGATCY | 3 cut(s) | 23, 550, 751 |
| RruI | TCGCGA | 1 cut(s) | 1940 |
| RsaI | GTAC | 3 cut(s) | 126, 933, 1740 |
| RsaNI | GTAC | 3 cut(s) | 125, 932, 1739 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1560, 1965 |
| SalI | GTCGAC | 1 cut(s) | 2099 |
| SapI | GCTCTTC | 1 cut(s) | 1062 |
| SaqAI | TTAA | 6 cut(s) | 923, 966, 1125, 1196, 1506, 1746 |
| SatI | GCNGC | 3 cut(s) | 615, 1053, 1584 |
| Sau3AI | GATC | 8 cut(s) | 6, 23, 550, 663, 751, 996, 1467, 1529 |
| SchI | GAGTC | 5 cut(s) | 598, 1188, 1301, 1929, 2067 |
| ScrFI | CCNGG | 3 cut(s) | 702, 1066, 1620 |
| SduI | GDGCHC | 1 cut(s) | 831 |
| SfaNI | GCATC | 3 cut(s) | 856, 972, 1645 |
| SfuI | TTCGAA | 2 cut(s) | 132, 147 |
| SgrDI | CGTCGACG | 1 cut(s) | 2099 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1560, 1965 |
| SsiI | CCGC | 2 cut(s) | 429, 1035 |
| SspI | AATATT | 2 cut(s) | 1029, 1255 |
| SspMI | CTAG | 3 cut(s) | 483, 636, 2052 |
| StyD4I | CCNGG | 3 cut(s) | 700, 1064, 1618 |
| StyI | CCWWGG | 2 cut(s) | 278, 445 |
| TaaI | ACNGT | 4 cut(s) | 37, 124, 1235, 2018 |
| TaiI | ACGT | 4 cut(s) | 874, 1019, 1048, 1632 |
| TatI | WGTACW | 1 cut(s) | 124 |
| Tru1I | TTAA | 6 cut(s) | 923, 966, 1125, 1196, 1506, 1746 |
| Tru9I | TTAA | 6 cut(s) | 923, 966, 1125, 1196, 1506, 1746 |
| TscAI | CASTG | 4 cut(s) | 240, 1485, 1539, 1575 |
| TseFI | GTSAC | 5 cut(s) | 112, 343, 491, 645, 2040 |
| TseI | GCWGC | 3 cut(s) | 614, 1052, 1583 |
| Tsp45I | GTSAC | 5 cut(s) | 112, 343, 491, 645, 2040 |
| TspGWI | ACGGA | 6 cut(s) | 479, 709, 1263, 1376, 1412, 2118 |
| TspRI | CASTG | 4 cut(s) | 240, 1485, 1539, 1575 |
| XapI | RAATTY | 6 cut(s) | 149, 182, 263, 358, 706, 916 |
| XbaI | TCTAGA | 1 cut(s) | 635 |
| XmiI | GTMKAC | 2 cut(s) | 592, 2100 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1974 |
| XspI | CTAG | 3 cut(s) | 483, 636, 2052 |