AT3G14330

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
4778959 .. 4782452
3494 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G14330.1

Sequence Viewer

Length: 2133 bp
ATGATGATCGGGAAGTTGTGGAGATCTGTGGGAACCGTCGGAAAGTTTGATGGTCGTTACGACGGCGTGAGGACGATGGTTGGAAAAGCCTCGAACCGAGCTGGTGTTCATGTCACAGATACTGTACTTTTCGAAGAGACGAGTTTCGAATTTTCGCCTTCTCTCACTCCTGAGCTGAATGAATTTCCAATGCCTTCTTTAGATGTTATCACTCCACAAGCTTATCTTACTCCACTGGGGTCTCAGAGTATCAACCATGCTAAATTTTTACAAATCCCATGGAGACAATTTGTCTTCACAAAGCCTTTAGGTCTCTCTAAATCAACCAAACTCGACGAAGCCGTGACATTGATAGAGAATTCATCATCCTCGCCGTCCAATCTCTCCACTCCCGAAGCTTACACAGACCTTCTTCATGCTTGTATCTCCGCTAAATCACTCCACCATGGTATAAAAATATGTTCTTTGATTCTCAACAATCCTAGTCTCCGTCACAACCCCAAATTGCTAAGCAAGCTCATTACCCTATTCTCGGTTTGTCGCCGATTGGATCTTGCTCGGAAAATCTTTGACGATGTAACTGATTCGAGTCTACTTACTGAGAAAGTCTGGGCAGCTATGGCGATTGGGTATTCTAGAAACGGGTCACCAAGAGACGCTTTGATCGTCTATGTGGATATGTTGTGTAGCTTCATTGAGCCTGGGAATTTTTCGATATCCGTGGCGTTGAAAGCGTGCGTGGATTTGAAAGATCTTCGGGTTGGTAGAGGAATCCATGCCCAGATTGTGAAACGAAAGGAGAAGGTTGACCAAGTAGTGTATAATGTGCTCTTGAAGCTTTATATGGAAAGTGGCTTATTTGATGATGCACGTAAGGTGTTCGATGGAATGTCTGAGAGAAATGTTGTTACTTGGAATTCTTTAATTTCGGTACTCAGTAAGAAAGTTCGGGTTCATGAGATGTTTAATCTGTTCAGGAAGATGCAGGAAGAGATGATCGGGTTTAGTTGGGCGACGTTGACGACAATATTACCCGCTTGTTCACGTGTCGCTGCTCTTCTCACCGGGAAAGAGATTCATGCACAGATTCTGAAATCGAAAGAGAAACCTGATGTTCCATTGCTTAATTCATTGATGGATATGTATGGGAAATGTGGAGAGGTTGAGTATTCTCGGAGAGTCTTTGATGTGATGTTAACTAAGGATTTGGCTTCATGGAACATAATGCTAAACTGTTATGCAATCAACGGAAATATTGAAGAAGTGATAAATCTGTTTGAATGGATGATAGAGTCAGGCGTTGCACCAGATGGGATTACCTTTGTTGCTTTGTTATCTGGGTGTAGCGATACAGGGCTTACGGAATATGGTCTAAGTTTGTTTGAACGCATGAAAACGGAGTTCAGAGTTTCACCGGCTTTGGAGCATTATGCTTGTTTGGTTGACATCTTGGGGCGAGCTGGTAAGATCAAAGAAGCAGTGAAGGTGATAGAAACAATGCCATTTAAGCCAAGTGCGTCCATTTGGGGATCACTGCTCAACTCTTGCAGGCTTCATGGGAATGTTTCAGTGGGAGAGATTGCAGCAAAAGAGTTGTTTGTTCTTGAACCTCATAATCCAGGGAACTACGTTATGGTTTCTAACATATATGCTGATGCAAAGATGTGGGACAATGTGGATAAGATTCGAGAGATGATGAAACAAAGAGGGGTCAAAAAGGAAGCTGGTTGCAGTTGGGTACAGGTTAAAGACAAGATTCAAATCTTTGTTGCAGGAGGTGGTTATGAGTTTCGTAATTCTGATGAGTATAAGAAAGTATGGACAGAACTACAAGAAGCAATTGAAAAATCCGGTTATTCGCCTAATACGAGTGTGGTGCTTCATGATGTTGATGAAGAAACCAAAGCAAATTGGGTTTGTGGACACAGCGAGAGACTCGCGACAACCTACTCCCTAATCCACACAGGTGAAGGGGTTCCAATTAGGATTACCAAGAATCTCAGAGTATGTGCAGACTGTCATTCATGGATGAAGATTGTGTCACAAGTAACTAGGAGAGTCATAGTCCTCAGAGACACAAAACGATTCCACCATTTCGTCGACGGAATCTGCTCATGTAAAGACTACTGGTGA

Protein Analysis

710

Amino Acids

79.77

Weight (kDa)

8.3

Isoelectric Point (pI)

38.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 300 - 348 9.4e-08 PPR repeat family
PPR_2 PF13041 402 - 449 1e-11 PPR repeat family
E_motif PF20431 519 - 581 4.2e-22 E motif
DYW_deaminase PF14432 618 - 710 2.6e-39 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 592, 2100
AccII CGCG 1 cut(s) 1940
AciI CCGC 2 cut(s) 429, 1035
AclWI GGATC 2 cut(s) 558, 1537
AcsI RAATTY 6 cut(s) 149, 182, 263, 358, 706, 916
AcvI CACGTG 1 cut(s) 1046
AfaI GTAC 3 cut(s) 126, 933, 1740
AfiI CCNNNNNNNGG 1 cut(s) 532
AflIII ACRYGT 1 cut(s) 1045
AgsI TTSAA 9 cut(s) 730, 748, 835, 1259, 1280, 1385, 1607, 1760, 1844
AhdI GACNNNNNGTC 1 cut(s) 290
AjnI CCWGG 2 cut(s) 700, 1618
AleI CACNNNNGTG 1 cut(s) 1965
Alw21I GWGCWC 1 cut(s) 831
Alw26I GTCTC 8 cut(s) 131, 246, 277, 317, 491, 648, 1927, 2067
AlwI GGATC 2 cut(s) 558, 1537
AlwNI CAGNNNCTG 2 cut(s) 122, 1090
ApeKI GCWGC 3 cut(s) 614, 1052, 1583
ApoI RAATTY 6 cut(s) 149, 182, 263, 358, 706, 916
Asp700I GAANNNNTTC 1 cut(s) 1974
AsuC2I CCSGG 1 cut(s) 1066
AsuHPI GGTGA 5 cut(s) 639, 1054, 1404, 1498, 1979
AsuII TTCGAA 2 cut(s) 132, 147
BbrPI CACGTG 1 cut(s) 1046
BbsI GAAGAC 1 cut(s) 286
Bbv12I GWGCWC 1 cut(s) 831
BbvI GCAGC 3 cut(s) 626, 1039, 1595
BccI CCATC 5 cut(s) 44, 70, 878, 1129, 1304
BceAI ACGGC 3 cut(s) 79, 326, 358
BcgI CGANNNNNNTGC 2 cut(s) 1858, 1892
BciT130I CCWGG 2 cut(s) 702, 1620
BcnI CCSGG 1 cut(s) 1066
BcoDI GTCTC 8 cut(s) 131, 246, 277, 317, 491, 648, 1927, 2067
BfaI CTAG 3 cut(s) 483, 636, 2052
BglII AGATCT 2 cut(s) 23, 751
BisI GCNGC 3 cut(s) 615, 1053, 1584
BlpI GCTNAGC 1 cut(s) 509
BlsI GCNGC 3 cut(s) 616, 1054, 1585
Bme1390I CCNGG 3 cut(s) 702, 1066, 1620
BmeRI GACNNNNNGTC 1 cut(s) 290
BmiI GGNNCC 2 cut(s) 34, 1977
BmrFI CCNGG 3 cut(s) 702, 1066, 1620
BmrI ACTGGG 1 cut(s) 245
BmsI GCATC 3 cut(s) 856, 972, 1645
BmuI ACTGGG 1 cut(s) 245
BpiI GAAGAC 1 cut(s) 286
Bpu10I CCTNAGC 1 cut(s) 171
Bpu1102I GCTNAGC 1 cut(s) 509
Bpu14I TTCGAA 2 cut(s) 132, 147
BpuMI CCSGG 1 cut(s) 1066
BsaAI YACGTR 2 cut(s) 872, 1046
BsaBI GATNNNNATC 1 cut(s) 1760
BsaI GGTCTC 2 cut(s) 246, 317
BsaJI CCNNGG 5 cut(s) 278, 445, 701, 720, 1619
BsaWI WCCGGW 1 cut(s) 1850
Bsc4I CCNNNNNNNGG 1 cut(s) 532
Bse118I RCCGGY 1 cut(s) 1414
Bse1I ACTGG 2 cut(s) 240, 2132
Bse3DI GCAATG 1 cut(s) 1118
Bse8I GATNNNNATC 1 cut(s) 1760
BseBI CCWGG 2 cut(s) 702, 1620
BseDI CCNNGG 5 cut(s) 278, 445, 701, 720, 1619
BseGI GGATG 3 cut(s) 365, 1290, 2034
BseJI GATNNNNATC 1 cut(s) 1760
BseLI CCNNNNNNNGG 1 cut(s) 532
BseMI GCAATG 1 cut(s) 1118
BseMII CTCAG 7 cut(s) 162, 257, 591, 885, 949, 2014, 2083
BseNI ACTGG 2 cut(s) 240, 2132
BseXI GCAGC 3 cut(s) 626, 1039, 1595
BsgI GTGCAG 1 cut(s) 2031
Bsh1236I CGCG 1 cut(s) 1940
BsiHKAI GWGCWC 1 cut(s) 831
BsiSI CCGG 3 cut(s) 1065, 1415, 1851
BslFI GGGAC 1 cut(s) 1682
BslI CCNNNNNNNGG 1 cut(s) 532
BsmAI GTCTC 8 cut(s) 131, 246, 277, 317, 491, 648, 1927, 2067
BsmBI CGTCTC 2 cut(s) 131, 648
BsmFI GGGAC 1 cut(s) 1682
Bso31I GGTCTC 2 cut(s) 246, 317
Bsp119I TTCGAA 2 cut(s) 132, 147
Bsp1286I GDGCHC 1 cut(s) 831
Bsp143I GATC 8 cut(s) 6, 23, 550, 663, 751, 996, 1467, 1529
Bsp1720I GCTNAGC 1 cut(s) 509
Bsp19I CCATGG 2 cut(s) 278, 445
Bsp68I TCGCGA 1 cut(s) 1940
BspACI CCGC 2 cut(s) 429, 1035
BspCNI CTCAG 7 cut(s) 163, 256, 592, 886, 948, 2013, 2082
BspFNI CGCG 1 cut(s) 1940
BspHI TCATGA 2 cut(s) 955, 1882
BspLI GGNNCC 2 cut(s) 34, 1977
BspPI GGATC 2 cut(s) 558, 1537
BspQI GCTCTTC 1 cut(s) 1062
BspT104I TTCGAA 2 cut(s) 132, 147
BspTNI GGTCTC 2 cut(s) 246, 317
BsrDI GCAATG 1 cut(s) 1118
BsrFI RCCGGY 1 cut(s) 1414
BsrI ACTGG 2 cut(s) 240, 2132
BssAI RCCGGY 1 cut(s) 1414
BssECI CCNNGG 5 cut(s) 278, 445, 701, 720, 1619
BssMI GATC 8 cut(s) 6, 23, 550, 663, 751, 996, 1467, 1529
BssT1I CCWWGG 2 cut(s) 278, 445
Bst2UI CCWGG 2 cut(s) 702, 1620
Bst4CI ACNGT 4 cut(s) 37, 124, 1235, 2018
Bst6I CTCTTC 3 cut(s) 129, 984, 1062
BstBAI YACGTR 2 cut(s) 872, 1046
BstBI TTCGAA 2 cut(s) 132, 147
BstC8I GCNNGC 4 cut(s) 515, 736, 1458, 1550
BstDSI CCRYGG 3 cut(s) 278, 445, 720
BstEII GGTNACC 1 cut(s) 645
BstF5I GGATG 3 cut(s) 365, 1290, 2034
BstFNI CGCG 1 cut(s) 1940
BstKTI GATC 8 cut(s) 9, 26, 553, 666, 754, 999, 1470, 1532
BstMAI GTCTC 8 cut(s) 131, 246, 277, 317, 491, 648, 1927, 2067
BstMBI GATC 8 cut(s) 6, 23, 550, 663, 751, 996, 1467, 1529
BstMWI GCNNNNNNNGC 5 cut(s) 514, 620, 731, 835, 1507
BstNI CCWGG 2 cut(s) 702, 1620
BstPI GGTNACC 1 cut(s) 645
BstSCI CCNGG 3 cut(s) 700, 1064, 1618
BstUI CGCG 1 cut(s) 1940
BstV1I GCAGC 3 cut(s) 626, 1039, 1595
BstV2I GAAGAC 1 cut(s) 286
BstX2I RGATCY 3 cut(s) 23, 550, 751
BstYI RGATCY 3 cut(s) 23, 550, 751
BtgI CCRYGG 3 cut(s) 278, 445, 720
BtsCI GGATG 3 cut(s) 365, 1290, 2034
BtsI GCAGTG 2 cut(s) 1485, 1532
BtsIMutI CAGTG 4 cut(s) 233, 1485, 1532, 1575
BtuMI TCGCGA 1 cut(s) 1940
Cac8I GCNNGC 4 cut(s) 515, 736, 1458, 1550
CaiI CAGNNNCTG 2 cut(s) 122, 1090
CciI TCATGA 2 cut(s) 955, 1882
Cfr10I RCCGGY 1 cut(s) 1414
CseI GACGC 2 cut(s) 665, 1506
Csp6I GTAC 3 cut(s) 125, 932, 1739
CviQI GTAC 3 cut(s) 125, 932, 1739
DpnI GATC 8 cut(s) 8, 25, 552, 665, 753, 998, 1469, 1531
DpnII GATC 8 cut(s) 6, 23, 550, 663, 751, 996, 1467, 1529
DriI GACNNNNNGTC 1 cut(s) 290
Eam1104I CTCTTC 3 cut(s) 129, 984, 1062
Eam1105I GACNNNNNGTC 1 cut(s) 290
EarI CTCTTC 3 cut(s) 129, 984, 1062
Eco130I CCWWGG 2 cut(s) 278, 445
Eco31I GGTCTC 2 cut(s) 246, 317
Eco32I GATATC 1 cut(s) 717
Eco72I CACGTG 1 cut(s) 1046
Eco91I GGTNACC 1 cut(s) 645
EcoO65I GGTNACC 1 cut(s) 645
EcoRI GAATTC 2 cut(s) 358, 916
EcoRII CCWGG 2 cut(s) 700, 1618
EcoRV GATATC 1 cut(s) 717
EcoT14I CCWWGG 2 cut(s) 278, 445
ErhI CCWWGG 2 cut(s) 278, 445
Esp3I CGTCTC 2 cut(s) 131, 648
FalI AAGNNNNNCTT 4 cut(s) 210, 242, 643, 675
FaqI GGGAC 1 cut(s) 1682
FauI CCCGC 1 cut(s) 1042
FblI GTMKAC 2 cut(s) 592, 2100
Fnu4HI GCNGC 3 cut(s) 615, 1053, 1584
FokI GGATG 3 cut(s) 352, 1297, 2041
Fsp4HI GCNGC 3 cut(s) 615, 1053, 1584
FspBI CTAG 3 cut(s) 483, 636, 2052
GluI GCNGC 3 cut(s) 615, 1053, 1584
HapII CCGG 3 cut(s) 1065, 1415, 1851
HgaI GACGC 2 cut(s) 665, 1506
HincII GTYRAC 5 cut(s) 808, 1020, 1197, 1444, 2101
HindII GTYRAC 5 cut(s) 808, 1020, 1197, 1444, 2101
HindIII AAGCTT 3 cut(s) 219, 396, 836
HpaI GTTAAC 1 cut(s) 1197
HpaII CCGG 3 cut(s) 1065, 1415, 1851
HphI GGTGA 5 cut(s) 639, 1054, 1404, 1498, 1979
Hpy166II GTNNAC 8 cut(s) 593, 808, 1020, 1043, 1197, 1444, 1922, 2101
Hpy8I GTNNAC 8 cut(s) 593, 808, 1020, 1043, 1197, 1444, 1922, 2101
Hpy99I CGWCG 6 cut(s) 41, 65, 338, 1018, 2102, 2105
HpyAV CCTTC 6 cut(s) 168, 204, 419, 796, 1477, 1964
HpyCH4III ACNGT 4 cut(s) 37, 124, 1235, 2018
HpyCH4IV ACGT 4 cut(s) 871, 1016, 1045, 1629
HpyF10VI GCNNNNNNNGC 5 cut(s) 514, 620, 731, 835, 1507
HpySE526I ACGT 4 cut(s) 871, 1016, 1045, 1629
KspAI GTTAAC 1 cut(s) 1197
Kzo9I GATC 8 cut(s) 6, 23, 550, 663, 751, 996, 1467, 1529
LguI GCTCTTC 1 cut(s) 1062
LmnI GCTCC 1 cut(s) 1423
Lsp1109I GCAGC 3 cut(s) 626, 1039, 1595
LweI GCATC 3 cut(s) 856, 972, 1645
MaeI CTAG 3 cut(s) 483, 636, 2052
MaeII ACGT 4 cut(s) 871, 1016, 1045, 1629
MaeIII GTNAC 9 cut(s) 56, 112, 343, 491, 577, 645, 907, 2040, 2047
MalI GATC 8 cut(s) 8, 25, 552, 665, 753, 998, 1469, 1531
MboI GATC 8 cut(s) 6, 23, 550, 663, 751, 996, 1467, 1529
MfeI CAATTG 1 cut(s) 1839
MflI RGATCY 3 cut(s) 23, 550, 751
MhlI GDGCHC 1 cut(s) 831
MlyI GAGTC 5 cut(s) 598, 1188, 1301, 1929, 2067
MmeI TCCRAC 2 cut(s) 19, 61
MnlI CCTC 9 cut(s) 63, 100, 379, 761, 1153, 1620, 1700, 1769, 2078
MroXI GAANNNNTTC 1 cut(s) 1974
MseI TTAA 6 cut(s) 923, 966, 1125, 1196, 1506, 1746
MslI CAYNNNNRTG 2 cut(s) 1560, 1965
MspI CCGG 3 cut(s) 1065, 1415, 1851
MspR9I CCNGG 3 cut(s) 702, 1066, 1620
MunI CAATTG 1 cut(s) 1839
MvaI CCWGG 2 cut(s) 702, 1620
MvnI CGCG 1 cut(s) 1940
MwoI GCNNNNNNNGC 5 cut(s) 514, 620, 731, 835, 1507
NciI CCSGG 1 cut(s) 1066
NcoI CCATGG 2 cut(s) 278, 445
NdeII GATC 8 cut(s) 6, 23, 550, 663, 751, 996, 1467, 1529
NlaIV GGNNCC 2 cut(s) 34, 1977
NmuCI GTSAC 5 cut(s) 112, 343, 491, 645, 2040
NruI TCGCGA 1 cut(s) 1940
NspV TTCGAA 2 cut(s) 132, 147
OliI CACNNNNGTG 1 cut(s) 1965
PagI TCATGA 2 cut(s) 955, 1882
PciSI GCTCTTC 1 cut(s) 1062
PcsI WCGNNNNNNNCGW 3 cut(s) 339, 663, 1865
PdmI GAANNNNTTC 1 cut(s) 1974
PkrI GCNGC 3 cut(s) 616, 1054, 1585
PleI GAGTC 5 cut(s) 597, 1187, 1300, 1929, 2066
PmaCI CACGTG 1 cut(s) 1046
PmlI CACGTG 1 cut(s) 1046
PpsI GAGTC 5 cut(s) 597, 1187, 1300, 1929, 2066
Ppu21I YACGTR 2 cut(s) 872, 1046
Psp6I CCWGG 2 cut(s) 700, 1618
PspCI CACGTG 1 cut(s) 1046
PspEI GGTNACC 1 cut(s) 645
PspGI CCWGG 2 cut(s) 700, 1618
PspN4I GGNNCC 2 cut(s) 34, 1977
PstNI CAGNNNCTG 2 cut(s) 122, 1090
PsuI RGATCY 3 cut(s) 23, 550, 751
RruI TCGCGA 1 cut(s) 1940
RsaI GTAC 3 cut(s) 126, 933, 1740
RsaNI GTAC 3 cut(s) 125, 932, 1739
RseI CAYNNNNRTG 2 cut(s) 1560, 1965
SalI GTCGAC 1 cut(s) 2099
SapI GCTCTTC 1 cut(s) 1062
SaqAI TTAA 6 cut(s) 923, 966, 1125, 1196, 1506, 1746
SatI GCNGC 3 cut(s) 615, 1053, 1584
Sau3AI GATC 8 cut(s) 6, 23, 550, 663, 751, 996, 1467, 1529
SchI GAGTC 5 cut(s) 598, 1188, 1301, 1929, 2067
ScrFI CCNGG 3 cut(s) 702, 1066, 1620
SduI GDGCHC 1 cut(s) 831
SfaNI GCATC 3 cut(s) 856, 972, 1645
SfuI TTCGAA 2 cut(s) 132, 147
SgrDI CGTCGACG 1 cut(s) 2099
SmiMI CAYNNNNRTG 2 cut(s) 1560, 1965
SsiI CCGC 2 cut(s) 429, 1035
SspI AATATT 2 cut(s) 1029, 1255
SspMI CTAG 3 cut(s) 483, 636, 2052
StyD4I CCNGG 3 cut(s) 700, 1064, 1618
StyI CCWWGG 2 cut(s) 278, 445
TaaI ACNGT 4 cut(s) 37, 124, 1235, 2018
TaiI ACGT 4 cut(s) 874, 1019, 1048, 1632
TatI WGTACW 1 cut(s) 124
Tru1I TTAA 6 cut(s) 923, 966, 1125, 1196, 1506, 1746
Tru9I TTAA 6 cut(s) 923, 966, 1125, 1196, 1506, 1746
TscAI CASTG 4 cut(s) 240, 1485, 1539, 1575
TseFI GTSAC 5 cut(s) 112, 343, 491, 645, 2040
TseI GCWGC 3 cut(s) 614, 1052, 1583
Tsp45I GTSAC 5 cut(s) 112, 343, 491, 645, 2040
TspGWI ACGGA 6 cut(s) 479, 709, 1263, 1376, 1412, 2118
TspRI CASTG 4 cut(s) 240, 1485, 1539, 1575
XapI RAATTY 6 cut(s) 149, 182, 263, 358, 706, 916
XbaI TCTAGA 1 cut(s) 635
XmiI GTMKAC 2 cut(s) 592, 2100
XmnI GAANNNNTTC 1 cut(s) 1974
XspI CTAG 3 cut(s) 483, 636, 2052
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.