Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008694.1

Orthogroup ID

OG0011933

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 280

Gene Structure 279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008694.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

atgattggcgccatttctgtgtcaactagcacaactgtgacttgttcagtctccggcatttctcaaaaacccagcaagcctctaactccctcaactctcaaatggcttgcaaaatccggcaaactagaagaggccattcgcctgatcgaagcctcaccctccaaattgacggccaccgagtccgacatcgaggcctactccctcctcctccacacctgtatctcccaaaaatccttagagcatggccaaaggctttacctacagtttcttgtctcagaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016553 GO:0016554 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

93

Amino Acids

10.04

Weight (kDa)

7.79

Isoelectric Point (pI)

37.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14330
fragaria_vesca	FvH4_1g28620
malus_domestica	MD17G1262400.v1.1
prunus_persica	Prupe.3G163800_v2.0.a1
pyrus_communis	pycom17g26230
rosa_chinensis	RchiOBHm_Chr3g0492571
rosa_laevigata	RLG00000022759
rosa_multiflora	Rmu_sc0000831.1_g000061 Rmu_sc0008694.1_g000001
rosa_roxburghii	Rroxscaffold_4G00325000 Rroxscaffold_4G00325010
rosa_rugosa	Rorug03G0254500
rosa_samantha	Rh3BG340900 Rh3BG341000 Rh3BG341100 Rh3CG338400 Rh3DG340200 Rh3DG340300 Rh5BG302200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	8
AcoI	YGGCCR	2 cut(s)	171, 244
AcyI	GRCGYC	1 cut(s)	9
AleI	CACNNNNGTG	1 cut(s)	35
Alw26I	GTCTC	1 cut(s)	55
AoxI	GGCC	4 cut(s)	132, 171, 192, 244
AspLEI	GCGC	1 cut(s)	11
AsuHPI	GGTGA	1 cut(s)	147
BaeI	ACNNNNGTAYC	2 cut(s)	202, 235
BalI	TGGCCA	1 cut(s)	246
BanI	GGYRCC	1 cut(s)	8
BceAI	ACGGC	1 cut(s)	186
BcoDI	GTCTC	1 cut(s)	55
BfaI	CTAG	2 cut(s)	27, 125
BfmI	CTRYAG	1 cut(s)	260
BfoI	RGCGCY	1 cut(s)	12
BmiI	GGNNCC	1 cut(s)	10
BplI	GAGNNNNNCTC	2 cut(s)	182, 214
BsaHI	GRCGYC	1 cut(s)	9
BseRI	GAGGAG	2 cut(s)	194, 197
BseYI	CCCAGC	1 cut(s)	71
BshFI	GGCC	4 cut(s)	134, 173, 194, 246
BshNI	GGYRCC	1 cut(s)	8
BsiSI	CCGG	2 cut(s)	54, 117
BsmAI	GTCTC	1 cut(s)	55
BsnI	GGCC	4 cut(s)	134, 173, 194, 246
Bsp143I	GATC	1 cut(s)	144
BspANI	GGCC	4 cut(s)	134, 173, 194, 246
BspLI	GGNNCC	1 cut(s)	10
BspT107I	GGYRCC	1 cut(s)	8
BssMI	GATC	1 cut(s)	144
BssNI	GRCGYC	1 cut(s)	9
Bst4CI	ACNGT	2 cut(s)	37, 264
Bst6I	CTCTTC	1 cut(s)	123
BstACI	GRCGYC	1 cut(s)	9
BstC8I	GCNNGC	2 cut(s)	77, 108
BstDEI	CTNAG	2 cut(s)	235, 274
BstH2I	RGCGCY	1 cut(s)	12
BstHHI	GCGC	1 cut(s)	11
BstKTI	GATC	1 cut(s)	147
BstMAI	GTCTC	1 cut(s)	55
BstMBI	GATC	1 cut(s)	144
BstSFI	CTRYAG	1 cut(s)	260
BsuRI	GGCC	4 cut(s)	134, 173, 194, 246
Cac8I	GCNNGC	2 cut(s)	77, 108
CfoI	GCGC	1 cut(s)	11
CviAII	CATG	1 cut(s)	242
CviJI	RGCY	8 cut(s)	79, 106, 134, 152, 173, 194, 246, 253
CviKI_1	RGCY	8 cut(s)	79, 106, 134, 152, 173, 194, 246, 253
DdeI	CTNAG	2 cut(s)	235, 274
DinI	GGCGCC	1 cut(s)	10
DpnI	GATC	1 cut(s)	146
DpnII	GATC	1 cut(s)	144
EaeI	YGGCCR	2 cut(s)	171, 244
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
Eco147I	AGGCCT	1 cut(s)	194
EgeI	GGCGCC	1 cut(s)	10
EheI	GGCGCC	1 cut(s)	10
FaeI	CATG	1 cut(s)	245
FaiI	YATR	1 cut(s)	243
FatI	CATG	1 cut(s)	241
FspBI	CTAG	2 cut(s)	27, 125
GlaI	GCGC	1 cut(s)	10
GsaI	CCCAGC	1 cut(s)	75
HaeII	RGCGCY	1 cut(s)	12
HaeIII	GGCC	4 cut(s)	134, 173, 194, 246
HapII	CCGG	2 cut(s)	54, 117
HhaI	GCGC	1 cut(s)	11
Hin1I	GRCGYC	1 cut(s)	9
Hin1II	CATG	1 cut(s)	245
Hin6I	GCGC	1 cut(s)	9
HinP1I	GCGC	1 cut(s)	9
HincII	GTYRAC	1 cut(s)	24
HindII	GTYRAC	1 cut(s)	24
HinfI	GANTC	1 cut(s)	179
HpaII	CCGG	2 cut(s)	54, 117
HphI	GGTGA	1 cut(s)	147
Hpy166II	GTNNAC	1 cut(s)	24
Hpy188I	TCNGA	2 cut(s)	184, 277
Hpy8I	GTNNAC	1 cut(s)	24
HpyCH4III	ACNGT	2 cut(s)	37, 264
HpyCH4V	TGCA	1 cut(s)	110
HpyF3I	CTNAG	2 cut(s)	235, 274
Hsp92I	GRCGYC	1 cut(s)	9
Hsp92II	CATG	1 cut(s)	245
HspAI	GCGC	1 cut(s)	9
KasI	GGCGCC	1 cut(s)	8
Kzo9I	GATC	1 cut(s)	144
LpnPI	CCDG	5 cut(s)	67, 85, 130, 155, 229
MaeI	CTAG	2 cut(s)	27, 125
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	1 cut(s)	146
MboI	GATC	1 cut(s)	144
MboII	GAAGA	1 cut(s)	140
MlsI	TGGCCA	1 cut(s)	246
MluCI	AATT	1 cut(s)	164
MluNI	TGGCCA	1 cut(s)	246
Mly113I	GGCGCC	1 cut(s)	9
MlyI	GAGTC	1 cut(s)	188
MmeI	TCCRAC	1 cut(s)	207
MnlI	CCTC	9 cut(s)	90, 100, 124, 163, 169, 184, 212, 215, 218
Mox20I	TGGCCA	1 cut(s)	246
MscI	TGGCCA	1 cut(s)	246
MslI	CAYNNNNRTG	2 cut(s)	17, 35
Msp20I	TGGCCA	1 cut(s)	246
MspI	CCGG	2 cut(s)	54, 117
NarI	GGCGCC	1 cut(s)	9
NdeII	GATC	1 cut(s)	144
NlaIII	CATG	1 cut(s)	245
NlaIV	GGNNCC	1 cut(s)	10
NmuCI	GTSAC	1 cut(s)	37
OliI	CACNNNNGTG	1 cut(s)	35
PceI	AGGCCT	1 cut(s)	194
PleI	GAGTC	1 cut(s)	187
PluTI	GGCGCC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	187
PspFI	CCCAGC	1 cut(s)	71
PspN4I	GGNNCC	1 cut(s)	10
RseI	CAYNNNNRTG	2 cut(s)	17, 35
Sau3AI	GATC	1 cut(s)	144
SchI	GAGTC	1 cut(s)	188
SetI	ASST	2 cut(s)	218, 261
SfcI	CTRYAG	1 cut(s)	260
SfoI	GGCGCC	1 cut(s)	10
SmiMI	CAYNNNNRTG	2 cut(s)	17, 35
Sse9I	AATT	1 cut(s)	164
SseBI	AGGCCT	1 cut(s)	194
SspDI	GGCGCC	1 cut(s)	8
SspMI	CTAG	2 cut(s)	27, 125
StuI	AGGCCT	1 cut(s)	194
TaaI	ACNGT	2 cut(s)	37, 264
TaqI	TCGA	2 cut(s)	147, 189
TasI	AATT	1 cut(s)	164
TseFI	GTSAC	1 cut(s)	37
Tsp45I	GTSAC	1 cut(s)	37
XspI	CTAG	2 cut(s)	27, 125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.