Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0011933

Physical Location & Seq

Genomic Coordinates Reverse (-)

36595496 .. 36595900

Gene Structure 405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG341100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGATTGGCGCCATTTCTGTGTCAACTAGCATAACTTTGACTTGTTCAGTCTCCGGCATTTCTCAAAAACCCAGCAAGCCTCTAACTCCCTCAACTCTCAAATGGCTTGCAAAATCCGGCAAACTAGAAGAGGCCATTCGCCTGATCGAAGCCTCACCCTCCAAATTGACGGCCACCGAGTCCGACACCGAGGCCTACTCCCTCCTCCTCCACACCTGTATCTCCCAAAAATCCTTGGAGCATGAACAAAGGCTTTACCTACAGTTTCTTGTCTCAGAAGACAAAGTGAACCACAGCCTCGTCAACAATCCCACCTTGAAAACCAAGCTCATTACTCTCTACTCTGTCTGCGGCCGAGTTGACGACGCCCACTCTGTTTTCGTCAACGGTGGACACGCGCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016553 GO:0016554 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

134

Amino Acids

14.52

Weight (kDa)

7.76

Isoelectric Point (pI)

27.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14330
fragaria_vesca	FvH4_1g28620
malus_domestica	MD17G1262400.v1.1
prunus_persica	Prupe.3G163800_v2.0.a1
pyrus_communis	pycom17g26230
rosa_chinensis	RchiOBHm_Chr3g0492571
rosa_laevigata	RLG00000022759
rosa_multiflora	Rmu_sc0000831.1_g000061 Rmu_sc0008694.1_g000001
rosa_roxburghii	Rroxscaffold_4G00325000 Rroxscaffold_4G00325010
rosa_rugosa	Rorug03G0254500
rosa_samantha	Rh3BG340900 Rh3BG341000 Rh3BG341100 Rh3CG338400 Rh3DG340200 Rh3DG340300 Rh5BG302200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	8
AccII	CGCG	1 cut(s)	398
AciI	CCGC	1 cut(s)	351
AcoI	YGGCCR	2 cut(s)	171, 352
AcyI	GRCGYC	2 cut(s)	9, 366
AgsI	TTSAA	1 cut(s)	319
AluBI	AGCT	1 cut(s)	328
AluI	AGCT	1 cut(s)	328
Alw26I	GTCTC	2 cut(s)	55, 277
AoxI	GGCC	4 cut(s)	132, 171, 192, 352
AspLEI	GCGC	2 cut(s)	11, 400
AsuHPI	GGTGA	1 cut(s)	147
BaeI	ACNNNNGTAYC	2 cut(s)	202, 235
BanI	GGYRCC	1 cut(s)	8
BbsI	GAAGAC	1 cut(s)	285
BceAI	ACGGC	1 cut(s)	186
BcoDI	GTCTC	2 cut(s)	55, 277
BfaI	CTAG	3 cut(s)	27, 125, 403
BfmI	CTRYAG	1 cut(s)	260
BfoI	RGCGCY	1 cut(s)	12
BisI	GCNGC	1 cut(s)	352
BlsI	GCNGC	1 cut(s)	353
BmiI	GGNNCC	1 cut(s)	10
BpiI	GAAGAC	1 cut(s)	285
BplI	GAGNNNNNCTC	2 cut(s)	182, 214
BsaHI	GRCGYC	2 cut(s)	9, 366
BsaJI	CCNNGG	2 cut(s)	189, 234
BseDI	CCNNGG	2 cut(s)	189, 234
BseMII	CTCAG	1 cut(s)	288
BseRI	GAGGAG	2 cut(s)	194, 197
BseX3I	CGGCCG	1 cut(s)	352
BseYI	CCCAGC	1 cut(s)	71
Bsh1236I	CGCG	1 cut(s)	398
Bsh1285I	CGRYCG	1 cut(s)	355
BshFI	GGCC	4 cut(s)	134, 173, 194, 354
BshNI	GGYRCC	1 cut(s)	8
BsiEI	CGRYCG	1 cut(s)	355
BsiSI	CCGG	2 cut(s)	54, 117
BsmAI	GTCTC	2 cut(s)	55, 277
BsnI	GGCC	4 cut(s)	134, 173, 194, 354
Bsp143I	GATC	1 cut(s)	144
BspACI	CCGC	1 cut(s)	351
BspANI	GGCC	4 cut(s)	134, 173, 194, 354
BspCNI	CTCAG	1 cut(s)	287
BspFNI	CGCG	1 cut(s)	398
BspLI	GGNNCC	1 cut(s)	10
BspT107I	GGYRCC	1 cut(s)	8
BssECI	CCNNGG	2 cut(s)	189, 234
BssMI	GATC	1 cut(s)	144
BssNI	GRCGYC	2 cut(s)	9, 366
BssT1I	CCWWGG	1 cut(s)	234
Bst4CI	ACNGT	2 cut(s)	264, 389
Bst6I	CTCTTC	1 cut(s)	123
BstACI	GRCGYC	2 cut(s)	9, 366
BstC8I	GCNNGC	2 cut(s)	77, 108
BstDEI	CTNAG	1 cut(s)	274
BstFNI	CGCG	1 cut(s)	398
BstH2I	RGCGCY	1 cut(s)	12
BstHHI	GCGC	2 cut(s)	11, 400
BstKTI	GATC	1 cut(s)	147
BstMAI	GTCTC	2 cut(s)	55, 277
BstMBI	GATC	1 cut(s)	144
BstMCI	CGRYCG	1 cut(s)	355
BstSFI	CTRYAG	1 cut(s)	260
BstUI	CGCG	1 cut(s)	398
BstV2I	GAAGAC	1 cut(s)	285
BstZI	CGGCCG	1 cut(s)	352
BsuRI	GGCC	4 cut(s)	134, 173, 194, 354
Cac8I	GCNNGC	2 cut(s)	77, 108
CfoI	GCGC	2 cut(s)	11, 400
CseI	GACGC	1 cut(s)	374
CviAII	CATG	1 cut(s)	242
DdeI	CTNAG	1 cut(s)	274
DinI	GGCGCC	1 cut(s)	10
DpnI	GATC	1 cut(s)	146
DpnII	GATC	1 cut(s)	144
EaeI	YGGCCR	2 cut(s)	171, 352
EagI	CGGCCG	1 cut(s)	352
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
EclXI	CGGCCG	1 cut(s)	352
Eco130I	CCWWGG	1 cut(s)	234
Eco147I	AGGCCT	1 cut(s)	194
Eco52I	CGGCCG	1 cut(s)	352
EcoT14I	CCWWGG	1 cut(s)	234
EgeI	GGCGCC	1 cut(s)	10
EheI	GGCGCC	1 cut(s)	10
ErhI	CCWWGG	1 cut(s)	234
FaeI	CATG	1 cut(s)	245
FaiI	YATR	2 cut(s)	32, 243
FatI	CATG	1 cut(s)	241
Fnu4HI	GCNGC	1 cut(s)	352
Fsp4HI	GCNGC	1 cut(s)	352
FspBI	CTAG	3 cut(s)	27, 125, 403
GlaI	GCGC	2 cut(s)	10, 399
GluI	GCNGC	1 cut(s)	352
GsaI	CCCAGC	1 cut(s)	75
HaeII	RGCGCY	1 cut(s)	12
HaeIII	GGCC	4 cut(s)	134, 173, 194, 354
HapII	CCGG	2 cut(s)	54, 117
HgaI	GACGC	1 cut(s)	374
HhaI	GCGC	2 cut(s)	11, 400
Hin1I	GRCGYC	2 cut(s)	9, 366
Hin1II	CATG	1 cut(s)	245
Hin6I	GCGC	2 cut(s)	9, 398
HinP1I	GCGC	2 cut(s)	9, 398
HincII	GTYRAC	4 cut(s)	24, 304, 361, 385
HindII	GTYRAC	4 cut(s)	24, 304, 361, 385
HinfI	GANTC	1 cut(s)	179
HpaII	CCGG	2 cut(s)	54, 117
HphI	GGTGA	1 cut(s)	147
Hpy166II	GTNNAC	6 cut(s)	24, 289, 304, 361, 385, 392
Hpy188I	TCNGA	2 cut(s)	184, 277
Hpy8I	GTNNAC	6 cut(s)	24, 289, 304, 361, 385, 392
Hpy99I	CGWCG	1 cut(s)	368
HpyCH4III	ACNGT	2 cut(s)	264, 389
HpyCH4V	TGCA	1 cut(s)	110
HpyF3I	CTNAG	1 cut(s)	274
Hsp92I	GRCGYC	2 cut(s)	9, 366
Hsp92II	CATG	1 cut(s)	245
HspAI	GCGC	2 cut(s)	9, 398
KasI	GGCGCC	1 cut(s)	8
Kzo9I	GATC	1 cut(s)	144
LmnI	GCTCC	1 cut(s)	238
LpnPI	CCDG	5 cut(s)	67, 85, 130, 155, 229
MaeI	CTAG	3 cut(s)	27, 125, 403
MalI	GATC	1 cut(s)	146
MboI	GATC	1 cut(s)	144
MboII	GAAGA	2 cut(s)	140, 290
MluCI	AATT	1 cut(s)	164
Mly113I	GGCGCC	1 cut(s)	9
MlyI	GAGTC	1 cut(s)	188
MmeI	TCCRAC	1 cut(s)	207
MslI	CAYNNNNRTG	1 cut(s)	17
MspI	CCGG	2 cut(s)	54, 117
MvnI	CGCG	1 cut(s)	398
NarI	GGCGCC	1 cut(s)	9
NdeII	GATC	1 cut(s)	144
NlaIII	CATG	1 cut(s)	245
NlaIV	GGNNCC	1 cut(s)	10
NmeAIII	GCCGAG	1 cut(s)	380
PceI	AGGCCT	1 cut(s)	194
PkrI	GCNGC	1 cut(s)	353
PleI	GAGTC	1 cut(s)	187
PluTI	GGCGCC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	187
PspFI	CCCAGC	1 cut(s)	71
PspN4I	GGNNCC	1 cut(s)	10
RseI	CAYNNNNRTG	1 cut(s)	17
SatI	GCNGC	1 cut(s)	352
Sau3AI	GATC	1 cut(s)	144
SchI	GAGTC	1 cut(s)	188
SetI	ASST	4 cut(s)	218, 261, 317, 330
SfcI	CTRYAG	1 cut(s)	260
SfoI	GGCGCC	1 cut(s)	10
SmiMI	CAYNNNNRTG	1 cut(s)	17
Sse9I	AATT	1 cut(s)	164
SseBI	AGGCCT	1 cut(s)	194
SsiI	CCGC	1 cut(s)	351
SspDI	GGCGCC	1 cut(s)	8
SspMI	CTAG	3 cut(s)	27, 125, 403
StuI	AGGCCT	1 cut(s)	194
StyI	CCWWGG	1 cut(s)	234
TaaI	ACNGT	2 cut(s)	264, 389
TaqI	TCGA	1 cut(s)	147
TasI	AATT	1 cut(s)	164
TauI	GCSGC	1 cut(s)	354
TspDTI	ATGAA	1 cut(s)	258
XspI	CTAG	3 cut(s)	27, 125, 403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.