Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0011933

Physical Location & Seq

Genomic Coordinates Reverse (-)

36595256 .. 36595477

Gene Structure 222 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG341000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGGCCATTGCGTATTTGAGAAATGGCTACTTGGAGAAAGCGTTGCTCTTATATTGTGAAATGTTGTGCCAGCTAGTCTGGCCGGGGAATTTCGCATTCTCAATGGCGTTGAAGGCCTGTGCAGAGTTGTCTGAGCTTAGAGTCGGGAGAACCGTCCATGCCCAGATTGTGAAATCCAATGAAAAGCCGGATCAAGTGGTCAATAATGCTCTTCTGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016553 GO:0016554 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

73

Amino Acids

8.23

Weight (kDa)

8.55

Isoelectric Point (pI)

17.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14330
fragaria_vesca	FvH4_1g28620
malus_domestica	MD17G1262400.v1.1
prunus_persica	Prupe.3G163800_v2.0.a1
pyrus_communis	pycom17g26230
rosa_chinensis	RchiOBHm_Chr3g0492571
rosa_laevigata	RLG00000022759
rosa_multiflora	Rmu_sc0000831.1_g000061 Rmu_sc0008694.1_g000001
rosa_roxburghii	Rroxscaffold_4G00325000 Rroxscaffold_4G00325010
rosa_rugosa	Rorug03G0254500
rosa_samantha	Rh3BG340900 Rh3BG341000 Rh3BG341100 Rh3CG338400 Rh3DG340200 Rh3DG340300 Rh5BG302200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	198
AcoI	YGGCCR	2 cut(s)	3, 80
AcsI	RAATTY	1 cut(s)	88
AgsI	TTSAA	1 cut(s)	112
AluBI	AGCT	2 cut(s)	73, 136
AluI	AGCT	2 cut(s)	73, 136
AlwI	GGATC	1 cut(s)	198
AoxI	GGCC	3 cut(s)	3, 80, 114
ApoI	RAATTY	1 cut(s)	88
AsuC2I	CCSGG	1 cut(s)	84
BalI	TGGCCA	1 cut(s)	5
BcnI	CCSGG	1 cut(s)	84
BfaI	CTAG	1 cut(s)	74
Bme1390I	CCNGG	1 cut(s)	84
BmrFI	CCNGG	1 cut(s)	84
BpuMI	CCSGG	1 cut(s)	84
BsaJI	CCNNGG	1 cut(s)	83
BsaXI	ACNNNNNCTCC	2 cut(s)	26, 56
Bse3DI	GCAATG	1 cut(s)	6
BseDI	CCNNGG	1 cut(s)	83
BseMI	GCAATG	1 cut(s)	6
BseMII	CTCAG	2 cut(s)	123, 206
BsgI	GTGCAG	1 cut(s)	141
BshFI	GGCC	3 cut(s)	5, 82, 116
BsiSI	CCGG	2 cut(s)	83, 188
BsmI	GAATGC	1 cut(s)	95
BsnI	GGCC	3 cut(s)	5, 82, 116
Bsp143I	GATC	1 cut(s)	190
BspANI	GGCC	3 cut(s)	5, 82, 116
BspCNI	CTCAG	2 cut(s)	124, 207
BspPI	GGATC	1 cut(s)	198
BspQI	GCTCTTC	1 cut(s)	216
BsrDI	GCAATG	1 cut(s)	6
BssECI	CCNNGG	1 cut(s)	83
BssMI	GATC	1 cut(s)	190
Bst4CI	ACNGT	1 cut(s)	154
Bst6I	CTCTTC	1 cut(s)	216
BstC8I	GCNNGC	1 cut(s)	71
BstDEI	CTNAG	3 cut(s)	132, 137, 215
BstKTI	GATC	1 cut(s)	193
BstMBI	GATC	1 cut(s)	190
BstMWI	GCNNNNNNNGC	2 cut(s)	79, 113
BstSCI	CCNGG	1 cut(s)	82
BsuRI	GGCC	3 cut(s)	5, 82, 116
Cac8I	GCNNGC	1 cut(s)	71
CviAII	CATG	1 cut(s)	158
CviJI	RGCY	7 cut(s)	5, 27, 73, 82, 116, 136, 187
CviKI_1	RGCY	7 cut(s)	5, 27, 73, 82, 116, 136, 187
DdeI	CTNAG	3 cut(s)	132, 137, 215
DpnI	GATC	1 cut(s)	192
DpnII	GATC	1 cut(s)	190
EaeI	YGGCCR	2 cut(s)	3, 80
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Eco147I	AGGCCT	1 cut(s)	116
FaeI	CATG	1 cut(s)	161
FaiI	YATR	2 cut(s)	52, 159
FatI	CATG	1 cut(s)	157
FspBI	CTAG	1 cut(s)	74
HaeIII	GGCC	3 cut(s)	5, 82, 116
HapII	CCGG	2 cut(s)	83, 188
Hin1II	CATG	1 cut(s)	161
HinfI	GANTC	1 cut(s)	141
HpaII	CCGG	2 cut(s)	83, 188
Hpy188I	TCNGA	2 cut(s)	133, 216
Hpy188III	TCNNGA	1 cut(s)	145
HpyAV	CCTTC	1 cut(s)	106
HpyCH4III	ACNGT	1 cut(s)	154
HpyCH4V	TGCA	1 cut(s)	122
HpyF10VI	GCNNNNNNNGC	2 cut(s)	79, 113
HpyF3I	CTNAG	3 cut(s)	132, 137, 215
Hsp92II	CATG	1 cut(s)	161
Kzo9I	GATC	1 cut(s)	190
LguI	GCTCTTC	1 cut(s)	216
LpnPI	CCDG	6 cut(s)	64, 83, 96, 130, 176, 201
MaeI	CTAG	1 cut(s)	74
MalI	GATC	1 cut(s)	192
MboI	GATC	1 cut(s)	190
MboII	GAAGA	1 cut(s)	203
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	88
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	150
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	83, 188
MspR9I	CCNGG	1 cut(s)	84
Mva1269I	GAATGC	1 cut(s)	95
MwoI	GCNNNNNNNGC	2 cut(s)	79, 113
NciI	CCSGG	1 cut(s)	84
NdeII	GATC	1 cut(s)	190
NlaIII	CATG	1 cut(s)	161
PceI	AGGCCT	1 cut(s)	116
PciSI	GCTCTTC	1 cut(s)	216
PcsI	WCGNNNNNNNCGW	1 cut(s)	150
PctI	GAATGC	1 cut(s)	95
PleI	GAGTC	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	149
SapI	GCTCTTC	1 cut(s)	216
Sau3AI	GATC	1 cut(s)	190
SchI	GAGTC	1 cut(s)	150
ScrFI	CCNGG	1 cut(s)	84
SetI	ASST	2 cut(s)	75, 138
Sse9I	AATT	1 cut(s)	88
SseBI	AGGCCT	1 cut(s)	116
SspMI	CTAG	1 cut(s)	74
StuI	AGGCCT	1 cut(s)	116
StyD4I	CCNGG	1 cut(s)	82
TaaI	ACNGT	1 cut(s)	154
TasI	AATT	1 cut(s)	88
TspDTI	ATGAA	1 cut(s)	195
XapI	RAATTY	1 cut(s)	88
XspI	CTAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.