Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011933

Physical Location & Seq

Genomic Coordinates Reverse (-)

39351059 .. 39352827

Gene Structure 1769 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45546

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGATGGGTGTCGTTACAGAGAGATGGGAGTGCATGCCCTGATCATTTTTGGGTGTTTGTCTCGGTGCTGCCAGGTCCCGGTATGGGCCAAAAATTTGTCGATTGAGAGGACAGCGATACCGGTATGTAGGCTTGGTGTAAATTGGTTTGTAAGCTTGGCACAGCGACAGCAAGAAACAAACTTTCGTGATTCGTTGAGGAGTCGCGAGTCGGGGCGACTCAGTAGACCGATACTGAAAACCAAGTGTCCTGATGTCCCTATATTGAACTTACTCATGGACATGTATGCAAAATGTGGAGCAATTGATTACTGTAAGAGGGTGTTTGGCAATATGCACTGTAAAGATTTGACATCTTGGAATACTGTTCTTACAGGGTATGTGGTCACTGGCACTGGCGGGCGGACGCACATGGTAGAGTCTGGAATCAGACCAGATGGAGTGACCTTTATAGCTCTGTTATCTGGCTGTAGCCATGCGGGGCTTACTGACCAAGGACGGAGATTGTTTGATAAAATGAAGTTGGGTTATGGTATATCCCCAACTGTTGAGCATTATGCTTGTCTTGTAGATCTTTTGGGAAGAGCTGGTAGAATTGAGGAGGCCTTAGATGTAGTAGAAAACATGCCTGTGAAGCCGTCTGGAAGCATATGGGGTTCATTACTCAACTCATGCCGGCTCCAAGGCAAAGTTGCTCTTGCGGAGCGTGCTGCAATGGAGTTGTTTGAGCTTGAACCTAACAATCCCGGGAACTATGTGGTGCTCTCAAATGTTTATGCAAAATGGAGGGATGTGGGGGGGGGGGGGGGCGGGGGCGGGGGGCAGGCTGGATGCAGTTGGTTGCAAATAGGGAGTCGGATCCACACGTTTGTAGTGGGTGGGGGGTTTTCAGTTGAGTTTAAGAAAGTTTGGAATGAATTGACGGATGCTATGGAAGAGGTTGGGTATATTCCTGACACAAGTGTTGTCTTACATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016553 GO:0016554 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

326

Amino Acids

35.71

Weight (kDa)

8.2

Isoelectric Point (pI)

41.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	138 - 194	1.8e-06	Pentatricopeptide repeat domain
E_motif	PF20431	231 - 263	2.3e-08	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14330
fragaria_vesca	FvH4_1g28620
malus_domestica	MD17G1262400.v1.1
prunus_persica	Prupe.3G163800_v2.0.a1
pyrus_communis	pycom17g26230
rosa_chinensis	RchiOBHm_Chr3g0492571
rosa_laevigata	RLG00000022759
rosa_multiflora	Rmu_sc0000831.1_g000061 Rmu_sc0008694.1_g000001
rosa_roxburghii	Rroxscaffold_4G00325000 Rroxscaffold_4G00325010
rosa_rugosa	Rorug03G0254500
rosa_samantha	Rh3BG340900 Rh3BG341000 Rh3BG341100 Rh3CG338400 Rh3DG340200 Rh3DG340300 Rh5BG302200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	226
AccII	CGCG	1 cut(s)	207
AciI	CCGC	6 cut(s)	399, 403, 479, 701, 810, 816
AclWI	GGATC	2 cut(s)	853, 866
AcsI	RAATTY	1 cut(s)	94
AfiI	CCNNNNNNNGG	2 cut(s)	79, 85
AflIII	ACRYGT	2 cut(s)	282, 864
AgeI	ACCGGT	1 cut(s)	121
AgsI	TTSAA	2 cut(s)	268, 734
AjnI	CCWGG	1 cut(s)	72
AluBI	AGCT	4 cut(s)	156, 455, 587, 730
AluI	AGCT	4 cut(s)	156, 455, 587, 730
Alw21I	GWGCWC	1 cut(s)	765
Alw26I	GTCTC	1 cut(s)	66
AlwI	GGATC	2 cut(s)	853, 866
Ama87I	CYCGRG	1 cut(s)	746
AoxI	GGCC	2 cut(s)	87, 603
ApeKI	GCWGC	2 cut(s)	69, 710
ApoI	RAATTY	1 cut(s)	94
ArsI	GACNNNNNNTTYG	2 cut(s)	838, 870
AsiGI	ACCGGT	1 cut(s)	121
AspS9I	GGNCC	2 cut(s)	76, 87
AsuC2I	CCSGG	3 cut(s)	80, 747, 748
AvaI	CYCGRG	1 cut(s)	746
AvaII	GGWCC	1 cut(s)	76
BamHI	GGATCC	1 cut(s)	858
Bbv12I	GWGCWC	1 cut(s)	765
BbvI	GCAGC	2 cut(s)	56, 697
BccI	CCATC	2 cut(s)	19, 431
BceAI	ACGGC	1 cut(s)	622
BciT130I	CCWGG	1 cut(s)	74
BclI	TGATCA	1 cut(s)	42
BcnI	CCSGG	3 cut(s)	80, 747, 748
BcoDI	GTCTC	1 cut(s)	66
BfmI	CTRYAG	1 cut(s)	469
BglII	AGATCT	1 cut(s)	571
BisI	GCNGC	2 cut(s)	70, 711
BlsI	GCNGC	2 cut(s)	71, 712
Bme1390I	CCNGG	4 cut(s)	74, 80, 747, 748
Bme18I	GGWCC	1 cut(s)	76
BmeT110I	CYCGRG	1 cut(s)	746
BmgT120I	GGNCC	2 cut(s)	76, 87
BmiI	GGNNCC	3 cut(s)	78, 680, 860
BmrFI	CCNGG	4 cut(s)	74, 80, 747, 748
BmsI	GCATC	2 cut(s)	821, 916
BpuMI	CCSGG	3 cut(s)	80, 747, 748
BsaJI	CCNNGG	3 cut(s)	493, 682, 746
BsaWI	WCCGGW	1 cut(s)	121
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 85
Bse118I	RCCGGY	2 cut(s)	121, 675
Bse1I	ACTGG	2 cut(s)	394, 400
Bse3DI	GCAATG	1 cut(s)	720
BseBI	CCWGG	1 cut(s)	74
BseDI	CCNNGG	3 cut(s)	493, 682, 746
BseGI	GGATG	4 cut(s)	10, 796, 836, 931
BseLI	CCNNNNNNNGG	2 cut(s)	79, 85
BseMI	GCAATG	1 cut(s)	720
BseMII	CTCAG	1 cut(s)	235
BseNI	ACTGG	2 cut(s)	394, 400
BseRI	GAGGAG	2 cut(s)	214, 614
BseXI	GCAGC	2 cut(s)	56, 697
Bsh1236I	CGCG	1 cut(s)	207
BshFI	GGCC	2 cut(s)	89, 605
BshTI	ACCGGT	1 cut(s)	121
BsiHKAI	GWGCWC	1 cut(s)	765
BsiHKCI	CYCGRG	1 cut(s)	746
BsiSI	CCGG	4 cut(s)	80, 122, 676, 747
BslFI	GGGAC	2 cut(s)	62, 242
BslI	CCNNNNNNNGG	2 cut(s)	79, 85
BsmAI	GTCTC	1 cut(s)	66
BsmFI	GGGAC	2 cut(s)	62, 242
BsnI	GGCC	2 cut(s)	89, 605
BsoBI	CYCGRG	1 cut(s)	746
Bsp1286I	GDGCHC	1 cut(s)	765
Bsp143I	GATC	3 cut(s)	42, 571, 858
Bsp68I	TCGCGA	1 cut(s)	207
BspACI	CCGC	6 cut(s)	399, 403, 479, 701, 810, 816
BspANI	GGCC	2 cut(s)	89, 605
BspCNI	CTCAG	1 cut(s)	234
BspFNI	CGCG	1 cut(s)	207
BspLI	GGNNCC	3 cut(s)	78, 680, 860
BspPI	GGATC	2 cut(s)	853, 866
BspQI	GCTCTTC	1 cut(s)	577
BsrDI	GCAATG	1 cut(s)	720
BsrFI	RCCGGY	2 cut(s)	121, 675
BsrI	ACTGG	2 cut(s)	394, 400
BssAI	RCCGGY	2 cut(s)	121, 675
BssECI	CCNNGG	3 cut(s)	493, 682, 746
BssMI	GATC	3 cut(s)	42, 571, 858
BssT1I	CCWWGG	2 cut(s)	493, 682
Bst2UI	CCWGG	1 cut(s)	74
Bst4CI	ACNGT	4 cut(s)	314, 341, 367, 547
Bst6I	CTCTTC	2 cut(s)	577, 930
BstC8I	GCNNGC	5 cut(s)	36, 401, 677, 708, 825
BstDEI	CTNAG	2 cut(s)	221, 607
BstF5I	GGATG	4 cut(s)	10, 796, 836, 931
BstFNI	CGCG	1 cut(s)	207
BstKTI	GATC	3 cut(s)	45, 574, 861
BstMAI	GTCTC	1 cut(s)	66
BstMBI	GATC	3 cut(s)	42, 571, 858
BstMWI	GCNNNNNNNGC	2 cut(s)	634, 707
BstNI	CCWGG	1 cut(s)	74
BstNSI	RCATGY	3 cut(s)	38, 286, 628
BstSCI	CCNGG	4 cut(s)	72, 78, 745, 746
BstSFI	CTRYAG	1 cut(s)	469
BstUI	CGCG	1 cut(s)	207
BstV1I	GCAGC	2 cut(s)	56, 697
BstX2I	RGATCY	2 cut(s)	571, 858
BstYI	RGATCY	2 cut(s)	571, 858
BsuRI	GGCC	2 cut(s)	89, 605
BtsCI	GGATG	4 cut(s)	10, 796, 836, 931
BtsIMutI	CAGTG	3 cut(s)	337, 387, 393
BtuMI	TCGCGA	1 cut(s)	207
Cac8I	GCNNGC	5 cut(s)	36, 401, 677, 708, 825
Cfr10I	RCCGGY	2 cut(s)	121, 675
Cfr13I	GGNCC	2 cut(s)	76, 87
Cfr9I	CCCGGG	1 cut(s)	746
CseI	GACGC	1 cut(s)	415
CspAI	ACCGGT	1 cut(s)	121
CviAII	CATG	8 cut(s)	35, 277, 283, 412, 476, 625, 672, 974
DdeI	CTNAG	2 cut(s)	221, 607
DpnI	GATC	3 cut(s)	44, 573, 860
DpnII	GATC	3 cut(s)	42, 571, 858
Eam1104I	CTCTTC	2 cut(s)	577, 930
EarI	CTCTTC	2 cut(s)	577, 930
EciI	GGCGGA	1 cut(s)	418
Eco130I	CCWWGG	2 cut(s)	493, 682
Eco147I	AGGCCT	1 cut(s)	605
Eco47I	GGWCC	1 cut(s)	76
Eco88I	CYCGRG	1 cut(s)	746
EcoO109I	RGGNCCY	1 cut(s)	76
EcoRII	CCWGG	1 cut(s)	72
EcoT14I	CCWWGG	2 cut(s)	493, 682
ErhI	CCWWGG	2 cut(s)	493, 682
FaeI	CATG	8 cut(s)	38, 280, 286, 415, 479, 628, 675, 977
FalI	AAGNNNNNCTT	2 cut(s)	681, 713
FaqI	GGGAC	2 cut(s)	62, 242
FatI	CATG	8 cut(s)	34, 276, 282, 411, 475, 624, 671, 973
FauI	CCCGC	4 cut(s)	392, 472, 803, 809
FauNDI	CATATG	1 cut(s)	650
FbaI	TGATCA	1 cut(s)	42
FblI	GTMKAC	1 cut(s)	226
Fnu4HI	GCNGC	2 cut(s)	70, 711
FokI	GGATG	4 cut(s)	17, 803, 843, 938
Fsp4HI	GCNGC	2 cut(s)	70, 711
GluI	GCNGC	2 cut(s)	70, 711
HaeIII	GGCC	2 cut(s)	89, 605
HapII	CCGG	4 cut(s)	80, 122, 676, 747
HgaI	GACGC	1 cut(s)	415
Hin1II	CATG	8 cut(s)	38, 280, 286, 415, 479, 628, 675, 977
HindIII	AAGCTT	1 cut(s)	154
HinfI	GANTC	7 cut(s)	191, 202, 209, 219, 419, 426, 853
HpaII	CCGG	4 cut(s)	80, 122, 676, 747
Hpy166II	GTNNAC	1 cut(s)	227
Hpy188I	TCNGA	2 cut(s)	431, 858
Hpy188III	TCNNGA	6 cut(s)	188, 206, 251, 423, 642, 953
Hpy8I	GTNNAC	1 cut(s)	227
HpyCH4III	ACNGT	4 cut(s)	314, 341, 367, 547
HpyCH4IV	ACGT	1 cut(s)	866
HpyCH4V	TGCA	7 cut(s)	34, 290, 337, 713, 779, 834, 844
HpyF10VI	GCNNNNNNNGC	2 cut(s)	634, 707
HpyF3I	CTNAG	2 cut(s)	221, 607
HpySE526I	ACGT	1 cut(s)	866
Hsp92II	CATG	8 cut(s)	38, 280, 286, 415, 479, 628, 675, 977
KroI	GCCGGC	1 cut(s)	675
KroNI	GCCGGC	1 cut(s)	677
Ksp22I	TGATCA	1 cut(s)	42
Kzo9I	GATC	3 cut(s)	42, 571, 858
LguI	GCTCTTC	1 cut(s)	577
LmnI	GCTCC	3 cut(s)	299, 684, 703
Lsp1109I	GCAGC	2 cut(s)	56, 697
LweI	GCATC	2 cut(s)	821, 916
MaeII	ACGT	1 cut(s)	866
MaeIII	GTNAC	3 cut(s)	14, 385, 442
MalI	GATC	3 cut(s)	44, 573, 860
MboI	GATC	3 cut(s)	42, 571, 858
MboII	GAAGA	2 cut(s)	594, 947
MfeI	CAATTG	1 cut(s)	303
MflI	RGATCY	2 cut(s)	571, 858
MhlI	GDGCHC	1 cut(s)	765
MluCI	AATT	5 cut(s)	94, 142, 303, 594, 917
MlyI	GAGTC	5 cut(s)	211, 213, 218, 428, 862
MmeI	TCCRAC	1 cut(s)	836
MnlI	CCTC	7 cut(s)	102, 192, 312, 592, 595, 780, 931
MroNI	GCCGGC	1 cut(s)	675
MseI	TTAA	2 cut(s)	900, 979
MslI	CAYNNNNRTG	2 cut(s)	281, 629
MspI	CCGG	4 cut(s)	80, 122, 676, 747
MspR9I	CCNGG	4 cut(s)	74, 80, 747, 748
MunI	CAATTG	1 cut(s)	303
MvaI	CCWGG	1 cut(s)	74
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	2 cut(s)	634, 707
NaeI	GCCGGC	1 cut(s)	677
NciI	CCSGG	3 cut(s)	80, 747, 748
NdeI	CATATG	1 cut(s)	650
NdeII	GATC	3 cut(s)	42, 571, 858
NgoMIV	GCCGGC	1 cut(s)	675
NlaIII	CATG	8 cut(s)	38, 280, 286, 415, 479, 628, 675, 977
NlaIV	GGNNCC	3 cut(s)	78, 680, 860
NmuCI	GTSAC	2 cut(s)	385, 442
NruI	TCGCGA	1 cut(s)	207
NspI	RCATGY	3 cut(s)	38, 286, 628
PaeI	GCATGC	1 cut(s)	38
PceI	AGGCCT	1 cut(s)	605
PciI	ACATGT	1 cut(s)	282
PciSI	GCTCTTC	1 cut(s)	577
PdiI	GCCGGC	1 cut(s)	677
PfeI	GAWTC	2 cut(s)	191, 426
PinAI	ACCGGT	1 cut(s)	121
PkrI	GCNGC	2 cut(s)	71, 712
PleI	GAGTC	5 cut(s)	210, 213, 217, 427, 861
PpsI	GAGTC	5 cut(s)	210, 213, 217, 427, 861
PpuMI	RGGWCCY	1 cut(s)	76
PscI	ACATGT	1 cut(s)	282
Psp5II	RGGWCCY	1 cut(s)	76
Psp6I	CCWGG	1 cut(s)	72
PspGI	CCWGG	1 cut(s)	72
PspN4I	GGNNCC	3 cut(s)	78, 680, 860
PspPI	GGNCC	2 cut(s)	76, 87
PspPPI	RGGWCCY	1 cut(s)	76
PsuI	RGATCY	2 cut(s)	571, 858
RruI	TCGCGA	1 cut(s)	207
RseI	CAYNNNNRTG	2 cut(s)	281, 629
SapI	GCTCTTC	1 cut(s)	577
SaqAI	TTAA	2 cut(s)	900, 979
SatI	GCNGC	2 cut(s)	70, 711
Sau3AI	GATC	3 cut(s)	42, 571, 858
Sau96I	GGNCC	2 cut(s)	76, 87
SchI	GAGTC	5 cut(s)	211, 213, 218, 428, 862
ScrFI	CCNGG	4 cut(s)	74, 80, 747, 748
SduI	GDGCHC	1 cut(s)	765
SetI	ASST	9 cut(s)	78, 158, 449, 457, 589, 732, 739, 869, 942
SfaNI	GCATC	2 cut(s)	821, 916
SfcI	CTRYAG	1 cut(s)	469
SinI	GGWCC	1 cut(s)	76
SmaI	CCCGGG	1 cut(s)	748
SmiMI	CAYNNNNRTG	2 cut(s)	281, 629
SphI	GCATGC	1 cut(s)	38
Sse9I	AATT	5 cut(s)	94, 142, 303, 594, 917
SseBI	AGGCCT	1 cut(s)	605
SsiI	CCGC	6 cut(s)	399, 403, 479, 701, 810, 816
StuI	AGGCCT	1 cut(s)	605
StyD4I	CCNGG	4 cut(s)	72, 78, 745, 746
StyI	CCWWGG	2 cut(s)	493, 682
TaaI	ACNGT	4 cut(s)	314, 341, 367, 547
TaiI	ACGT	1 cut(s)	869
TaqI	TCGA	1 cut(s)	101
TaqII	GACCGA	1 cut(s)	244
TasI	AATT	5 cut(s)	94, 142, 303, 594, 917
TfiI	GAWTC	2 cut(s)	191, 426
Tru1I	TTAA	2 cut(s)	900, 979
Tru9I	TTAA	2 cut(s)	900, 979
TscAI	CASTG	3 cut(s)	344, 394, 400
TseFI	GTSAC	2 cut(s)	385, 442
TseI	GCWGC	2 cut(s)	69, 710
Tsp45I	GTSAC	2 cut(s)	385, 442
TspDTI	ATGAA	3 cut(s)	533, 648, 930
TspGWI	ACGGA	2 cut(s)	514, 938
TspMI	CCCGGG	1 cut(s)	746
TspRI	CASTG	3 cut(s)	344, 394, 400
VpaK11BI	GGWCC	1 cut(s)	76
XapI	RAATTY	1 cut(s)	94
XceI	RCATGY	3 cut(s)	38, 286, 628
XmaI	CCCGGG	1 cut(s)	746
XmiI	GTMKAC	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.