Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0011933

Physical Location & Seq

Genomic Coordinates Reverse (-)

38054016 .. 38054603

Gene Structure 588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG340300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGATTGGCGCCATTTCTGTGTCAACTAGCACAACTGTGACTTGTTCAGTCTCCGGCATTTCTCAAAAACCCAGCAAGCCTCTAACTCCCTCAACTCTCAAATGGCTTGCAAAATCCGGCAAACTAGAAGAGGCCATTCGCCTGATCGAAGCCTCACCCTCCAAATTGACGGCCACCGAGTCCGACATCGAGGCCTACTCCCTCCTCCTCCACACCTGTATCTCCCAAAAATCCTTAGAGCATGGCCAAAGGCTTTACCTACAGTTTCTTGTCTCAGAAGACAAAGTGAACCACAGCCTCGTCAACAATCCCACCTTGAAAACCAAGCTCATTACTCTCTACTCTGTCTGCGGCCGAGTTGACGACGCCCACTCTGTTTTCGTCGACGGTGAACACGCGCCTGAGGAGTCAGTGTGGGTGGCCATGGCCATTGCGTATTTGAGAAATGGCTACTTGGAGAAAGCGTTGCTCTTATATTGTGAAATGTTGTGCCGGCTAGTCTGGCCGGGGAATTTCGCATTCTCGATGGCGTTGAAGGCCTCTGCAGAGTTGTCTGAGCTTAGAGTCGGGAGAGTAGTCCATGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016553 GO:0016554 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

195

Amino Acids

21.38

Weight (kDa)

7.0

Isoelectric Point (pI)

25.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14330
fragaria_vesca	FvH4_1g28620
malus_domestica	MD17G1262400.v1.1
prunus_persica	Prupe.3G163800_v2.0.a1
pyrus_communis	pycom17g26230
rosa_chinensis	RchiOBHm_Chr3g0492571
rosa_laevigata	RLG00000022759
rosa_multiflora	Rmu_sc0000831.1_g000061 Rmu_sc0008694.1_g000001
rosa_roxburghii	Rroxscaffold_4G00325000 Rroxscaffold_4G00325010
rosa_rugosa	Rorug03G0254500
rosa_samantha	Rh3BG340900 Rh3BG341000 Rh3BG341100 Rh3CG338400 Rh3DG340200 Rh3DG340300 Rh5BG302200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	8
AccI	GTMKAC	1 cut(s)	384
AccII	CGCG	1 cut(s)	398
AciI	CCGC	1 cut(s)	351
AcoI	YGGCCR	6 cut(s)	171, 244, 352, 420, 426, 503
AcsI	RAATTY	1 cut(s)	511
AcyI	GRCGYC	2 cut(s)	9, 366
AgsI	TTSAA	2 cut(s)	319, 535
AleI	CACNNNNGTG	1 cut(s)	35
AluBI	AGCT	2 cut(s)	328, 559
AluI	AGCT	2 cut(s)	328, 559
Alw26I	GTCTC	2 cut(s)	55, 277
AoxI	GGCC	9 cut(s)	132, 171, 192, 244, 352, 420, 426, 503, 537
ApoI	RAATTY	1 cut(s)	511
AspLEI	GCGC	2 cut(s)	11, 400
AsuC2I	CCSGG	1 cut(s)	507
AsuHPI	GGTGA	2 cut(s)	147, 401
AxyI	CCTNAGG	1 cut(s)	402
BaeI	ACNNNNGTAYC	2 cut(s)	202, 235
BalI	TGGCCA	3 cut(s)	246, 422, 428
BanI	GGYRCC	1 cut(s)	8
BbsI	GAAGAC	1 cut(s)	285
BccI	CCATC	1 cut(s)	520
BceAI	ACGGC	1 cut(s)	186
BcnI	CCSGG	1 cut(s)	507
BcoDI	GTCTC	2 cut(s)	55, 277
BfaI	CTAG	4 cut(s)	27, 125, 497, 586
BfmI	CTRYAG	2 cut(s)	260, 543
BfoI	RGCGCY	1 cut(s)	12
BisI	GCNGC	1 cut(s)	352
BlsI	GCNGC	1 cut(s)	353
Bme1390I	CCNGG	1 cut(s)	507
BmiI	GGNNCC	1 cut(s)	10
BmrFI	CCNGG	1 cut(s)	507
BpiI	GAAGAC	1 cut(s)	285
BplI	GAGNNNNNCTC	2 cut(s)	182, 214
BpuMI	CCSGG	1 cut(s)	507
BsaHI	GRCGYC	2 cut(s)	9, 366
BsaJI	CCNNGG	2 cut(s)	423, 506
BsaXI	ACNNNNNCTCC	4 cut(s)	398, 428, 449, 479
Bse118I	RCCGGY	1 cut(s)	492
Bse21I	CCTNAGG	1 cut(s)	402
Bse3DI	GCAATG	1 cut(s)	429
BseDI	CCNNGG	2 cut(s)	423, 506
BseMI	GCAATG	1 cut(s)	429
BseMII	CTCAG	3 cut(s)	288, 393, 546
BseRI	GAGGAG	3 cut(s)	194, 197, 419
BseX3I	CGGCCG	1 cut(s)	352
BseYI	CCCAGC	1 cut(s)	71
Bsh1236I	CGCG	1 cut(s)	398
Bsh1285I	CGRYCG	1 cut(s)	355
BshFI	GGCC	9 cut(s)	134, 173, 194, 246, 354, 422, 428, 505, 539
BshNI	GGYRCC	1 cut(s)	8
BsiEI	CGRYCG	1 cut(s)	355
BsiSI	CCGG	4 cut(s)	54, 117, 493, 506
BsmAI	GTCTC	2 cut(s)	55, 277
BsmI	GAATGC	1 cut(s)	518
BsnI	GGCC	9 cut(s)	134, 173, 194, 246, 354, 422, 428, 505, 539
Bsp143I	GATC	1 cut(s)	144
Bsp19I	CCATGG	1 cut(s)	423
BspACI	CCGC	1 cut(s)	351
BspANI	GGCC	9 cut(s)	134, 173, 194, 246, 354, 422, 428, 505, 539
BspCNI	CTCAG	3 cut(s)	287, 394, 547
BspFNI	CGCG	1 cut(s)	398
BspLI	GGNNCC	1 cut(s)	10
BspMAI	CTGCAG	1 cut(s)	547
BspT107I	GGYRCC	1 cut(s)	8
BsrDI	GCAATG	1 cut(s)	429
BsrFI	RCCGGY	1 cut(s)	492
BssAI	RCCGGY	1 cut(s)	492
BssECI	CCNNGG	2 cut(s)	423, 506
BssMI	GATC	1 cut(s)	144
BssNI	GRCGYC	2 cut(s)	9, 366
BssT1I	CCWWGG	1 cut(s)	423
Bst4CI	ACNGT	3 cut(s)	37, 264, 389
Bst6I	CTCTTC	1 cut(s)	123
BstACI	GRCGYC	2 cut(s)	9, 366
BstC8I	GCNNGC	3 cut(s)	77, 108, 494
BstDEI	CTNAG	5 cut(s)	235, 274, 402, 555, 560
BstDSI	CCRYGG	1 cut(s)	423
BstFNI	CGCG	1 cut(s)	398
BstH2I	RGCGCY	1 cut(s)	12
BstHHI	GCGC	2 cut(s)	11, 400
BstKTI	GATC	1 cut(s)	147
BstMAI	GTCTC	2 cut(s)	55, 277
BstMBI	GATC	1 cut(s)	144
BstMCI	CGRYCG	1 cut(s)	355
BstMWI	GCNNNNNNNGC	2 cut(s)	502, 536
BstSCI	CCNGG	1 cut(s)	505
BstSFI	CTRYAG	2 cut(s)	260, 543
BstUI	CGCG	1 cut(s)	398
BstV2I	GAAGAC	1 cut(s)	285
BstZI	CGGCCG	1 cut(s)	352
Bsu36I	CCTNAGG	1 cut(s)	402
BsuRI	GGCC	9 cut(s)	134, 173, 194, 246, 354, 422, 428, 505, 539
BtgI	CCRYGG	1 cut(s)	423
BtsIMutI	CAGTG	1 cut(s)	417
Cac8I	GCNNGC	3 cut(s)	77, 108, 494
CfoI	GCGC	2 cut(s)	11, 400
Cfr10I	RCCGGY	1 cut(s)	492
CseI	GACGC	1 cut(s)	374
CviAII	CATG	3 cut(s)	242, 424, 581
DdeI	CTNAG	5 cut(s)	235, 274, 402, 555, 560
DinI	GGCGCC	1 cut(s)	10
DpnI	GATC	1 cut(s)	146
DpnII	GATC	1 cut(s)	144
EaeI	YGGCCR	6 cut(s)	171, 244, 352, 420, 426, 503
EagI	CGGCCG	1 cut(s)	352
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
EclXI	CGGCCG	1 cut(s)	352
Eco130I	CCWWGG	1 cut(s)	423
Eco147I	AGGCCT	2 cut(s)	194, 539
Eco52I	CGGCCG	1 cut(s)	352
Eco81I	CCTNAGG	1 cut(s)	402
EcoT14I	CCWWGG	1 cut(s)	423
EgeI	GGCGCC	1 cut(s)	10
EheI	GGCGCC	1 cut(s)	10
ErhI	CCWWGG	1 cut(s)	423
FaeI	CATG	3 cut(s)	245, 427, 584
FaiI	YATR	4 cut(s)	243, 425, 475, 582
FatI	CATG	3 cut(s)	241, 423, 580
FblI	GTMKAC	1 cut(s)	384
Fnu4HI	GCNGC	1 cut(s)	352
Fsp4HI	GCNGC	1 cut(s)	352
FspBI	CTAG	4 cut(s)	27, 125, 497, 586
GlaI	GCGC	2 cut(s)	10, 399
GluI	GCNGC	1 cut(s)	352
GsaI	CCCAGC	1 cut(s)	75
HaeII	RGCGCY	1 cut(s)	12
HaeIII	GGCC	9 cut(s)	134, 173, 194, 246, 354, 422, 428, 505, 539
HapII	CCGG	4 cut(s)	54, 117, 493, 506
HgaI	GACGC	1 cut(s)	374
HhaI	GCGC	2 cut(s)	11, 400
Hin1I	GRCGYC	2 cut(s)	9, 366
Hin1II	CATG	3 cut(s)	245, 427, 584
Hin6I	GCGC	2 cut(s)	9, 398
HinP1I	GCGC	2 cut(s)	9, 398
HincII	GTYRAC	4 cut(s)	24, 304, 361, 385
HindII	GTYRAC	4 cut(s)	24, 304, 361, 385
HinfI	GANTC	3 cut(s)	179, 407, 564
HpaII	CCGG	4 cut(s)	54, 117, 493, 506
HphI	GGTGA	2 cut(s)	147, 401
Hpy166II	GTNNAC	6 cut(s)	24, 289, 304, 361, 385, 392
Hpy188I	TCNGA	3 cut(s)	184, 277, 556
Hpy188III	TCNNGA	2 cut(s)	523, 568
Hpy8I	GTNNAC	6 cut(s)	24, 289, 304, 361, 385, 392
Hpy99I	CGWCG	3 cut(s)	368, 386, 389
HpyAV	CCTTC	1 cut(s)	529
HpyCH4III	ACNGT	3 cut(s)	37, 264, 389
HpyCH4V	TGCA	2 cut(s)	110, 545
HpyF10VI	GCNNNNNNNGC	2 cut(s)	502, 536
HpyF3I	CTNAG	5 cut(s)	235, 274, 402, 555, 560
Hsp92I	GRCGYC	2 cut(s)	9, 366
Hsp92II	CATG	3 cut(s)	245, 427, 584
HspAI	GCGC	2 cut(s)	9, 398
KasI	GGCGCC	1 cut(s)	8
KroI	GCCGGC	1 cut(s)	492
KroNI	GCCGGC	1 cut(s)	494
Kzo9I	GATC	1 cut(s)	144
LpnPI	CCDG	9 cut(s)	67, 85, 130, 155, 229, 414, 487, 506, 519
MaeI	CTAG	4 cut(s)	27, 125, 497, 586
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	1 cut(s)	146
MboI	GATC	1 cut(s)	144
MboII	GAAGA	2 cut(s)	140, 290
MlsI	TGGCCA	3 cut(s)	246, 422, 428
MluCI	AATT	2 cut(s)	164, 511
MluNI	TGGCCA	3 cut(s)	246, 422, 428
Mly113I	GGCGCC	1 cut(s)	9
MlyI	GAGTC	3 cut(s)	188, 416, 573
MmeI	TCCRAC	1 cut(s)	207
Mox20I	TGGCCA	3 cut(s)	246, 422, 428
MroNI	GCCGGC	1 cut(s)	492
MscI	TGGCCA	3 cut(s)	246, 422, 428
MslI	CAYNNNNRTG	2 cut(s)	17, 35
Msp20I	TGGCCA	3 cut(s)	246, 422, 428
MspI	CCGG	4 cut(s)	54, 117, 493, 506
MspR9I	CCNGG	1 cut(s)	507
Mva1269I	GAATGC	1 cut(s)	518
MvnI	CGCG	1 cut(s)	398
MwoI	GCNNNNNNNGC	2 cut(s)	502, 536
NaeI	GCCGGC	1 cut(s)	494
NarI	GGCGCC	1 cut(s)	9
NciI	CCSGG	1 cut(s)	507
NcoI	CCATGG	1 cut(s)	423
NdeII	GATC	1 cut(s)	144
NgoMIV	GCCGGC	1 cut(s)	492
NlaIII	CATG	3 cut(s)	245, 427, 584
NlaIV	GGNNCC	1 cut(s)	10
NmeAIII	GCCGAG	1 cut(s)	380
NmuCI	GTSAC	1 cut(s)	37
OliI	CACNNNNGTG	1 cut(s)	35
PceI	AGGCCT	2 cut(s)	194, 539
PctI	GAATGC	1 cut(s)	518
PdiI	GCCGGC	1 cut(s)	494
PkrI	GCNGC	1 cut(s)	353
PleI	GAGTC	3 cut(s)	187, 415, 572
PluTI	GGCGCC	1 cut(s)	12
PpsI	GAGTC	3 cut(s)	187, 415, 572
PspFI	CCCAGC	1 cut(s)	71
PspN4I	GGNNCC	1 cut(s)	10
PstI	CTGCAG	1 cut(s)	547
RseI	CAYNNNNRTG	2 cut(s)	17, 35
SalI	GTCGAC	1 cut(s)	383
SatI	GCNGC	1 cut(s)	352
Sau3AI	GATC	1 cut(s)	144
SchI	GAGTC	3 cut(s)	188, 416, 573
ScrFI	CCNGG	1 cut(s)	507
SetI	ASST	5 cut(s)	218, 261, 317, 330, 561
SfcI	CTRYAG	2 cut(s)	260, 543
SfoI	GGCGCC	1 cut(s)	10
SgrDI	CGTCGACG	1 cut(s)	383
SmiMI	CAYNNNNRTG	2 cut(s)	17, 35
Sse9I	AATT	2 cut(s)	164, 511
SseBI	AGGCCT	2 cut(s)	194, 539
SsiI	CCGC	1 cut(s)	351
SspDI	GGCGCC	1 cut(s)	8
SspMI	CTAG	4 cut(s)	27, 125, 497, 586
StuI	AGGCCT	2 cut(s)	194, 539
StyD4I	CCNGG	1 cut(s)	505
StyI	CCWWGG	1 cut(s)	423
TaaI	ACNGT	3 cut(s)	37, 264, 389
TaqI	TCGA	4 cut(s)	147, 189, 384, 524
TasI	AATT	2 cut(s)	164, 511
TauI	GCSGC	1 cut(s)	354
TscAI	CASTG	1 cut(s)	417
TseFI	GTSAC	1 cut(s)	37
Tsp45I	GTSAC	1 cut(s)	37
TspRI	CASTG	1 cut(s)	417
XapI	RAATTY	1 cut(s)	511
XmiI	GTMKAC	1 cut(s)	384
XspI	CTAG	4 cut(s)	27, 125, 497, 586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.