Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010007

Physical Location & Seq

Genomic Coordinates Reverse (-)

4998304 .. 5001046

Gene Structure 2743 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G14860.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1479 bp

ATGGGCAAATCTCAGATTCTTCTAAACGCTGAGAGCTTTACTTGTTCTTCTTTCAATACTTTCTTCACTTTATGGATCTTCTTTACTCTTCACTCCTTTCCATTTCAAGCTCAAGCTGCTCCTTCTGGTTCCTTGATTAAGCACATGTCATCGGTTCTCAAGTGGACTACTGGATCATCCTCTAAATTATCCCAATCAGACACTAATGTTCTTCAGTTTGAGAATGGTTACTTGGTCGAAACTGTTGTGGAAGGAAACGATATTGGTGTTGTTCCTTACAAGATTCGAGTTTCTGATGATGGAGAACTTTATGCTGTTGATGAACTTAATAGCAACATCATGAAAATCACTCCTCCCTTGTCTCAGTACAGCAGGGGAAGATTGGTGGCTGGATCTTTTCAAGGAAAAACAGGGCATGCAGATGGAAAACCGAGTGAGGCTCGTTTTAACCATCCGAGAGGCGTTACAATGGATGACAAAGGGAACGTTTATGTCGCTGATACTTTGAATCTCGCCATCCGAAAGATTGGTGATTCAGGTGTTACTACGATAGCTGGGGGAAAATCAAATATAGCTGGGTATAGAGATGGGCCAAGTGAGGATGCAAAGTTCTCAAATGATTTTGATGTCGTATATGTTCGGCCTACCTGCTCGTTGCTGGTCATCGATAGAGGAAATGCGGCTCTTCGCCAAATCTCTCTCAGTGAAGAGGACTGTGACTATCAAGATGATAGCTCAATCTCTCTAACTGATATACTCTTGGTTATTGGTGCTGTTCTCATTGGTTATGCTACTTGTATGCTCCAGCAGGGCTTTGGAAATTCTTTCTTCTCAAAGACGGTAGGATCAGAAACCAGCTATGAAGAAGAGCATCCAGGAAAAGAGAAACTCTCCCGGCCTGTCCATGAGAAAACAATAACCAAGGAAGAACCTGGTTGGCCATCATTTGGGCAACTCCTTACTGATCTCTGCAAACTTGCTCTCGAGTTTATAACCAGCCACCTAGTTCCAGCCCGATTCCAAACCAACCCCAATCTAAGGCCATTAAAAGATAGACTCATAATGCCTGAAGACGAACAAGAACCACCTCGAGTCCAAAGGCATACTGCCCCAGCACCAATCTCAGAATCCCGACATGCTCACTTACCTAAAGCTGATGATAGTTACCCTGAACATAAGACGCCAAAGCTAAGATCAAGTAGTGTAATGAAGGACCCTACTTTGTCATCATCCAAGCACCATCGGACATCATCAAAACGGCAGGACTATGCTCAGTTCTATGCCTCGGGAGAGGTTGCCCAACCGAAGATCCATAAAGAGCGGTCAAGGCGTCGTCATAGAGATAAAACAACCGAGACAGAACCAAAGCCAACACCATCAGATACGGTGAAGCCTGTGGAGTACAGTAATAGTTCAAAGTTTGATCATTACAACATGAGGAGCAGCAAGTATGGACCTGAAACTCCATTTCGATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NHL

Protein Analysis

492

Amino Acids

54.83

Weight (kDa)

6.98

Isoelectric Point (pI)

49.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14860 AT3G14860
fragaria_vesca	FvH4_3g18140 FvH4_3g18140
malus_domestica	MD11G1265700.v1.1
prunus_persica	Prupe.4G160200_v2.0.a1 Prupe.4G160200_v2.0.a1 Prupe.4G160200_v2.0.a1 Prupe.4G160200_v2.0.a1 Prupe.4G160200_v2.0.a1
pyrus_communis	pycom03g19380 pycom11g23360
rosa_chinensis	RchiOBHm_Chr5g0030571
rosa_laevigata	RLG00000033228
rosa_roxburghii	Rroxscaffold_1G00049730
rosa_rugosa	Rorug05G0118400
rosa_samantha	Rh5AG210700 Rh5BG209800 Rh5CG233500 Rh5DG214300
rosa_wichuraiana	Rw5G019280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	992
Acc36I	ACCTGC	1 cut(s)	656
AccB7I	CCANNNNNTGG	1 cut(s)	947
AccBSI	CCGCTC	1 cut(s)	1321
AciI	CCGC	2 cut(s)	680, 1321
AclI	AACGTT	1 cut(s)	486
AclWI	GGATC	5 cut(s)	83, 181, 400, 853, 1303
AcoI	YGGCCR	1 cut(s)	938
AcsI	RAATTY	1 cut(s)	820
AcuI	CTGAAG	2 cut(s)	197, 1089
AcyI	GRCGYC	2 cut(s)	1181, 1330
AfaI	GTAC	2 cut(s)	368, 1403
AfiI	CCNNNNNNNGG	2 cut(s)	947, 1038
AflIII	ACRYGT	1 cut(s)	144
AgsI	TTSAA	5 cut(s)	55, 107, 401, 508, 1416
AjnI	CCWGG	2 cut(s)	874, 931
AjuI	GAANNNNNNNTTGG	2 cut(s)	215, 247
AloI	GAACNNNNNNTCC	2 cut(s)	593, 625
AluBI	AGCT	9 cut(s)	36, 110, 116, 554, 575, 735, 858, 1154, 1189
AluI	AGCT	9 cut(s)	36, 110, 116, 554, 575, 735, 858, 1154, 1189
Alw26I	GTCTC	2 cut(s)	366, 1349
AlwI	GGATC	5 cut(s)	83, 181, 400, 853, 1303
Ama87I	CYCGRG	3 cut(s)	983, 1089, 1285
AoxI	GGCC	5 cut(s)	590, 641, 896, 938, 1040
ApeKI	GCWGC	2 cut(s)	116, 1443
ApoI	RAATTY	1 cut(s)	820
AspS9I	GGNCC	3 cut(s)	590, 1213, 1454
AsuC2I	CCSGG	1 cut(s)	895
AsuHPI	GGTGA	2 cut(s)	542, 1399
AvaI	CYCGRG	3 cut(s)	983, 1089, 1285
AvaII	GGWCC	2 cut(s)	1213, 1454
BalI	TGGCCA	1 cut(s)	940
BbsI	GAAGAC	1 cut(s)	1077
BbvI	GCAGC	2 cut(s)	103, 1455
BccI	CCATC	8 cut(s)	293, 416, 459, 524, 581, 949, 1248, 1384
BceAI	ACGGC	1 cut(s)	1274
BciT130I	CCWGG	2 cut(s)	876, 933
BclI	TGATCA	1 cut(s)	1423
BcnI	CCSGG	1 cut(s)	895
BcoDI	GTCTC	2 cut(s)	366, 1349
BfaI	CTAG	2 cut(s)	1004, 1477
BfuAI	ACCTGC	1 cut(s)	656
BisI	GCNGC	3 cut(s)	117, 681, 1444
BlsI	GCNGC	3 cut(s)	118, 682, 1445
Bme1390I	CCNGG	3 cut(s)	876, 895, 933
Bme18I	GGWCC	2 cut(s)	1213, 1454
BmeT110I	CYCGRG	3 cut(s)	983, 1089, 1285
BmgT120I	GGNCC	3 cut(s)	590, 1213, 1454
BmiI	GGNNCC	2 cut(s)	130, 1215
BmrFI	CCNGG	3 cut(s)	876, 895, 933
BmsI	GCATC	2 cut(s)	592, 880
BpiI	GAAGAC	1 cut(s)	1077
BplI	GAGNNNNNCTC	4 cut(s)	424, 456, 875, 907
BpmI	CTGGAG	1 cut(s)	788
BpuEI	CTTGAG	2 cut(s)	96, 143
BpuMI	CCSGG	1 cut(s)	895
Bsa29I	ATCGAT	1 cut(s)	666
BsaHI	GRCGYC	2 cut(s)	1181, 1330
BsaJI	CCNNGG	2 cut(s)	921, 1284
Bsc4I	CCNNNNNNNGG	2 cut(s)	947, 1038
Bse1I	ACTGG	1 cut(s)	175
BseBI	CCWGG	2 cut(s)	876, 933
BseCI	ATCGAT	1 cut(s)	666
BseDI	CCNNGG	2 cut(s)	921, 1284
BseGI	GGATG	7 cut(s)	176, 451, 478, 516, 607, 871, 1229
BseLI	CCNNNNNNNGG	2 cut(s)	947, 1038
BseMII	CTCAG	6 cut(s)	21, 26, 377, 715, 1137, 1286
BseNI	ACTGG	1 cut(s)	175
BseRI	GAGGAG	2 cut(s)	342, 1453
BseXI	GCAGC	2 cut(s)	103, 1455
BseYI	CCCAGC	3 cut(s)	554, 575, 1111
BshFI	GGCC	5 cut(s)	592, 643, 898, 940, 1042
BshVI	ATCGAT	1 cut(s)	666
BsiHKCI	CYCGRG	3 cut(s)	983, 1089, 1285
BsiSI	CCGG	1 cut(s)	895
BslI	CCNNNNNNNGG	2 cut(s)	947, 1038
BsmAI	GTCTC	2 cut(s)	366, 1349
BsnI	GGCC	5 cut(s)	592, 643, 898, 940, 1042
BsoBI	CYCGRG	3 cut(s)	983, 1089, 1285
Bsp143I	GATC	8 cut(s)	75, 173, 392, 845, 964, 1193, 1308, 1423
BspACI	CCGC	2 cut(s)	680, 1321
BspANI	GGCC	5 cut(s)	592, 643, 898, 940, 1042
BspCNI	CTCAG	6 cut(s)	22, 25, 376, 714, 1136, 1285
BspDI	ATCGAT	1 cut(s)	666
BspHI	TCATGA	1 cut(s)	339
BspLI	GGNNCC	2 cut(s)	130, 1215
BspMI	ACCTGC	1 cut(s)	656
BspPI	GGATC	5 cut(s)	83, 181, 400, 853, 1303
BspQI	GCTCTTC	2 cut(s)	690, 861
BsrBI	CCGCTC	1 cut(s)	1321
BsrI	ACTGG	1 cut(s)	175
BssECI	CCNNGG	2 cut(s)	921, 1284
BssMI	GATC	8 cut(s)	75, 173, 392, 845, 964, 1193, 1308, 1423
BssNI	GRCGYC	2 cut(s)	1181, 1330
BssT1I	CCWWGG	1 cut(s)	921
Bst2UI	CCWGG	2 cut(s)	876, 933
Bst4CI	ACNGT	5 cut(s)	244, 716, 841, 1387, 1406
Bst6I	CTCTTC	4 cut(s)	93, 690, 702, 861
BstACI	GRCGYC	2 cut(s)	1181, 1330
BstC8I	GCNNGC	1 cut(s)	417
BstDEI	CTNAG	8 cut(s)	12, 30, 363, 701, 1037, 1123, 1190, 1272
BstF5I	GGATG	7 cut(s)	176, 451, 478, 516, 607, 871, 1229
BstKTI	GATC	8 cut(s)	78, 176, 395, 848, 967, 1196, 1311, 1426
BstMAI	GTCTC	2 cut(s)	366, 1349
BstMBI	GATC	8 cut(s)	75, 173, 392, 845, 964, 1193, 1308, 1423
BstMWI	GCNNNNNNNGC	2 cut(s)	116, 1327
BstNI	CCWGG	2 cut(s)	876, 933
BstNSI	RCATGY	3 cut(s)	148, 419, 1139
BstSCI	CCNGG	3 cut(s)	874, 893, 931
BstV1I	GCAGC	2 cut(s)	103, 1455
BstV2I	GAAGAC	1 cut(s)	1077
BstX2I	RGATCY	3 cut(s)	75, 392, 1308
BstYI	RGATCY	3 cut(s)	75, 392, 1308
Bsu15I	ATCGAT	1 cut(s)	666
BsuRI	GGCC	5 cut(s)	592, 643, 898, 940, 1042
BsuTUI	ATCGAT	1 cut(s)	666
BtsCI	GGATG	7 cut(s)	176, 451, 478, 516, 607, 871, 1229
BtsIMutI	CAGTG	1 cut(s)	709
BveI	ACCTGC	1 cut(s)	656
Cac8I	GCNNGC	1 cut(s)	417
CciI	TCATGA	1 cut(s)	339
Cfr13I	GGNCC	3 cut(s)	590, 1213, 1454
ClaI	ATCGAT	1 cut(s)	666
CseI	GACGC	2 cut(s)	1189, 1319
CsiI	ACCWGGT	1 cut(s)	931
Csp6I	GTAC	2 cut(s)	367, 1402
CviAII	CATG	6 cut(s)	145, 340, 416, 905, 1136, 1435
CviQI	GTAC	2 cut(s)	367, 1402
DdeI	CTNAG	8 cut(s)	12, 30, 363, 701, 1037, 1123, 1190, 1272
DpnI	GATC	8 cut(s)	77, 175, 394, 847, 966, 1195, 1310, 1425
DpnII	GATC	8 cut(s)	75, 173, 392, 845, 964, 1193, 1308, 1423
EaeI	YGGCCR	1 cut(s)	938
Eam1104I	CTCTTC	4 cut(s)	93, 690, 702, 861
EarI	CTCTTC	4 cut(s)	93, 690, 702, 861
Eco130I	CCWWGG	1 cut(s)	921
Eco47I	GGWCC	2 cut(s)	1213, 1454
Eco57I	CTGAAG	2 cut(s)	197, 1089
Eco88I	CYCGRG	3 cut(s)	983, 1089, 1285
EcoO109I	RGGNCCY	1 cut(s)	1213
EcoRII	CCWGG	2 cut(s)	874, 931
EcoT14I	CCWWGG	1 cut(s)	921
ErhI	CCWWGG	1 cut(s)	921
FaeI	CATG	6 cut(s)	148, 343, 419, 908, 1139, 1438
FatI	CATG	6 cut(s)	144, 339, 415, 904, 1135, 1434
FbaI	TGATCA	1 cut(s)	1423
Fnu4HI	GCNGC	3 cut(s)	117, 681, 1444
FokI	GGATG	7 cut(s)	163, 438, 485, 503, 614, 858, 1216
Fsp4HI	GCNGC	3 cut(s)	117, 681, 1444
FspBI	CTAG	2 cut(s)	1004, 1477
GluI	GCNGC	3 cut(s)	117, 681, 1444
GsaI	CCCAGC	3 cut(s)	558, 579, 1115
GsuI	CTGGAG	1 cut(s)	788
HaeIII	GGCC	5 cut(s)	592, 643, 898, 940, 1042
HapII	CCGG	1 cut(s)	895
HgaI	GACGC	2 cut(s)	1189, 1319
Hin1I	GRCGYC	2 cut(s)	1181, 1330
Hin1II	CATG	6 cut(s)	148, 343, 419, 908, 1139, 1438
HinfI	GANTC	9 cut(s)	16, 283, 508, 533, 1017, 1056, 1092, 1127, 1473
HpaII	CCGG	1 cut(s)	895
HphI	GGTGA	2 cut(s)	542, 1399
Hpy166II	GTNNAC	1 cut(s)	165
Hpy188I	TCNGA	9 cut(s)	15, 199, 295, 456, 521, 850, 1126, 1245, 1381
Hpy188III	TCNNGA	5 cut(s)	340, 725, 983, 1131, 1287
Hpy8I	GTNNAC	1 cut(s)	165
Hpy99I	CGWCG	1 cut(s)	1335
HpyAV	CCTTC	3 cut(s)	132, 245, 1204
HpyCH4III	ACNGT	5 cut(s)	244, 716, 841, 1387, 1406
HpyCH4IV	ACGT	1 cut(s)	486
HpyCH4V	TGCA	3 cut(s)	419, 605, 972
HpyF10VI	GCNNNNNNNGC	2 cut(s)	116, 1327
HpyF3I	CTNAG	8 cut(s)	12, 30, 363, 701, 1037, 1123, 1190, 1272
HpySE526I	ACGT	1 cut(s)	486
Hsp92I	GRCGYC	2 cut(s)	1181, 1330
Hsp92II	CATG	6 cut(s)	148, 343, 419, 908, 1139, 1438
Ksp22I	TGATCA	1 cut(s)	1423
Kzo9I	GATC	8 cut(s)	75, 173, 392, 845, 964, 1193, 1308, 1423
LguI	GCTCTTC	2 cut(s)	690, 861
LmnI	GCTCC	3 cut(s)	124, 807, 1440
Lsp1109I	GCAGC	2 cut(s)	103, 1455
LweI	GCATC	2 cut(s)	592, 880
MabI	ACCWGGT	1 cut(s)	931
MaeI	CTAG	2 cut(s)	1004, 1477
MaeII	ACGT	1 cut(s)	486
MaeIII	GTNAC	5 cut(s)	227, 463, 541, 716, 1163
MalI	GATC	8 cut(s)	77, 175, 394, 847, 966, 1195, 1310, 1425
MbiI	CCGCTC	1 cut(s)	1321
MboI	GATC	8 cut(s)	75, 173, 392, 845, 964, 1193, 1308, 1423
MflI	RGATCY	3 cut(s)	75, 392, 1308
MlsI	TGGCCA	1 cut(s)	940
MluCI	AATT	2 cut(s)	185, 820
MluNI	TGGCCA	1 cut(s)	940
MlyI	GAGTC	2 cut(s)	1050, 1101
Mox20I	TGGCCA	1 cut(s)	940
MscI	TGGCCA	1 cut(s)	940
MseI	TTAA	4 cut(s)	138, 327, 447, 1046
MslI	CAYNNNNRTG	1 cut(s)	420
Msp20I	TGGCCA	1 cut(s)	940
MspI	CCGG	1 cut(s)	895
MspR9I	CCNGG	3 cut(s)	876, 895, 933
MvaI	CCWGG	2 cut(s)	876, 933
MwoI	GCNNNNNNNGC	2 cut(s)	116, 1327
NciI	CCSGG	1 cut(s)	895
NdeII	GATC	8 cut(s)	75, 173, 392, 845, 964, 1193, 1308, 1423
NlaIII	CATG	6 cut(s)	148, 343, 419, 908, 1139, 1438
NlaIV	GGNNCC	2 cut(s)	130, 1215
NmuCI	GTSAC	1 cut(s)	716
NspI	RCATGY	3 cut(s)	148, 419, 1139
PaeI	GCATGC	1 cut(s)	419
PaeR7I	CTCGAG	2 cut(s)	983, 1089
PagI	TCATGA	1 cut(s)	339
PciI	ACATGT	1 cut(s)	144
PciSI	GCTCTTC	2 cut(s)	690, 861
PfeI	GAWTC	7 cut(s)	16, 283, 508, 533, 1017, 1127, 1473
PflMI	CCANNNNNTGG	1 cut(s)	947
PfoI	TCCNGGA	1 cut(s)	874
PkrI	GCNGC	3 cut(s)	118, 682, 1445
PleI	GAGTC	2 cut(s)	1050, 1100
PpsI	GAGTC	2 cut(s)	1050, 1100
PpuMI	RGGWCCY	1 cut(s)	1213
PscI	ACATGT	1 cut(s)	144
PsiI	TTATAA	1 cut(s)	992
Psp1406I	AACGTT	1 cut(s)	486
Psp5II	RGGWCCY	1 cut(s)	1213
Psp6I	CCWGG	2 cut(s)	874, 931
PspFI	CCCAGC	3 cut(s)	554, 575, 1111
PspGI	CCWGG	2 cut(s)	874, 931
PspN4I	GGNNCC	2 cut(s)	130, 1215
PspPI	GGNCC	3 cut(s)	590, 1213, 1454
PspPPI	RGGWCCY	1 cut(s)	1213
PspXI	VCTCGAGB	1 cut(s)	1089
PsuI	RGATCY	3 cut(s)	75, 392, 1308
RsaI	GTAC	2 cut(s)	368, 1403
RsaNI	GTAC	2 cut(s)	367, 1402
RseI	CAYNNNNRTG	1 cut(s)	420
SapI	GCTCTTC	2 cut(s)	690, 861
SaqAI	TTAA	4 cut(s)	138, 327, 447, 1046
SatI	GCNGC	3 cut(s)	117, 681, 1444
Sau3AI	GATC	8 cut(s)	75, 173, 392, 845, 964, 1193, 1308, 1423
Sau96I	GGNCC	3 cut(s)	590, 1213, 1454
SchI	GAGTC	2 cut(s)	1050, 1101
ScrFI	CCNGG	3 cut(s)	876, 895, 933
SexAI	ACCWGGT	1 cut(s)	931
SfaNI	GCATC	2 cut(s)	592, 880
Sfr274I	CTCGAG	2 cut(s)	983, 1089
SinI	GGWCC	2 cut(s)	1213, 1454
SlaI	CTCGAG	2 cut(s)	983, 1089
SmiMI	CAYNNNNRTG	1 cut(s)	420
SmlI	CTYRAG	4 cut(s)	111, 158, 983, 1089
SmoI	CTYRAG	4 cut(s)	111, 158, 983, 1089
SphI	GCATGC	1 cut(s)	419
Sse9I	AATT	2 cut(s)	185, 820
SsiI	CCGC	2 cut(s)	680, 1321
SspMI	CTAG	2 cut(s)	1004, 1477
StyD4I	CCNGG	3 cut(s)	874, 893, 931
StyI	CCWWGG	1 cut(s)	921
TaaI	ACNGT	5 cut(s)	244, 716, 841, 1387, 1406
TaiI	ACGT	1 cut(s)	489
TaqI	TCGA	6 cut(s)	237, 286, 666, 984, 1090, 1471
TasI	AATT	2 cut(s)	185, 820
TatI	WGTACW	2 cut(s)	366, 1401
TauI	GCSGC	1 cut(s)	683
TfiI	GAWTC	7 cut(s)	16, 283, 508, 533, 1017, 1127, 1473
Tru1I	TTAA	4 cut(s)	138, 327, 447, 1046
Tru9I	TTAA	4 cut(s)	138, 327, 447, 1046
TscAI	CASTG	1 cut(s)	709
TseFI	GTSAC	1 cut(s)	716
TseI	GCWGC	2 cut(s)	116, 1443
Tsp45I	GTSAC	1 cut(s)	716
TspDTI	ATGAA	4 cut(s)	336, 356, 876, 1223
TspRI	CASTG	1 cut(s)	709
Van91I	CCANNNNNTGG	1 cut(s)	947
VpaK11BI	GGWCC	2 cut(s)	1213, 1454
XapI	RAATTY	1 cut(s)	820
XceI	RCATGY	3 cut(s)	148, 419, 1139
XcmI	CCANNNNNNNNNTGG	1 cut(s)	812
XhoI	CTCGAG	2 cut(s)	983, 1089
XspI	CTAG	2 cut(s)	1004, 1477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.