RLG00000033228

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0010007
Physical Location & Seq
Reverse (-)
24641092 .. 24645627
4536 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033228

Sequence Viewer

Length: 1431 bp
ATGACAAGTTCCCTTTTCTTCATCACCATCGTCACTCTCACAGTCGCTTACACCCTCCAATTCGAAGCCCATGCTGCTCCTGCAGGGCCATTGATAAAGCACTTGTCTTCCCTTGTCAAGTGGACTAGGGCGGCGTCCGCCAAAGCACCCCAATCAGATGGGAATGTTGTTCAGTTTGAGAGTGGGTACTTAGTTGAGACTGTTGTGGAAGGAACTGATATTGGAGTTGTTCCTTTCAAGATCCGCATTTCAGAGGATGGCGAACTCTTCGCTGTGGACTCCGTTAATAGCAACATTGTTCGGATTACTCCTCCGTTGTCCCAATACAGTAGGGGAAGATTGGTTGCTGGATCATTTCAGGGTTATACAGGCCATGTTGATGGAAAGCCAAGTGATGCTCGTTTCAATCATCCAAAAGGTGTAACCATGGATGATAAAGGGAATGTATATGTTGCTGATACCTTGAATCACGCCATAAGAAAAATTGGAGAAGCTGGTGTGACAACCATAGCTGGTGGAAAATCAAATATTGCTGGCTACAGGGATGGACCCAGTGAAGATGCAATGTTCTCAAACGATTTTGATGTAGTATATGTCCAGCCTACTTGTTCCTTGCTTGTTGTTGATAGAGGAAATGCTGCTCTTAGGCAGATATCTCTCAACCAGGAGGATTGTGATTATCAGTACAGTTCAATCTCTTCCACAGATGTCCTTATGGTTGTTGGTGCCGTCTTGATAGGCTATGCTACATGCATGCTTCAGCAGGGATTTGGACCTTCTTTCTTCTCGAGAACGCAACCTTCAGAGAGTGAAACTAAAGAACATCCAAACAATGAAAAATCCACTCCAGTTGTGGAGATTGTGAAAGAGGACCCAGGATGGCCATCTTTTGGGCAGCTTATAATTGATCTATGCAAGGTTGGACTTGAAGCAGTGACGGGCACATTTCTTCAGTTCATTCCCACTCGGTTCATGCCTGGTGGTTCTCACAAAGGCCTGACACCATTAAAAGATTCTCTCAGGATGCCTGAGGATGAAGCTGAGACCCCGTTAGTTCACAGGCAAAGCACTCCTGCTCCTCTGTCTGAAACTCGGCAGTCCCATACTCCCAATGCAAGTGATAGATATTCAGATATGAAGCCCTCAAAGATAAAGTCAAGTAGCTTTAAAGACCCCTCTTTGCCAAGCAAACACCGGTCTTCAAAACGCCAGGATTCTGCAGAATTCTATGGATCTGGTGAAAGGTCTAAGAGCCAGAAAGAAAGAACAAGGCATCGCCAACGAGAGAAGAGTGGAGAGGTAGTTTTTGGGGCTGTTGGGACACAACCGAAACCTGTGGACATGAAGACAGCAGCAGCTTATGACAATCAGAAGTTTGAGAACTACAATATGAGGAGCAGGTATGGACCTGACAATTCATACCGGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NHL

Protein Analysis

477

Amino Acids

52.2

Weight (kDa)

6.85

Isoelectric Point (pI)

36.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NHL PF01436 135 - 161 6e-06 NHL repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 902
Acc36I ACCTGC 1 cut(s) 1389
AccB1I GGYRCC 1 cut(s) 725
AccB7I CCANNNNNTGG 1 cut(s) 890
AciI CCGC 3 cut(s) 131, 138, 244
AclWI GGATC 3 cut(s) 235, 358, 1240
AcoI YGGCCR 1 cut(s) 881
AcsI RAATTY 1 cut(s) 1223
AcuI CTGAAG 3 cut(s) 743, 786, 935
AcyI GRCGYC 1 cut(s) 134
AfaI GTAC 2 cut(s) 188, 686
AfiI CCNNNNNNNGG 1 cut(s) 890
AgeI ACCGGT 2 cut(s) 1194, 1422
AgsI TTSAA 6 cut(s) 238, 406, 466, 693, 929, 1203
AjnI CCWGG 4 cut(s) 663, 874, 976, 1209
AluBI AGCT 6 cut(s) 494, 512, 898, 1040, 1164, 1358
AluI AGCT 6 cut(s) 494, 512, 898, 1040, 1164, 1358
Alw26I GTCTC 2 cut(s) 191, 1037
AlwI GGATC 3 cut(s) 235, 358, 1240
Ama87I CYCGRG 1 cut(s) 787
AoxI GGCC 4 cut(s) 86, 370, 881, 994
ApeKI GCWGC 5 cut(s) 74, 638, 895, 1352, 1355
ApoI RAATTY 1 cut(s) 1223
ArsI GACNNNNNNTTYG 2 cut(s) 1139, 1171
AsiGI ACCGGT 2 cut(s) 1194, 1422
AspS9I GGNCC 5 cut(s) 86, 548, 773, 871, 1406
AsuHPI GGTGA 2 cut(s) 16, 1250
AsuII TTCGAA 1 cut(s) 63
AvaI CYCGRG 1 cut(s) 787
AvaII GGWCC 4 cut(s) 548, 773, 871, 1406
AxyI CCTNAGG 1 cut(s) 1029
BaeGI GKGCMC 1 cut(s) 944
BalI TGGCCA 1 cut(s) 883
BanI GGYRCC 1 cut(s) 725
BbsI GAAGAC 3 cut(s) 99, 1191, 1352
BbvI GCAGC 5 cut(s) 61, 625, 907, 1364, 1367
BccI CCATC 7 cut(s) 35, 152, 251, 374, 539, 873, 892
BceAI ACGGC 1 cut(s) 713
BcgI CGANNNNNNTGC 2 cut(s) 53, 87
BciT130I CCWGG 4 cut(s) 665, 876, 978, 1211
BcoDI GTCTC 2 cut(s) 191, 1037
BfaI CTAG 1 cut(s) 126
BfmI CTRYAG 3 cut(s) 81, 538, 1218
BfuAI ACCTGC 1 cut(s) 1389
BisI GCNGC 6 cut(s) 75, 132, 639, 896, 1353, 1356
BlsI GCNGC 6 cut(s) 76, 133, 640, 897, 1354, 1357
Bme1390I CCNGG 4 cut(s) 665, 876, 978, 1211
Bme18I GGWCC 4 cut(s) 548, 773, 871, 1406
BmeT110I CYCGRG 1 cut(s) 787
BmgT120I GGNCC 5 cut(s) 86, 548, 773, 871, 1406
BmiI GGNNCC 3 cut(s) 550, 727, 873
BmrFI CCNGG 4 cut(s) 665, 876, 978, 1211
BmrI ACTGGG 1 cut(s) 546
BmsI GCATC 4 cut(s) 385, 550, 1014, 1282
BmuI ACTGGG 1 cut(s) 546
BpiI GAAGAC 3 cut(s) 99, 1191, 1352
BpmI CTGGAG 1 cut(s) 831
Bpu14I TTCGAA 1 cut(s) 63
BsaBI GATNNNNATC 1 cut(s) 883
BsaHI GRCGYC 1 cut(s) 134
BsaI GGTCTC 1 cut(s) 1037
BsaJI CCNNGG 2 cut(s) 426, 874
BsaWI WCCGGW 2 cut(s) 1194, 1422
BsaXI ACNNNNNCTCC 4 cut(s) 1060, 1090, 1287, 1317
Bsc4I CCNNNNNNNGG 1 cut(s) 890
Bse118I RCCGGY 2 cut(s) 1194, 1422
Bse1I ACTGG 2 cut(s) 552, 848
Bse21I CCTNAGG 1 cut(s) 1029
Bse3DI GCAATG 1 cut(s) 570
Bse8I GATNNNNATC 1 cut(s) 883
BseBI CCWGG 4 cut(s) 665, 876, 978, 1211
BseDI CCNNGG 2 cut(s) 426, 874
BseGI GGATG 8 cut(s) 262, 409, 436, 550, 823, 884, 1029, 1039
BseJI GATNNNNATC 1 cut(s) 883
BseLI CCNNNNNNNGG 1 cut(s) 890
BseMI GCAATG 1 cut(s) 570
BseMII CTCAG 3 cut(s) 1020, 1032, 1033
BseNI ACTGG 2 cut(s) 552, 848
BseRI GAGGAG 3 cut(s) 300, 1068, 1408
BseSI GKGCMC 1 cut(s) 944
BseXI GCAGC 5 cut(s) 61, 625, 907, 1364, 1367
BshFI GGCC 4 cut(s) 88, 372, 883, 996
BshNI GGYRCC 1 cut(s) 725
BshTI ACCGGT 2 cut(s) 1194, 1422
BsiHKCI CYCGRG 1 cut(s) 787
BsiSI CCGG 2 cut(s) 1195, 1423
BslFI GGGAC 3 cut(s) 304, 1084, 1333
BslI CCNNNNNNNGG 1 cut(s) 890
BsmAI GTCTC 2 cut(s) 191, 1037
BsmFI GGGAC 3 cut(s) 304, 1084, 1333
BsnI GGCC 4 cut(s) 88, 372, 883, 996
Bso31I GGTCTC 1 cut(s) 1037
BsoBI CYCGRG 1 cut(s) 787
Bsp119I TTCGAA 1 cut(s) 63
Bsp1286I GDGCHC 1 cut(s) 944
Bsp143I GATC 4 cut(s) 240, 350, 907, 1232
Bsp19I CCATGG 1 cut(s) 426
BspACI CCGC 3 cut(s) 131, 138, 244
BspANI GGCC 4 cut(s) 88, 372, 883, 996
BspCNI CTCAG 3 cut(s) 1021, 1032, 1033
BspLI GGNNCC 3 cut(s) 550, 727, 873
BspMAI CTGCAG 2 cut(s) 85, 1222
BspMI ACCTGC 1 cut(s) 1389
BspPI GGATC 3 cut(s) 235, 358, 1240
BspT104I TTCGAA 1 cut(s) 63
BspT107I GGYRCC 1 cut(s) 725
BspTNI GGTCTC 1 cut(s) 1037
BsrDI GCAATG 1 cut(s) 570
BsrFI RCCGGY 2 cut(s) 1194, 1422
BsrI ACTGG 2 cut(s) 552, 848
BssAI RCCGGY 2 cut(s) 1194, 1422
BssECI CCNNGG 2 cut(s) 426, 874
BssMI GATC 4 cut(s) 240, 350, 907, 1232
BssNI GRCGYC 1 cut(s) 134
BssT1I CCWWGG 1 cut(s) 426
Bst2UI CCWGG 4 cut(s) 665, 876, 978, 1211
Bst4CI ACNGT 4 cut(s) 43, 202, 329, 689
Bst6I CTCTTC 3 cut(s) 272, 703, 1283
BstACI GRCGYC 1 cut(s) 134
BstBI TTCGAA 1 cut(s) 63
BstC8I GCNNGC 2 cut(s) 535, 755
BstDEI CTNAG 6 cut(s) 190, 644, 1019, 1029, 1041, 1248
BstDSI CCRYGG 1 cut(s) 426
BstF5I GGATG 8 cut(s) 262, 409, 436, 550, 823, 884, 1029, 1039
BstKTI GATC 4 cut(s) 243, 353, 910, 1235
BstMAI GTCTC 2 cut(s) 191, 1037
BstMBI GATC 4 cut(s) 240, 350, 907, 1232
BstMWI GCNNNNNNNGC 3 cut(s) 74, 80, 137
BstNI CCWGG 4 cut(s) 665, 876, 978, 1211
BstNSI RCATGY 2 cut(s) 753, 757
BstSCI CCNGG 4 cut(s) 663, 874, 976, 1209
BstSFI CTRYAG 3 cut(s) 81, 538, 1218
BstSLI GKGCMC 1 cut(s) 944
BstV1I GCAGC 5 cut(s) 61, 625, 907, 1364, 1367
BstV2I GAAGAC 3 cut(s) 99, 1191, 1352
BstX2I RGATCY 2 cut(s) 240, 1232
BstXI CCANNNNNNTGG 2 cut(s) 158, 380
BstYI RGATCY 2 cut(s) 240, 1232
Bsu36I CCTNAGG 1 cut(s) 1029
BsuRI GGCC 4 cut(s) 88, 372, 883, 996
BtgI CCRYGG 1 cut(s) 426
BtgZI GCGATG 1 cut(s) 1259
BtsCI GGATG 8 cut(s) 262, 409, 436, 550, 823, 884, 1029, 1039
BtsI GCAGTG 1 cut(s) 939
BtsIMutI CAGTG 2 cut(s) 559, 939
BveI ACCTGC 1 cut(s) 1389
Cac8I GCNNGC 2 cut(s) 535, 755
Cfr10I RCCGGY 2 cut(s) 1194, 1422
Cfr13I GGNCC 5 cut(s) 86, 548, 773, 871, 1406
CseI GACGC 1 cut(s) 123
Csp6I GTAC 2 cut(s) 187, 685
CspAI ACCGGT 2 cut(s) 1194, 1422
CspCI CAANNNNNGTGG 2 cut(s) 832, 867
CviAII CATG 7 cut(s) 71, 374, 427, 750, 754, 973, 1342
CviQI GTAC 2 cut(s) 187, 685
DdeI CTNAG 6 cut(s) 190, 644, 1019, 1029, 1041, 1248
DpnI GATC 4 cut(s) 242, 352, 909, 1234
DpnII GATC 4 cut(s) 240, 350, 907, 1232
DraI TTTAAA 1 cut(s) 1168
EaeI YGGCCR 1 cut(s) 881
Eam1104I CTCTTC 3 cut(s) 272, 703, 1283
EarI CTCTTC 3 cut(s) 272, 703, 1283
EciI GGCGGA 1 cut(s) 127
Eco130I CCWWGG 1 cut(s) 426
Eco147I AGGCCT 1 cut(s) 996
Eco31I GGTCTC 1 cut(s) 1037
Eco32I GATATC 1 cut(s) 654
Eco47I GGWCC 4 cut(s) 548, 773, 871, 1406
Eco57I CTGAAG 3 cut(s) 743, 786, 935
Eco81I CCTNAGG 1 cut(s) 1029
Eco88I CYCGRG 1 cut(s) 787
EcoO109I RGGNCCY 1 cut(s) 871
EcoRI GAATTC 1 cut(s) 1223
EcoRII CCWGG 4 cut(s) 663, 874, 976, 1209
EcoRV GATATC 1 cut(s) 654
EcoT14I CCWWGG 1 cut(s) 426
EcoT22I ATGCAT 1 cut(s) 755
ErhI CCWWGG 1 cut(s) 426
FaeI CATG 7 cut(s) 74, 377, 430, 753, 757, 976, 1345
FaqI GGGAC 3 cut(s) 304, 1084, 1333
FatI CATG 7 cut(s) 70, 373, 426, 749, 753, 972, 1341
Fnu4HI GCNGC 6 cut(s) 75, 132, 639, 896, 1353, 1356
FokI GGATG 8 cut(s) 269, 396, 443, 557, 810, 891, 1036, 1046
Fsp4HI GCNGC 6 cut(s) 75, 132, 639, 896, 1353, 1356
FspBI CTAG 1 cut(s) 126
GluI GCNGC 6 cut(s) 75, 132, 639, 896, 1353, 1356
GsuI CTGGAG 1 cut(s) 831
HaeIII GGCC 4 cut(s) 88, 372, 883, 996
HapII CCGG 2 cut(s) 1195, 1423
HgaI GACGC 1 cut(s) 123
Hin1I GRCGYC 1 cut(s) 134
Hin1II CATG 7 cut(s) 74, 377, 430, 753, 757, 976, 1345
HinfI GANTC 4 cut(s) 278, 466, 1013, 1214
HpaII CCGG 2 cut(s) 1195, 1423
HphI GGTGA 2 cut(s) 16, 1250
Hpy166II GTNNAC 4 cut(s) 123, 277, 1057, 1339
Hpy188I TCNGA 7 cut(s) 157, 253, 303, 805, 1087, 1132, 1371
Hpy188III TCNNGA 5 cut(s) 238, 733, 787, 789, 1021
Hpy8I GTNNAC 4 cut(s) 123, 277, 1057, 1339
HpyAV CCTTC 3 cut(s) 203, 786, 810
HpyCH4III ACNGT 4 cut(s) 43, 202, 329, 689
HpyCH4V TGCA 6 cut(s) 83, 563, 753, 915, 1115, 1220
HpyF10VI GCNNNNNNNGC 3 cut(s) 74, 80, 137
HpyF3I CTNAG 6 cut(s) 190, 644, 1019, 1029, 1041, 1248
Hsp92I GRCGYC 1 cut(s) 134
Hsp92II CATG 7 cut(s) 74, 377, 430, 753, 757, 976, 1345
Kzo9I GATC 4 cut(s) 240, 350, 907, 1232
LmnI GCTCC 3 cut(s) 82, 1081, 1395
Lsp1109I GCAGC 5 cut(s) 61, 625, 907, 1364, 1367
LweI GCATC 4 cut(s) 385, 550, 1014, 1282
MaeI CTAG 1 cut(s) 126
MaeIII GTNAC 4 cut(s) 31, 421, 499, 934
MalI GATC 4 cut(s) 242, 352, 909, 1234
MboI GATC 4 cut(s) 240, 350, 907, 1232
MflI RGATCY 2 cut(s) 240, 1232
MhlI GDGCHC 1 cut(s) 944
MlsI TGGCCA 1 cut(s) 883
MluCI AATT 5 cut(s) 59, 483, 903, 1223, 1414
MluNI TGGCCA 1 cut(s) 883
MlyI GAGTC 1 cut(s) 272
MmeI TCCRAC 1 cut(s) 901
Mox20I TGGCCA 1 cut(s) 883
Mph1103I ATGCAT 1 cut(s) 755
MscI TGGCCA 1 cut(s) 883
MseI TTAA 4 cut(s) 285, 1007, 1167, 1429
MslI CAYNNNNRTG 1 cut(s) 378
Msp20I TGGCCA 1 cut(s) 883
MspI CCGG 2 cut(s) 1195, 1423
MspR9I CCNGG 4 cut(s) 665, 876, 978, 1211
MvaI CCWGG 4 cut(s) 665, 876, 978, 1211
MwoI GCNNNNNNNGC 3 cut(s) 74, 80, 137
NcoI CCATGG 1 cut(s) 426
NdeII GATC 4 cut(s) 240, 350, 907, 1232
NlaIII CATG 7 cut(s) 74, 377, 430, 753, 757, 976, 1345
NlaIV GGNNCC 3 cut(s) 550, 727, 873
NmeAIII GCCGAG 1 cut(s) 1072
NmuCI GTSAC 3 cut(s) 31, 499, 934
NsiI ATGCAT 1 cut(s) 755
NspI RCATGY 2 cut(s) 753, 757
NspV TTCGAA 1 cut(s) 63
PaeI GCATGC 1 cut(s) 757
PaeR7I CTCGAG 1 cut(s) 787
PceI AGGCCT 1 cut(s) 996
PfeI GAWTC 3 cut(s) 466, 1013, 1214
PflMI CCANNNNNTGG 1 cut(s) 890
PinAI ACCGGT 2 cut(s) 1194, 1422
PkrI GCNGC 6 cut(s) 76, 133, 640, 897, 1354, 1357
PleI GAGTC 1 cut(s) 272
PpsI GAGTC 1 cut(s) 272
PpuMI RGGWCCY 1 cut(s) 871
PsiI TTATAA 1 cut(s) 902
Psp5II RGGWCCY 1 cut(s) 871
Psp6I CCWGG 4 cut(s) 663, 874, 976, 1209
PspGI CCWGG 4 cut(s) 663, 874, 976, 1209
PspN4I GGNNCC 3 cut(s) 550, 727, 873
PspPI GGNCC 5 cut(s) 86, 548, 773, 871, 1406
PspPPI RGGWCCY 1 cut(s) 871
PstI CTGCAG 2 cut(s) 85, 1222
PsuI RGATCY 2 cut(s) 240, 1232
RsaI GTAC 2 cut(s) 188, 686
RsaNI GTAC 2 cut(s) 187, 685
RseI CAYNNNNRTG 1 cut(s) 378
SaqAI TTAA 4 cut(s) 285, 1007, 1167, 1429
SatI GCNGC 6 cut(s) 75, 132, 639, 896, 1353, 1356
Sau3AI GATC 4 cut(s) 240, 350, 907, 1232
Sau96I GGNCC 5 cut(s) 86, 548, 773, 871, 1406
SbfI CCTGCAGG 1 cut(s) 85
SchI GAGTC 1 cut(s) 272
ScrFI CCNGG 4 cut(s) 665, 876, 978, 1211
SdaI CCTGCAGG 1 cut(s) 85
SduI GDGCHC 1 cut(s) 944
SfaNI GCATC 4 cut(s) 385, 550, 1014, 1282
SfcI CTRYAG 3 cut(s) 81, 538, 1218
Sfr274I CTCGAG 1 cut(s) 787
SfuI TTCGAA 1 cut(s) 63
SinI GGWCC 4 cut(s) 548, 773, 871, 1406
SlaI CTCGAG 1 cut(s) 787
SmiMI CAYNNNNRTG 1 cut(s) 378
SmlI CTYRAG 1 cut(s) 787
SmoI CTYRAG 1 cut(s) 787
SphI GCATGC 1 cut(s) 757
Sse8387I CCTGCAGG 1 cut(s) 85
Sse9I AATT 5 cut(s) 59, 483, 903, 1223, 1414
SseBI AGGCCT 1 cut(s) 996
SsiI CCGC 3 cut(s) 131, 138, 244
SspI AATATT 1 cut(s) 529
SspMI CTAG 1 cut(s) 126
StuI AGGCCT 1 cut(s) 996
StyD4I CCNGG 4 cut(s) 663, 874, 976, 1209
StyI CCWWGG 1 cut(s) 426
TaaI ACNGT 4 cut(s) 43, 202, 329, 689
TaqI TCGA 2 cut(s) 63, 788
TasI AATT 5 cut(s) 59, 483, 903, 1223, 1414
TatI WGTACW 1 cut(s) 684
TauI GCSGC 1 cut(s) 134
TfiI GAWTC 3 cut(s) 466, 1013, 1214
Tru1I TTAA 4 cut(s) 285, 1007, 1167, 1429
Tru9I TTAA 4 cut(s) 285, 1007, 1167, 1429
TscAI CASTG 2 cut(s) 559, 939
TseFI GTSAC 3 cut(s) 31, 499, 934
TseI GCWGC 5 cut(s) 74, 638, 895, 1352, 1355
Tsp45I GTSAC 3 cut(s) 31, 499, 934
TspDTI ATGAA 8 cut(s) 10, 849, 946, 961, 1050, 1151, 1358, 1407
TspGWI ACGGA 2 cut(s) 271, 303
TspRI CASTG 2 cut(s) 559, 939
Van91I CCANNNNNTGG 1 cut(s) 890
VpaK11BI GGWCC 4 cut(s) 548, 773, 871, 1406
XapI RAATTY 1 cut(s) 1223
XceI RCATGY 2 cut(s) 753, 757
XcmI CCANNNNNNNNNTGG 1 cut(s) 850
XhoI CTCGAG 1 cut(s) 787
XspI CTAG 1 cut(s) 126
Zsp2I ATGCAT 1 cut(s) 755
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.