AT3G15260

phosphatase 2C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011687
Physical Location & Seq
Forward (+)
5138684 .. 5142873
4190 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G15260.1

Sequence Viewer

Length: 870 bp
ATGACCGGTAGAGAAATCCTCCACAAGATGAAGGAATCCGTCAAGGAGAAAGTTGGGCTTGGTGCATCTGCTTCATCTGCAGATTCAGGGAAAGGTAAGAGCAAGATGTTGAAGCAGATCACACATGGTTTTCATTTGGTGAAAGGGAAAGCTTTTCACGAGATGGAAGATTATGTGGTTGCCAAATTCAAGGAAGTTGATGATAATGAGCTTGGTCTGTTTGCTATCTTCGATGGCCATCTTAGCCACGAGATTCCGGACTACTTGTGCTCCCATTTGTTTGAGAACATCTTGAAAGAGCCGAATTTCTGGCAAGAACCTGAGAAAGCGATAAAGAAAGCTTACTATATAACGGATACAACGATTCTAGACAAGGCAGATGATTTGGGAAAAGGAGGTTCTACTGCTGTGACTGCGATATTGATCAATTGCCAGAAGCTGGTGGTTGCTAATGTTGGTGACTCTCGAGCTGTTATTTGCCAAAATGGTGTTGCGAAGCCACTCTCAGTTGATCATGAGCCGAACATGGAGAAGGATGAAATCGAGAACAGAGGAGGATTCGTTTCTAACTTTCCTGGGGATGTTCCTCGAGTTGATGGTCAACTGGCTGTGGCAAGGGCATTTGGTGATAAGAGTTTAAAGATGCATTTGAGTTCAGAACCATATGTTACGGTGGAGATAATTGATGATGATGCAGAATTTCTTATCCTAGCAAGTGATGGACTATGGAAGGTCATGTCAAACCAAGAAGCCGTTGACTCAATCAAGGGAATAAAAGATGCGAAGGCTGCAGCAAAGCACCTTGCAGAGGAGGCTGTTGCAAGGAAAAGCTCAGACGATATCTCAGTCGTCGTCGTGAAATTTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

289

Amino Acids

31.63

Weight (kDa)

5.51

Isoelectric Point (pI)

28.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 51 - 281 4.7e-55 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011687)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15260 AT3G15260
fragaria_vesca FvH4_3g19640 FvH4_3g19640
malus_domestica MD03G1230700.v1.1 MD11G1251900.v1.1
prunus_persica Prupe.4G177100_v2.0.a1
pyrus_communis pycom03g17840 pycom11g22340
rosa_chinensis RchiOBHm_Chr5g0032841
rosa_laevigata RLG00000033433
rosa_multiflora Rmu_sc0000986.1_g000035
rosa_roxburghii Rroxscaffold_1G00047190
rosa_rugosa Rorug05G0134100
rosa_samantha Rh5AG227000 Rh5BG228300 Rh5CG256100 Rh5DG233100
rosa_wichuraiana Rw5G020810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 439
AccIII TCCGGA 1 cut(s) 256
AcoI YGGCCR 1 cut(s) 235
AcsI RAATTY 4 cut(s) 185, 304, 698, 860
AfiI CCNNNNNNNGG 2 cut(s) 439, 808
AgeI ACCGGT 1 cut(s) 5
AgsI TTSAA 3 cut(s) 112, 190, 295
AjnI CCWGG 1 cut(s) 574
AluBI AGCT 6 cut(s) 152, 211, 341, 439, 470, 831
AluI AGCT 6 cut(s) 152, 211, 341, 439, 470, 831
Alw21I GWGCWC 1 cut(s) 272
AlwNI CAGNNNCTG 1 cut(s) 439
Ama87I CYCGRG 2 cut(s) 465, 588
Aor13HI TCCGGA 1 cut(s) 256
AoxI GGCC 1 cut(s) 235
ApeKI GCWGC 2 cut(s) 788, 791
ApoI RAATTY 4 cut(s) 185, 304, 698, 860
AsiGI ACCGGT 1 cut(s) 5
AsuHPI GGTGA 3 cut(s) 151, 470, 638
AvaI CYCGRG 2 cut(s) 465, 588
BalI TGGCCA 1 cut(s) 237
BauI CACGAG 2 cut(s) 158, 248
Bbv12I GWGCWC 1 cut(s) 272
BbvI GCAGC 2 cut(s) 775, 803
BccI CCATC 5 cut(s) 157, 227, 246, 590, 713
BceAI ACGGC 1 cut(s) 737
BciT130I CCWGG 1 cut(s) 576
BciVI GTATCC 1 cut(s) 349
BclI TGATCA 2 cut(s) 423, 511
BfaI CTAG 2 cut(s) 368, 710
BfmI CTRYAG 2 cut(s) 78, 789
BfuI GTATCC 1 cut(s) 349
BisI GCNGC 2 cut(s) 789, 792
BlsI GCNGC 2 cut(s) 790, 793
Bme1390I CCNGG 1 cut(s) 576
BmeT110I CYCGRG 2 cut(s) 465, 588
BmrFI CCNGG 1 cut(s) 576
BmsI GCATC 4 cut(s) 74, 633, 682, 769
BplI GAGNNNNNCTC 1 cut(s) 35
BsaBI GATNNNNATC 2 cut(s) 237, 422
BsaJI CCNNGG 1 cut(s) 575
BsaWI WCCGGW 2 cut(s) 5, 256
BsaXI ACNNNNNCTCC 4 cut(s) 254, 284, 546, 576
Bsc4I CCNNNNNNNGG 2 cut(s) 439, 808
Bse118I RCCGGY 1 cut(s) 5
Bse1I ACTGG 1 cut(s) 609
Bse8I GATNNNNATC 2 cut(s) 237, 422
BseAI TCCGGA 1 cut(s) 256
BseBI CCWGG 1 cut(s) 576
BseDI CCNNGG 1 cut(s) 575
BseGI GGATG 2 cut(s) 541, 586
BseJI GATNNNNATC 2 cut(s) 237, 422
BseLI CCNNNNNNNGG 2 cut(s) 439, 808
BseMII CTCAG 4 cut(s) 312, 519, 846, 858
BseNI ACTGG 1 cut(s) 609
BseRI GAGGAG 2 cut(s) 567, 824
BseXI GCAGC 2 cut(s) 775, 803
BshFI GGCC 1 cut(s) 237
BshTI ACCGGT 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 272
BsiHKCI CYCGRG 2 cut(s) 465, 588
BsiSI CCGG 2 cut(s) 6, 257
BslI CCNNNNNNNGG 2 cut(s) 439, 808
BsnI GGCC 1 cut(s) 237
BsoBI CYCGRG 2 cut(s) 465, 588
Bsp1286I GDGCHC 1 cut(s) 272
Bsp13I TCCGGA 1 cut(s) 256
Bsp143I GATC 3 cut(s) 117, 423, 511
BspANI GGCC 1 cut(s) 237
BspCNI CTCAG 4 cut(s) 313, 518, 845, 857
BspEI TCCGGA 1 cut(s) 256
BspHI TCATGA 1 cut(s) 514
BspMAI CTGCAG 2 cut(s) 82, 793
BsrFI RCCGGY 1 cut(s) 5
BsrI ACTGG 1 cut(s) 609
BssAI RCCGGY 1 cut(s) 5
BssECI CCNNGG 1 cut(s) 575
BssMI GATC 3 cut(s) 117, 423, 511
BssSI CACGAG 2 cut(s) 158, 248
Bst2BI CACGAG 2 cut(s) 158, 248
Bst2UI CCWGG 1 cut(s) 576
Bst4CI ACNGT 1 cut(s) 673
BstDEI CTNAG 5 cut(s) 242, 321, 505, 832, 844
BstENI CCTNNNNNAGG 1 cut(s) 806
BstF5I GGATG 2 cut(s) 541, 586
BstKTI GATC 3 cut(s) 120, 426, 514
BstMBI GATC 3 cut(s) 117, 423, 511
BstMWI GCNNNNNNNGC 5 cut(s) 77, 243, 413, 788, 812
BstNI CCWGG 1 cut(s) 576
BstSCI CCNGG 1 cut(s) 574
BstSFI CTRYAG 2 cut(s) 78, 789
BstV1I GCAGC 2 cut(s) 775, 803
BsuI GTATCC 1 cut(s) 349
BsuRI GGCC 1 cut(s) 237
BtsCI GGATG 2 cut(s) 541, 586
CaiI CAGNNNCTG 1 cut(s) 439
CciI TCATGA 1 cut(s) 514
Cfr10I RCCGGY 1 cut(s) 5
CspAI ACCGGT 1 cut(s) 5
CviAII CATG 4 cut(s) 125, 515, 526, 736
DdeI CTNAG 5 cut(s) 242, 321, 505, 832, 844
DpnI GATC 3 cut(s) 119, 425, 513
DpnII GATC 3 cut(s) 117, 423, 511
DraI TTTAAA 1 cut(s) 639
EaeI YGGCCR 1 cut(s) 235
Eco32I GATATC 1 cut(s) 841
Eco88I CYCGRG 2 cut(s) 465, 588
EcoNI CCTNNNNNAGG 1 cut(s) 806
EcoRII CCWGG 1 cut(s) 574
EcoRV GATATC 1 cut(s) 841
EcoT22I ATGCAT 1 cut(s) 648
FaeI CATG 4 cut(s) 128, 518, 529, 739
FalI AAGNNNNNCTT 2 cut(s) 42, 74
FatI CATG 4 cut(s) 124, 514, 525, 735
FauNDI CATATG 1 cut(s) 664
FbaI TGATCA 2 cut(s) 423, 511
Fnu4HI GCNGC 2 cut(s) 789, 792
FokI GGATG 2 cut(s) 548, 593
Fsp4HI GCNGC 2 cut(s) 789, 792
FspBI CTAG 2 cut(s) 368, 710
GluI GCNGC 2 cut(s) 789, 792
HaeIII GGCC 1 cut(s) 237
HapII CCGG 2 cut(s) 6, 257
Hin1II CATG 4 cut(s) 128, 518, 529, 739
HincII GTYRAC 2 cut(s) 602, 757
HindII GTYRAC 2 cut(s) 602, 757
HindIII AAGCTT 2 cut(s) 150, 339
HinfI GANTC 7 cut(s) 35, 83, 253, 364, 461, 558, 758
HpaII CCGG 2 cut(s) 6, 257
HphI GGTGA 3 cut(s) 151, 470, 638
Hpy166II GTNNAC 2 cut(s) 602, 757
Hpy188I TCNGA 2 cut(s) 658, 835
Hpy188III TCNNGA 8 cut(s) 158, 257, 292, 368, 465, 515, 544, 856
Hpy8I GTNNAC 2 cut(s) 602, 757
Hpy99I CGWCG 2 cut(s) 854, 857
HpyAV CCTTC 4 cut(s) 25, 526, 724, 778
HpyCH4III ACNGT 1 cut(s) 673
HpyCH4V TGCA 7 cut(s) 65, 80, 646, 695, 791, 806, 821
HpyF10VI GCNNNNNNNGC 5 cut(s) 77, 243, 413, 788, 812
HpyF3I CTNAG 5 cut(s) 242, 321, 505, 832, 844
Hsp92II CATG 4 cut(s) 128, 518, 529, 739
Kpn2I TCCGGA 1 cut(s) 256
Ksp22I TGATCA 2 cut(s) 423, 511
Kzo9I GATC 3 cut(s) 117, 423, 511
LmnI GCTCC 1 cut(s) 275
Lsp1109I GCAGC 2 cut(s) 775, 803
LweI GCATC 4 cut(s) 74, 633, 682, 769
MaeI CTAG 2 cut(s) 368, 710
MaeIII GTNAC 3 cut(s) 409, 458, 667
MalI GATC 3 cut(s) 119, 425, 513
MboI GATC 3 cut(s) 117, 423, 511
MboII GAAGA 2 cut(s) 179, 220
MfeI CAATTG 1 cut(s) 427
MhlI GDGCHC 1 cut(s) 272
MlsI TGGCCA 1 cut(s) 237
MluCI AATT 6 cut(s) 185, 304, 427, 681, 698, 860
MluNI TGGCCA 1 cut(s) 237
MlyI GAGTC 2 cut(s) 455, 752
MnlI CCTC 7 cut(s) 29, 389, 545, 548, 597, 802, 805
Mox20I TGGCCA 1 cut(s) 237
Mph1103I ATGCAT 1 cut(s) 648
MroI TCCGGA 1 cut(s) 256
MscI TGGCCA 1 cut(s) 237
MseI TTAA 1 cut(s) 638
Msp20I TGGCCA 1 cut(s) 237
MspI CCGG 2 cut(s) 6, 257
MspR9I CCNGG 1 cut(s) 576
MunI CAATTG 1 cut(s) 427
MvaI CCWGG 1 cut(s) 576
MwoI GCNNNNNNNGC 5 cut(s) 77, 243, 413, 788, 812
NdeI CATATG 1 cut(s) 664
NdeII GATC 3 cut(s) 117, 423, 511
NlaIII CATG 4 cut(s) 128, 518, 529, 739
NmuCI GTSAC 2 cut(s) 409, 458
NsiI ATGCAT 1 cut(s) 648
PaeR7I CTCGAG 2 cut(s) 465, 588
PagI TCATGA 1 cut(s) 514
PcsI WCGNNNNNNNCGW 1 cut(s) 359
PfeI GAWTC 5 cut(s) 35, 83, 253, 364, 558
PflMI CCANNNNNTGG 1 cut(s) 439
PinAI ACCGGT 1 cut(s) 5
PkrI GCNGC 2 cut(s) 790, 793
PleI GAGTC 2 cut(s) 455, 752
PpsI GAGTC 2 cut(s) 455, 752
Psp6I CCWGG 1 cut(s) 574
PspGI CCWGG 1 cut(s) 574
PspXI VCTCGAGB 1 cut(s) 588
PstI CTGCAG 2 cut(s) 82, 793
PstNI CAGNNNCTG 1 cut(s) 439
SaqAI TTAA 1 cut(s) 638
SatI GCNGC 2 cut(s) 789, 792
Sau3AI GATC 3 cut(s) 117, 423, 511
SchI GAGTC 2 cut(s) 455, 752
ScrFI CCNGG 1 cut(s) 576
SduI GDGCHC 1 cut(s) 272
SfaNI GCATC 4 cut(s) 74, 633, 682, 769
SfcI CTRYAG 2 cut(s) 78, 789
Sfr274I CTCGAG 2 cut(s) 465, 588
SlaI CTCGAG 2 cut(s) 465, 588
SmlI CTYRAG 2 cut(s) 465, 588
SmoI CTYRAG 2 cut(s) 465, 588
Sse9I AATT 6 cut(s) 185, 304, 427, 681, 698, 860
SspMI CTAG 2 cut(s) 368, 710
StyD4I CCNGG 1 cut(s) 574
TaaI ACNGT 1 cut(s) 673
TaqI TCGA 4 cut(s) 231, 466, 543, 589
TasI AATT 6 cut(s) 185, 304, 427, 681, 698, 860
TfiI GAWTC 5 cut(s) 35, 83, 253, 364, 558
Tru1I TTAA 1 cut(s) 638
Tru9I TTAA 1 cut(s) 638
TseFI GTSAC 2 cut(s) 409, 458
TseI GCWGC 2 cut(s) 788, 791
Tsp45I GTSAC 2 cut(s) 409, 458
TspDTI ATGAA 4 cut(s) 44, 63, 122, 552
TspGWI ACGGA 2 cut(s) 28, 368
Van91I CCANNNNNTGG 1 cut(s) 439
XagI CCTNNNNNAGG 1 cut(s) 806
XapI RAATTY 4 cut(s) 185, 304, 698, 860
XbaI TCTAGA 1 cut(s) 367
XhoI CTCGAG 2 cut(s) 465, 588
XspI CTAG 2 cut(s) 368, 710
Zsp2I ATGCAT 1 cut(s) 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.