Rroxscaffold_1G00047190

protein phosphatase 2C 39

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0011687
Physical Location & Seq
Reverse (-)
66711308 .. 66715512
4205 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00047190.1

Sequence Viewer

Length: 765 bp
ATGTCACATAATATATCACATGGTTACCACTTGGTAAAGGGAAAATCCCATCATGCTATGGAAGACTATGTTGTTGCACAGTTTAAGCAAATTGAAGACCATGAGCTAGGACTATTTGCAATCTTTGATGGGCATTTGAGTCATGAAATTCCTGAATACTTGCAGTCTAATCTCTTCAATAATATCTTAAAAGAGCCCGAATTCTGGAAAGAAACTGAGGATGCAGTCAGGAAAGCATATCGAATAACTGATACTAACATTCTGGAGAAAGCAGTCGATTTGGGCAAAGGGGGCTCAACTGCTGTTACTGCCATATTAATTGACTGTCGCAAGCTTGTGGTAGCCAATGTTGGGGATTCTCGTGCTATTATCTGCAAGAATGGTGTGGCTAAGCAGCTATCTGTTGATCATGAACCGAGCACAGAGAGAGAGCAAATCGAGAACAGAGGTGGTTTTGTATCAAACTTTCCAGGGGATGTACCACGTGTTGATGGGCAGTTGGCTGTAGCACGGGCATTCGGTGACAAGAGCTTGAAGAAACATTTAAGTTCTGAGCCTTTTGTGATGTCAGAGACGATAGATGATGAAACAGAGTTTGCTGTCTTAGCAAGTGATGGACTGTGGAAGGTGATGACAAACCAAGAAGTTGTGGATGCCATAAAAAATATAAAGGATGCTCGGGCAGCAGCAAAGCATCTTACTGAAGAGGCAGTCAATAGGAAGAGCTCAGACGACATTTCCTGTGTAGTTGTAAGATTTCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

254

Amino Acids

28.29

Weight (kDa)

5.67

Isoelectric Point (pI)

42.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 17 - 246 4e-55 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011687)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15260 AT3G15260
fragaria_vesca FvH4_3g19640 FvH4_3g19640
malus_domestica MD03G1230700.v1.1 MD11G1251900.v1.1
prunus_persica Prupe.4G177100_v2.0.a1
pyrus_communis pycom03g17840 pycom11g22340
rosa_chinensis RchiOBHm_Chr5g0032841
rosa_laevigata RLG00000033433
rosa_multiflora Rmu_sc0000986.1_g000035
rosa_roxburghii Rroxscaffold_1G00047190
rosa_rugosa Rorug05G0134100
rosa_samantha Rh5AG227000 Rh5BG228300 Rh5CG256100 Rh5DG233100
rosa_wichuraiana Rw5G020810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 147, 200
AcuI CTGAAG 1 cut(s) 723
AcvI CACGTG 1 cut(s) 485
AfaI GTAC 1 cut(s) 480
AfiI CCNNNNNNNGG 2 cut(s) 204, 351
AflIII ACRYGT 1 cut(s) 484
AgsI TTSAA 3 cut(s) 95, 178, 535
AjnI CCWGG 1 cut(s) 469
AluBI AGCT 5 cut(s) 106, 334, 397, 531, 726
AluI AGCT 5 cut(s) 106, 334, 397, 531, 726
Alw21I GWGCWC 2 cut(s) 422, 728
Alw26I GTCTC 1 cut(s) 566
Ama87I CYCGRG 1 cut(s) 678
ApeKI GCWGC 3 cut(s) 394, 683, 686
ApoI RAATTY 2 cut(s) 147, 200
AseI ATTAAT 1 cut(s) 317
AsuHPI GGTGA 2 cut(s) 533, 640
AvaI CYCGRG 1 cut(s) 678
BanII GRGCYC 3 cut(s) 198, 296, 728
BauI CACGAG 1 cut(s) 360
BbrPI CACGTG 1 cut(s) 485
BbsI GAAGAC 2 cut(s) 69, 102
Bbv12I GWGCWC 2 cut(s) 422, 728
BbvI GCAGC 3 cut(s) 406, 695, 698
BccI CCATC 4 cut(s) 57, 122, 485, 608
BciT130I CCWGG 1 cut(s) 471
BclI TGATCA 1 cut(s) 406
BcoDI GTCTC 1 cut(s) 566
BfaI CTAG 1 cut(s) 107
BfmI CTRYAG 1 cut(s) 504
BisI GCNGC 3 cut(s) 395, 684, 687
BlpI GCTNAGC 1 cut(s) 390
BlsI GCNGC 3 cut(s) 396, 685, 688
Bme1390I CCNGG 1 cut(s) 471
BmeT110I CYCGRG 1 cut(s) 678
BmrFI CCNGG 1 cut(s) 471
BmsI GCATC 4 cut(s) 211, 643, 664, 703
BpiI GAAGAC 2 cut(s) 69, 102
BpmI CTGGAG 1 cut(s) 284
Bpu1102I GCTNAGC 1 cut(s) 390
BsaAI YACGTR 1 cut(s) 485
BsaJI CCNNGG 1 cut(s) 470
Bsc4I CCNNNNNNNGG 2 cut(s) 204, 351
BseBI CCWGG 1 cut(s) 471
BseDI CCNNGG 1 cut(s) 470
BseGI GGATG 4 cut(s) 226, 481, 658, 679
BseLI CCNNNNNNNGG 2 cut(s) 204, 351
BseMII CTCAG 3 cut(s) 207, 543, 741
BseXI GCAGC 3 cut(s) 406, 695, 698
BsiHKAI GWGCWC 2 cut(s) 422, 728
BsiHKCI CYCGRG 1 cut(s) 678
BslI CCNNNNNNNGG 2 cut(s) 204, 351
BsmAI GTCTC 1 cut(s) 566
BsmBI CGTCTC 1 cut(s) 566
BsmI GAATGC 1 cut(s) 515
BsoBI CYCGRG 1 cut(s) 678
Bsp1286I GDGCHC 4 cut(s) 198, 296, 422, 728
Bsp143I GATC 1 cut(s) 406
Bsp1720I GCTNAGC 1 cut(s) 390
BspCNI CTCAG 3 cut(s) 208, 544, 740
BspHI TCATGA 2 cut(s) 142, 409
BspQI GCTCTTC 1 cut(s) 716
BssECI CCNNGG 1 cut(s) 470
BssMI GATC 1 cut(s) 406
BssSI CACGAG 1 cut(s) 360
Bst2BI CACGAG 1 cut(s) 360
Bst2UI CCWGG 1 cut(s) 471
Bst4CI ACNGT 3 cut(s) 81, 326, 621
Bst6I CTCTTC 3 cut(s) 179, 699, 716
BstBAI YACGTR 1 cut(s) 485
BstC8I GCNNGC 1 cut(s) 332
BstDEI CTNAG 5 cut(s) 216, 390, 552, 604, 727
BstEII GGTNACC 1 cut(s) 23
BstF5I GGATG 4 cut(s) 226, 481, 658, 679
BstKTI GATC 1 cut(s) 409
BstMAI GTCTC 1 cut(s) 566
BstMBI GATC 1 cut(s) 406
BstMWI GCNNNNNNNGC 4 cut(s) 291, 308, 605, 683
BstNI CCWGG 1 cut(s) 471
BstPI GGTNACC 1 cut(s) 23
BstSCI CCNGG 1 cut(s) 469
BstSFI CTRYAG 1 cut(s) 504
BstV1I GCAGC 3 cut(s) 406, 695, 698
BstV2I GAAGAC 2 cut(s) 69, 102
BtsCI GGATG 4 cut(s) 226, 481, 658, 679
Cac8I GCNNGC 1 cut(s) 332
CciI TCATGA 2 cut(s) 142, 409
Csp6I GTAC 1 cut(s) 479
CviAII CATG 5 cut(s) 20, 53, 101, 143, 410
CviQI GTAC 1 cut(s) 479
DdeI CTNAG 5 cut(s) 216, 390, 552, 604, 727
DpnI GATC 1 cut(s) 408
DpnII GATC 1 cut(s) 406
Eam1104I CTCTTC 3 cut(s) 179, 699, 716
EarI CTCTTC 3 cut(s) 179, 699, 716
Ecl136II GAGCTC 1 cut(s) 726
Eco24I GRGCYC 3 cut(s) 198, 296, 728
Eco53kI GAGCTC 1 cut(s) 726
Eco57I CTGAAG 1 cut(s) 723
Eco72I CACGTG 1 cut(s) 485
Eco88I CYCGRG 1 cut(s) 678
Eco91I GGTNACC 1 cut(s) 23
EcoICRI GAGCTC 1 cut(s) 726
EcoO65I GGTNACC 1 cut(s) 23
EcoRI GAATTC 1 cut(s) 200
EcoRII CCWGG 1 cut(s) 469
EcoT38I GRGCYC 3 cut(s) 198, 296, 728
Esp3I CGTCTC 1 cut(s) 566
FaeI CATG 5 cut(s) 23, 56, 104, 146, 413
FatI CATG 5 cut(s) 19, 52, 100, 142, 409
FbaI TGATCA 1 cut(s) 406
Fnu4HI GCNGC 3 cut(s) 395, 684, 687
FokI GGATG 4 cut(s) 233, 488, 665, 686
FriOI GRGCYC 3 cut(s) 198, 296, 728
Fsp4HI GCNGC 3 cut(s) 395, 684, 687
FspBI CTAG 1 cut(s) 107
GluI GCNGC 3 cut(s) 395, 684, 687
GsuI CTGGAG 1 cut(s) 284
Hin1II CATG 5 cut(s) 23, 56, 104, 146, 413
HindIII AAGCTT 1 cut(s) 332
HinfI GANTC 2 cut(s) 139, 356
HphI GGTGA 2 cut(s) 533, 640
Hpy188I TCNGA 3 cut(s) 553, 571, 730
Hpy188III TCNNGA 7 cut(s) 143, 152, 205, 229, 263, 410, 439
HpyAV CCTTC 1 cut(s) 619
HpyCH4III ACNGT 3 cut(s) 81, 326, 621
HpyCH4IV ACGT 1 cut(s) 484
HpyCH4V TGCA 5 cut(s) 77, 119, 163, 224, 375
HpyF10VI GCNNNNNNNGC 4 cut(s) 291, 308, 605, 683
HpyF3I CTNAG 5 cut(s) 216, 390, 552, 604, 727
HpySE526I ACGT 1 cut(s) 484
Hsp92II CATG 5 cut(s) 23, 56, 104, 146, 413
Ksp22I TGATCA 1 cut(s) 406
Kzo9I GATC 1 cut(s) 406
LguI GCTCTTC 1 cut(s) 716
LpnPI CCDG 7 cut(s) 165, 190, 214, 248, 456, 483, 754
Lsp1109I GCAGC 3 cut(s) 406, 695, 698
LweI GCATC 4 cut(s) 211, 643, 664, 703
MaeI CTAG 1 cut(s) 107
MaeII ACGT 1 cut(s) 484
MaeIII GTNAC 4 cut(s) 3, 23, 304, 521
MalI GATC 1 cut(s) 408
MboI GATC 1 cut(s) 406
MboII GAAGA 6 cut(s) 74, 107, 166, 547, 716, 733
MhlI GDGCHC 4 cut(s) 198, 296, 422, 728
MluCI AATT 4 cut(s) 90, 147, 200, 318
MlyI GAGTC 1 cut(s) 148
MnlI CCTC 3 cut(s) 211, 440, 700
MseI TTAA 4 cut(s) 84, 188, 317, 545
MspR9I CCNGG 1 cut(s) 471
Mva1269I GAATGC 1 cut(s) 515
MvaI CCWGG 1 cut(s) 471
MwoI GCNNNNNNNGC 4 cut(s) 291, 308, 605, 683
NdeII GATC 1 cut(s) 406
NlaIII CATG 5 cut(s) 23, 56, 104, 146, 413
NmuCI GTSAC 2 cut(s) 3, 521
PagI TCATGA 2 cut(s) 142, 409
PciSI GCTCTTC 1 cut(s) 716
PctI GAATGC 1 cut(s) 515
PfeI GAWTC 1 cut(s) 356
PkrI GCNGC 3 cut(s) 396, 685, 688
PleI GAGTC 1 cut(s) 147
PmaCI CACGTG 1 cut(s) 485
PmlI CACGTG 1 cut(s) 485
PpsI GAGTC 1 cut(s) 147
Ppu21I YACGTR 1 cut(s) 485
PshBI ATTAAT 1 cut(s) 317
Psp124BI GAGCTC 1 cut(s) 728
Psp6I CCWGG 1 cut(s) 469
PspCI CACGTG 1 cut(s) 485
PspEI GGTNACC 1 cut(s) 23
PspGI CCWGG 1 cut(s) 469
RsaI GTAC 1 cut(s) 480
RsaNI GTAC 1 cut(s) 479
SacI GAGCTC 1 cut(s) 728
SapI GCTCTTC 1 cut(s) 716
SaqAI TTAA 4 cut(s) 84, 188, 317, 545
SatI GCNGC 3 cut(s) 395, 684, 687
Sau3AI GATC 1 cut(s) 406
SchI GAGTC 1 cut(s) 148
ScrFI CCNGG 1 cut(s) 471
SduI GDGCHC 4 cut(s) 198, 296, 422, 728
SetI ASST 8 cut(s) 108, 336, 399, 451, 487, 533, 630, 728
SfaNI GCATC 4 cut(s) 211, 643, 664, 703
SfcI CTRYAG 1 cut(s) 504
Sse9I AATT 4 cut(s) 90, 147, 200, 318
SspMI CTAG 1 cut(s) 107
SstI GAGCTC 1 cut(s) 728
StyD4I CCNGG 1 cut(s) 469
TaaI ACNGT 3 cut(s) 81, 326, 621
TaiI ACGT 1 cut(s) 487
TaqI TCGA 3 cut(s) 241, 276, 438
TasI AATT 4 cut(s) 90, 147, 200, 318
TfiI GAWTC 1 cut(s) 356
Tru1I TTAA 4 cut(s) 84, 188, 317, 545
Tru9I TTAA 4 cut(s) 84, 188, 317, 545
TseFI GTSAC 2 cut(s) 3, 521
TseI GCWGC 3 cut(s) 394, 683, 686
Tsp45I GTSAC 2 cut(s) 3, 521
TspDTI ATGAA 3 cut(s) 159, 426, 600
VspI ATTAAT 1 cut(s) 317
XapI RAATTY 2 cut(s) 147, 200
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.