MD11G1251900.v1.1

protein phosphatase 2C 39

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0011687
Physical Location & Seq
Reverse (-)
36427094 .. 36429642
2549 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1251900.v1.1.491

Sequence Viewer

Length: 849 bp
ATGACCGGCAGAGAAATCCTCCTTAAGATGAAGGAGAAAGTTTTAGGTTCATCAGACCCTGACTCTGGAAAGGGAAAGAGCAAGATGTCGCATCATATAACACATGGATTCCATTTGGTAAAGGGAAAAGCGCATCATCCTATGGAAGACTATGTTGTTGCGCAATTTAAGAACATCGATGACCACGAGCTTGGACTATTTGCAATATTTGATGGCCATTTGAGCCATGAAATTCCTGAGTACTTGCAGTCTAATCTCTTTAAGAATATCTTGAAAGAGCCTGATTTCTGGACAGAACCCAAGAAGGCAGTCGAAAGAGCCTATCGTGTAACAGATGCTAACATTCTGGAGAAGGCAGTTGATTTGGGCAAGGGGGGTTCAACAGCGGTGACGGCCATTTTAATTGACTGCCAGAAGCTGGTGGTAGCCAATGTTGGGGATTCTCGAGCTATTGTCTGCAAGAATGGTGTAGCTAAACAATTATCTGTTGATCACGAGCCTAGCACAGAAAGAGAAGATATCGAGAACAGAGGTGGTTTCGTGTCAAACTTTCCAGGGGACGTCCCACGGGTTGATGGGCAGTTGGCGGTAGCAAGAGCATTTGGTGACAAGAGCTTGAAGAAACATCTCAGTTCTGAACCTTATGTGATGGTGGATTTAATAGATGATACCACCGAGTTCGTTGTCTTGGCAAGCGACGGACTATGGAAGGTGATGACGAACCAAGAAGTTGTGGATTCTATCATACAAATAAAGGATGCGCGGGCAGCAGCAAAGCACCTTACTGAAGAGGCCGTCAAGAGGAGGAGCTCCGATGATATTTCCTGTATAGTCGTAAGATTTCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

283

Amino Acids

31.27

Weight (kDa)

6.18

Isoelectric Point (pI)

37.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 43 - 274 1.2e-52 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011687)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15260 AT3G15260
fragaria_vesca FvH4_3g19640 FvH4_3g19640
malus_domestica MD03G1230700.v1.1 MD11G1251900.v1.1
prunus_persica Prupe.4G177100_v2.0.a1
pyrus_communis pycom03g17840 pycom11g22340
rosa_chinensis RchiOBHm_Chr5g0032841
rosa_laevigata RLG00000033433
rosa_multiflora Rmu_sc0000986.1_g000035
rosa_roxburghii Rroxscaffold_1G00047190
rosa_rugosa Rorug05G0134100
rosa_samantha Rh5AG227000 Rh5BG228300 Rh5CG256100 Rh5DG233100
rosa_wichuraiana Rw5G020810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 564
Acc16I TGCGCA 1 cut(s) 162
AccB7I CCANNNNNTGG 1 cut(s) 418
AccII CGCG 1 cut(s) 763
AciI CCGC 3 cut(s) 386, 587, 763
AcoI YGGCCR 2 cut(s) 214, 393
AcsI RAATTY 1 cut(s) 231
AcuI CTGAAG 1 cut(s) 807
AcyI GRCGYC 1 cut(s) 561
AfaI GTAC 1 cut(s) 242
AfiI CCNNNNNNNGG 4 cut(s) 65, 418, 435, 801
AflII CTTAAG 1 cut(s) 23
AgsI TTSAA 3 cut(s) 274, 381, 619
AjnI CCWGG 1 cut(s) 553
AluBI AGCT 6 cut(s) 190, 418, 449, 473, 615, 810
AluI AGCT 6 cut(s) 190, 418, 449, 473, 615, 810
Alw21I GWGCWC 1 cut(s) 812
AlwNI CAGNNNCTG 2 cut(s) 59, 418
Ama87I CYCGRG 1 cut(s) 444
AoxI GGCC 3 cut(s) 214, 393, 792
ApeKI GCWGC 2 cut(s) 767, 770
ApoI RAATTY 1 cut(s) 231
AspLEI GCGC 3 cut(s) 133, 163, 763
AsuHPI GGTGA 3 cut(s) 400, 617, 724
AvaI CYCGRG 1 cut(s) 444
BalI TGGCCA 1 cut(s) 216
BanII GRGCYC 1 cut(s) 812
BauI CACGAG 2 cut(s) 185, 494
BbsI GAAGAC 1 cut(s) 153
Bbv12I GWGCWC 1 cut(s) 812
BbvI GCAGC 2 cut(s) 779, 782
BccI CCATC 3 cut(s) 206, 569, 643
BceAI ACGGC 2 cut(s) 408, 779
BciT130I CCWGG 1 cut(s) 555
BclI TGATCA 1 cut(s) 490
BfaI CTAG 1 cut(s) 501
BfrI CTTAAG 1 cut(s) 23
BisI GCNGC 2 cut(s) 768, 771
BlsI GCNGC 2 cut(s) 769, 772
BmcAI AGTACT 1 cut(s) 242
Bme1390I CCNGG 1 cut(s) 555
BmeT110I CYCGRG 1 cut(s) 444
BmrFI CCNGG 1 cut(s) 555
BmsI GCATC 4 cut(s) 100, 142, 325, 748
BpiI GAAGAC 1 cut(s) 153
BplI GAGNNNNNCTC 1 cut(s) 35
BpmI CTGGAG 1 cut(s) 368
Bsa29I ATCGAT 1 cut(s) 177
BsaHI GRCGYC 1 cut(s) 561
BsaJI CCNNGG 2 cut(s) 554, 566
Bsc4I CCNNNNNNNGG 4 cut(s) 65, 418, 435, 801
Bse118I RCCGGY 1 cut(s) 5
BseBI CCWGG 1 cut(s) 555
BseCI ATCGAT 1 cut(s) 177
BseDI CCNNGG 2 cut(s) 554, 566
BseGI GGATG 2 cut(s) 136, 763
BseLI CCNNNNNNNGG 4 cut(s) 65, 418, 435, 801
BseMII CTCAG 2 cut(s) 228, 643
BseRI GAGGAG 2 cut(s) 817, 820
BseXI GCAGC 2 cut(s) 779, 782
Bsh1236I CGCG 1 cut(s) 763
BshFI GGCC 3 cut(s) 216, 395, 794
BshVI ATCGAT 1 cut(s) 177
BsiHKAI GWGCWC 1 cut(s) 812
BsiHKCI CYCGRG 1 cut(s) 444
BsiSI CCGG 1 cut(s) 6
BslFI GGGAC 2 cut(s) 548, 572
BslI CCNNNNNNNGG 4 cut(s) 65, 418, 435, 801
BsmFI GGGAC 2 cut(s) 548, 572
BsnI GGCC 3 cut(s) 216, 395, 794
BsoBI CYCGRG 1 cut(s) 444
Bsp1286I GDGCHC 1 cut(s) 812
Bsp143I GATC 1 cut(s) 490
BspACI CCGC 3 cut(s) 386, 587, 763
BspANI GGCC 3 cut(s) 216, 395, 794
BspCNI CTCAG 2 cut(s) 229, 642
BspDI ATCGAT 1 cut(s) 177
BspFNI CGCG 1 cut(s) 763
BspTI CTTAAG 1 cut(s) 23
BsrFI RCCGGY 1 cut(s) 5
BssAI RCCGGY 1 cut(s) 5
BssECI CCNNGG 2 cut(s) 554, 566
BssMI GATC 1 cut(s) 490
BssNI GRCGYC 1 cut(s) 561
BssSI CACGAG 2 cut(s) 185, 494
Bst2BI CACGAG 2 cut(s) 185, 494
Bst2UI CCWGG 1 cut(s) 555
Bst6I CTCTTC 1 cut(s) 783
BstACI GRCGYC 1 cut(s) 561
BstAFI CTTAAG 1 cut(s) 23
BstC8I GCNNGC 2 cut(s) 694, 765
BstDEI CTNAG 2 cut(s) 237, 629
BstDSI CCRYGG 1 cut(s) 566
BstF5I GGATG 2 cut(s) 136, 763
BstFNI CGCG 1 cut(s) 763
BstHHI GCGC 3 cut(s) 133, 163, 763
BstKTI GATC 1 cut(s) 493
BstMBI GATC 1 cut(s) 490
BstMWI GCNNNNNNNGC 3 cut(s) 222, 392, 767
BstNI CCWGG 1 cut(s) 555
BstSCI CCNGG 1 cut(s) 553
BstUI CGCG 1 cut(s) 763
BstV1I GCAGC 2 cut(s) 779, 782
BstV2I GAAGAC 1 cut(s) 153
BstXI CCANNNNNNTGG 1 cut(s) 191
Bsu15I ATCGAT 1 cut(s) 177
BsuRI GGCC 3 cut(s) 216, 395, 794
BsuTUI ATCGAT 1 cut(s) 177
BtgI CCRYGG 1 cut(s) 566
BtsCI GGATG 2 cut(s) 136, 763
Cac8I GCNNGC 2 cut(s) 694, 765
CaiI CAGNNNCTG 2 cut(s) 59, 418
CfoI GCGC 3 cut(s) 133, 163, 763
Cfr10I RCCGGY 1 cut(s) 5
ClaI ATCGAT 1 cut(s) 177
Csp6I GTAC 1 cut(s) 241
CviAII CATG 2 cut(s) 104, 227
CviQI GTAC 1 cut(s) 241
DdeI CTNAG 2 cut(s) 237, 629
DpnI GATC 1 cut(s) 492
DpnII GATC 1 cut(s) 490
EaeI YGGCCR 2 cut(s) 214, 393
Eam1104I CTCTTC 1 cut(s) 783
EarI CTCTTC 1 cut(s) 783
Ecl136II GAGCTC 1 cut(s) 810
Eco24I GRGCYC 1 cut(s) 812
Eco32I GATATC 1 cut(s) 520
Eco53kI GAGCTC 1 cut(s) 810
Eco57I CTGAAG 1 cut(s) 807
Eco88I CYCGRG 1 cut(s) 444
EcoICRI GAGCTC 1 cut(s) 810
EcoRII CCWGG 1 cut(s) 553
EcoRV GATATC 1 cut(s) 520
EcoT38I GRGCYC 1 cut(s) 812
FaeI CATG 2 cut(s) 107, 230
FalI AAGNNNNNCTT 2 cut(s) 254, 286
FaqI GGGAC 2 cut(s) 548, 572
FatI CATG 2 cut(s) 103, 226
FauI CCCGC 1 cut(s) 756
FbaI TGATCA 1 cut(s) 490
Fnu4HI GCNGC 2 cut(s) 768, 771
FokI GGATG 2 cut(s) 123, 770
FriOI GRGCYC 1 cut(s) 812
Fsp4HI GCNGC 2 cut(s) 768, 771
FspBI CTAG 1 cut(s) 501
FspI TGCGCA 1 cut(s) 162
GlaI GCGC 3 cut(s) 132, 162, 762
GluI GCNGC 2 cut(s) 768, 771
GsuI CTGGAG 1 cut(s) 368
HaeIII GGCC 3 cut(s) 216, 395, 794
HapII CCGG 1 cut(s) 6
HhaI GCGC 3 cut(s) 133, 163, 763
Hin1I GRCGYC 1 cut(s) 561
Hin1II CATG 2 cut(s) 107, 230
Hin6I GCGC 3 cut(s) 131, 161, 761
HinP1I GCGC 3 cut(s) 131, 161, 761
HinfI GANTC 4 cut(s) 62, 108, 440, 737
HpaII CCGG 1 cut(s) 6
HphI GGTGA 3 cut(s) 400, 617, 724
Hpy188I TCNGA 3 cut(s) 55, 637, 814
Hpy188III TCNNGA 9 cut(s) 66, 236, 271, 289, 347, 444, 494, 523, 799
Hpy99I CGWCG 1 cut(s) 701
HpyAV CCTTC 4 cut(s) 25, 298, 346, 703
HpyCH4IV ACGT 1 cut(s) 561
HpyCH4V TGCA 3 cut(s) 203, 247, 459
HpyF10VI GCNNNNNNNGC 3 cut(s) 222, 392, 767
HpyF3I CTNAG 2 cut(s) 237, 629
HpySE526I ACGT 1 cut(s) 561
Hsp92I GRCGYC 1 cut(s) 561
Hsp92II CATG 2 cut(s) 107, 230
HspAI GCGC 3 cut(s) 131, 161, 761
Ksp22I TGATCA 1 cut(s) 490
Kzo9I GATC 1 cut(s) 490
LmnI GCTCC 2 cut(s) 807, 815
Lsp1109I GCAGC 2 cut(s) 779, 782
LweI GCATC 4 cut(s) 100, 142, 325, 748
MaeI CTAG 1 cut(s) 501
MaeII ACGT 1 cut(s) 561
MaeIII GTNAC 3 cut(s) 328, 388, 605
MalI GATC 1 cut(s) 492
MboI GATC 1 cut(s) 490
MboII GAAGA 4 cut(s) 158, 527, 631, 800
MhlI GDGCHC 1 cut(s) 812
MlsI TGGCCA 1 cut(s) 216
MluCI AATT 4 cut(s) 164, 231, 402, 479
MluNI TGGCCA 1 cut(s) 216
MlyI GAGTC 1 cut(s) 56
MnlI CCTC 5 cut(s) 29, 524, 784, 795, 798
Mox20I TGGCCA 1 cut(s) 216
MscI TGGCCA 1 cut(s) 216
MseI TTAA 5 cut(s) 24, 168, 261, 401, 659
Msp20I TGGCCA 1 cut(s) 216
MspA1I CMGCKG 1 cut(s) 386
MspCI CTTAAG 1 cut(s) 23
MspI CCGG 1 cut(s) 6
MspR9I CCNGG 1 cut(s) 555
MvaI CCWGG 1 cut(s) 555
MvnI CGCG 1 cut(s) 763
MwoI GCNNNNNNNGC 3 cut(s) 222, 392, 767
NdeII GATC 1 cut(s) 490
NlaIII CATG 2 cut(s) 107, 230
NmuCI GTSAC 2 cut(s) 388, 605
NsbI TGCGCA 1 cut(s) 162
PaeR7I CTCGAG 1 cut(s) 444
PcsI WCGNNNNNNNCGW 1 cut(s) 183
PfeI GAWTC 3 cut(s) 108, 440, 737
PflMI CCANNNNNTGG 1 cut(s) 418
PkrI GCNGC 2 cut(s) 769, 772
PleI GAGTC 1 cut(s) 56
PpsI GAGTC 1 cut(s) 56
Psp124BI GAGCTC 1 cut(s) 812
Psp6I CCWGG 1 cut(s) 553
PspGI CCWGG 1 cut(s) 553
PstNI CAGNNNCTG 2 cut(s) 59, 418
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
SacI GAGCTC 1 cut(s) 812
SaqAI TTAA 5 cut(s) 24, 168, 261, 401, 659
SatI GCNGC 2 cut(s) 768, 771
Sau3AI GATC 1 cut(s) 490
ScaI AGTACT 1 cut(s) 242
SchI GAGTC 1 cut(s) 56
ScrFI CCNGG 1 cut(s) 555
SduI GDGCHC 1 cut(s) 812
SfaNI GCATC 4 cut(s) 100, 142, 325, 748
Sfr274I CTCGAG 1 cut(s) 444
SlaI CTCGAG 1 cut(s) 444
SmlI CTYRAG 2 cut(s) 23, 444
SmoI CTYRAG 2 cut(s) 23, 444
Sse9I AATT 4 cut(s) 164, 231, 402, 479
SsiI CCGC 3 cut(s) 386, 587, 763
SspI AATATT 1 cut(s) 207
SspMI CTAG 1 cut(s) 501
SstI GAGCTC 1 cut(s) 812
StyD4I CCNGG 1 cut(s) 553
TaiI ACGT 1 cut(s) 564
TaqI TCGA 4 cut(s) 177, 312, 445, 522
TasI AATT 4 cut(s) 164, 231, 402, 479
TatI WGTACW 1 cut(s) 240
TfiI GAWTC 3 cut(s) 108, 440, 737
Tru1I TTAA 5 cut(s) 24, 168, 261, 401, 659
Tru9I TTAA 5 cut(s) 24, 168, 261, 401, 659
TseFI GTSAC 2 cut(s) 388, 605
TseI GCWGC 2 cut(s) 767, 770
Tsp45I GTSAC 2 cut(s) 388, 605
TspDTI ATGAA 3 cut(s) 39, 44, 243
TspGWI ACGGA 1 cut(s) 714
Van91I CCANNNNNTGG 1 cut(s) 418
Vha464I CTTAAG 1 cut(s) 23
XapI RAATTY 1 cut(s) 231
XhoI CTCGAG 1 cut(s) 444
XspI CTAG 1 cut(s) 501
ZraI GACGTC 1 cut(s) 562
ZrmI AGTACT 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.