Rmu_sc0000986.1_g000035

protein phosphatase 2C 39

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000986.1
OG0011687
Physical Location & Seq
Reverse (-)
188637 .. 192564
3928 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000986.1_g000035.1.cds

Sequence Viewer

Length: 1212 bp
atgacaggcaaggaaatcctcaacaagatgaaggaaaaagttttaggtccatcggaccctgactctggcaaaggtaagagcaagatgtcacataatatatcacatggttaccacttggtaaagggaaaatcccatcatgctatggaagactatgttgttgcacagtttaagcaaattgaagaccatgagctaggactatttgcaatctttgatgggcatttgagtcatgaaattcctgaatacttgcagtctaatctcttcaataatatcttaaaagagcccgaattctggaaagaaactgaggatgcagtcaggaaagcatatcgaataactgatactaacattctggagaaagcagtcgatttgggcaaagggggctcaactgctgttactgccatattaattgactgtcgcaagcttgtggtggccaatgttggggattctcgtgctattatctgcaagaatggtgtggctaagcagctatctgttgatcatgaaccgagcacagagagagagcaaatcgagaacagaggtggttttgtatcaaactttccaggggatgtaccacgtgttgatgggcagttggctgtagcacgggcattcggtgacaagagcttgaagaaacatttaagttctgaaccttttgtgatgtcggagacgatagatgatgaaacagagtttgctgtcttagcaagtgatggactgtggaaggtgatgacaaaccaagaagttgtggatgccataaaaaatattaaggatgctcgggcagcagcaaagcatcttactgaagaggcagtcaatagaaagagctcggacgacatttcctgtgtagttaccggcgaccgacttccgctatgtacaggagctgcacaattgcttaatagaacttttgaccggcgaccgacttccgctatgtacaggagctgcacaatcccgagtttgtacttggcctaccactatcagaatcgccgtaatgagaagtggagaaggtccgttggagagaccctgatcgagttacttggaggggggctgggggcattccagagagaggagagagaatctgctggagacatgcgttttgtcggcgttgacgactttgaaggtggcaagagggaagtgggaggcaaggttgagggaaggaggcgtcgtcgtcttcaggcgtggacgccatcactgcgccggaggtggagatcgaagatcgaaggtctatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

403

Amino Acids

45.15

Weight (kDa)

8.43

Isoelectric Point (pI)

59.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011687)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15260 AT3G15260
fragaria_vesca FvH4_3g19640 FvH4_3g19640
malus_domestica MD03G1230700.v1.1 MD11G1251900.v1.1
prunus_persica Prupe.4G177100_v2.0.a1
pyrus_communis pycom03g17840 pycom11g22340
rosa_chinensis RchiOBHm_Chr5g0032841
rosa_laevigata RLG00000033433
rosa_multiflora Rmu_sc0000986.1_g000035
rosa_roxburghii Rroxscaffold_1G00047190
rosa_rugosa Rorug05G0134100
rosa_samantha Rh5AG227000 Rh5BG228300 Rh5CG256100 Rh5DG233100
rosa_wichuraiana Rw5G020810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 851, 909
AcoI YGGCCR 1 cut(s) 426
AcsI RAATTY 2 cut(s) 231, 284
AcuI CTGAAG 2 cut(s) 807, 1139
AcvI CACGTG 1 cut(s) 569
AcyI GRCGYC 2 cut(s) 1144, 1166
AfaI GTAC 4 cut(s) 564, 859, 917, 944
AfiI CCNNNNNNNGG 4 cut(s) 65, 288, 435, 1048
AflIII ACRYGT 1 cut(s) 568
AgsI TTSAA 4 cut(s) 179, 262, 619, 1100
AjnI CCWGG 1 cut(s) 553
AluBI AGCT 7 cut(s) 190, 418, 481, 615, 810, 866, 924
AluI AGCT 7 cut(s) 190, 418, 481, 615, 810, 866, 924
Alw21I GWGCWC 2 cut(s) 506, 812
Alw26I GTCTC 3 cut(s) 650, 995, 1062
AlwNI CAGNNNCTG 2 cut(s) 866, 924
Ama87I CYCGRG 2 cut(s) 762, 934
AoxI GGCC 2 cut(s) 426, 948
ApeKI GCWGC 5 cut(s) 478, 767, 770, 866, 924
ApoI RAATTY 2 cut(s) 231, 284
ArsI GACNNNNNNTTYG 2 cut(s) 1061, 1093
AseI ATTAAT 1 cut(s) 401
AspLEI GCGC 1 cut(s) 1179
AspS9I GGNCC 3 cut(s) 47, 55, 990
AsuHPI GGTGA 2 cut(s) 617, 724
AvaI CYCGRG 2 cut(s) 762, 934
AvaII GGWCC 3 cut(s) 47, 55, 990
BalI TGGCCA 1 cut(s) 428
BanII GRGCYC 3 cut(s) 282, 380, 812
BauI CACGAG 1 cut(s) 444
BbrPI CACGTG 1 cut(s) 569
BbsI GAAGAC 3 cut(s) 153, 186, 1145
Bbv12I GWGCWC 2 cut(s) 506, 812
BbvI GCAGC 5 cut(s) 490, 779, 782, 853, 911
BccI CCATC 6 cut(s) 58, 141, 206, 569, 692, 1177
BceAI ACGGC 1 cut(s) 954
BciT130I CCWGG 1 cut(s) 555
BclI TGATCA 1 cut(s) 490
BcoDI GTCTC 3 cut(s) 650, 995, 1062
BfaI CTAG 1 cut(s) 191
BfmI CTRYAG 1 cut(s) 588
BisI GCNGC 5 cut(s) 479, 768, 771, 867, 925
BlpI GCTNAGC 1 cut(s) 474
BlsI GCNGC 5 cut(s) 480, 769, 772, 868, 926
Bme1390I CCNGG 1 cut(s) 555
Bme18I GGWCC 3 cut(s) 47, 55, 990
BmeT110I CYCGRG 2 cut(s) 762, 934
BmgT120I GGNCC 3 cut(s) 47, 55, 990
BmiI GGNNCC 1 cut(s) 57
BmrFI CCNGG 1 cut(s) 555
BmsI GCATC 4 cut(s) 295, 727, 748, 787
BpiI GAAGAC 3 cut(s) 153, 186, 1145
BpmI CTGGAG 2 cut(s) 368, 1086
Bpu1102I GCTNAGC 1 cut(s) 474
BsaAI YACGTR 1 cut(s) 569
BsaHI GRCGYC 2 cut(s) 1144, 1166
BsaI GGTCTC 1 cut(s) 995
BsaJI CCNNGG 1 cut(s) 554
BsaXI ACNNNNNCTCC 4 cut(s) 1113, 1132, 1143, 1162
Bsc4I CCNNNNNNNGG 4 cut(s) 65, 288, 435, 1048
Bse118I RCCGGY 2 cut(s) 836, 894
BseBI CCWGG 1 cut(s) 555
BseDI CCNNGG 1 cut(s) 554
BseGI GGATG 4 cut(s) 310, 565, 742, 763
BseLI CCNNNNNNNGG 4 cut(s) 65, 288, 435, 1048
BseMII CTCAG 1 cut(s) 291
BseRI GAGGAG 1 cut(s) 1064
BseXI GCAGC 5 cut(s) 490, 779, 782, 853, 911
BseYI CCCAGC 1 cut(s) 1030
BsgI GTGCAG 2 cut(s) 852, 910
Bsh1285I CGRYCG 2 cut(s) 844, 902
BshFI GGCC 2 cut(s) 428, 950
BsiEI CGRYCG 2 cut(s) 844, 902
BsiHKAI GWGCWC 2 cut(s) 506, 812
BsiHKCI CYCGRG 2 cut(s) 762, 934
BsiSI CCGG 3 cut(s) 837, 895, 1180
BslI CCNNNNNNNGG 4 cut(s) 65, 288, 435, 1048
BsmAI GTCTC 3 cut(s) 650, 995, 1062
BsmBI CGTCTC 1 cut(s) 650
BsmI GAATGC 2 cut(s) 599, 1037
BsnI GGCC 2 cut(s) 428, 950
Bso31I GGTCTC 1 cut(s) 995
BsoBI CYCGRG 2 cut(s) 762, 934
Bsp1286I GDGCHC 4 cut(s) 282, 380, 506, 812
Bsp1407I TGTACA 2 cut(s) 857, 915
Bsp143I GATC 4 cut(s) 490, 1008, 1190, 1197
Bsp1720I GCTNAGC 1 cut(s) 474
BspACI CCGC 2 cut(s) 851, 909
BspANI GGCC 2 cut(s) 428, 950
BspCNI CTCAG 1 cut(s) 292
BspHI TCATGA 2 cut(s) 226, 493
BspLI GGNNCC 1 cut(s) 57
BspTNI GGTCTC 1 cut(s) 995
BsrFI RCCGGY 2 cut(s) 836, 894
BsrGI TGTACA 2 cut(s) 857, 915
BssAI RCCGGY 2 cut(s) 836, 894
BssECI CCNNGG 1 cut(s) 554
BssMI GATC 4 cut(s) 490, 1008, 1190, 1197
BssNI GRCGYC 2 cut(s) 1144, 1166
BssSI CACGAG 1 cut(s) 444
Bst2BI CACGAG 1 cut(s) 444
Bst2UI CCWGG 1 cut(s) 555
Bst4CI ACNGT 3 cut(s) 165, 410, 705
Bst6I CTCTTC 2 cut(s) 263, 783
BstACI GRCGYC 2 cut(s) 1144, 1166
BstAUI TGTACA 2 cut(s) 857, 915
BstBAI YACGTR 1 cut(s) 569
BstC8I GCNNGC 1 cut(s) 416
BstDEI CTNAG 3 cut(s) 300, 474, 688
BstEII GGTNACC 1 cut(s) 107
BstF5I GGATG 4 cut(s) 310, 565, 742, 763
BstHHI GCGC 1 cut(s) 1179
BstKTI GATC 4 cut(s) 493, 1011, 1193, 1200
BstMAI GTCTC 3 cut(s) 650, 995, 1062
BstMBI GATC 4 cut(s) 490, 1008, 1190, 1197
BstMCI CGRYCG 2 cut(s) 844, 902
BstMWI GCNNNNNNNGC 5 cut(s) 375, 392, 689, 767, 1174
BstNI CCWGG 1 cut(s) 555
BstNSI RCATGY 1 cut(s) 1075
BstPI GGTNACC 1 cut(s) 107
BstSCI CCNGG 1 cut(s) 553
BstSFI CTRYAG 1 cut(s) 588
BstV1I GCAGC 5 cut(s) 490, 779, 782, 853, 911
BstV2I GAAGAC 3 cut(s) 153, 186, 1145
BsuRI GGCC 2 cut(s) 428, 950
BtsCI GGATG 4 cut(s) 310, 565, 742, 763
BtsI GCAGTG 1 cut(s) 1172
BtsIMutI CAGTG 1 cut(s) 1172
Cac8I GCNNGC 1 cut(s) 416
CaiI CAGNNNCTG 2 cut(s) 866, 924
CciI TCATGA 2 cut(s) 226, 493
CfoI GCGC 1 cut(s) 1179
Cfr10I RCCGGY 2 cut(s) 836, 894
Cfr13I GGNCC 3 cut(s) 47, 55, 990
CseI GACGC 2 cut(s) 1133, 1174
Csp6I GTAC 4 cut(s) 563, 858, 916, 943
CviAII CATG 6 cut(s) 104, 137, 185, 227, 494, 1072
CviQI GTAC 4 cut(s) 563, 858, 916, 943
DdeI CTNAG 3 cut(s) 300, 474, 688
DpnI GATC 4 cut(s) 492, 1010, 1192, 1199
DpnII GATC 4 cut(s) 490, 1008, 1190, 1197
EaeI YGGCCR 1 cut(s) 426
Eam1104I CTCTTC 2 cut(s) 263, 783
EarI CTCTTC 2 cut(s) 263, 783
Ecl136II GAGCTC 1 cut(s) 810
Eco24I GRGCYC 3 cut(s) 282, 380, 812
Eco31I GGTCTC 1 cut(s) 995
Eco47I GGWCC 3 cut(s) 47, 55, 990
Eco53kI GAGCTC 1 cut(s) 810
Eco57I CTGAAG 2 cut(s) 807, 1139
Eco72I CACGTG 1 cut(s) 569
Eco88I CYCGRG 2 cut(s) 762, 934
Eco91I GGTNACC 1 cut(s) 107
EcoICRI GAGCTC 1 cut(s) 810
EcoO65I GGTNACC 1 cut(s) 107
EcoRI GAATTC 1 cut(s) 284
EcoRII CCWGG 1 cut(s) 553
EcoT38I GRGCYC 3 cut(s) 282, 380, 812
Esp3I CGTCTC 1 cut(s) 650
FaeI CATG 6 cut(s) 107, 140, 188, 230, 497, 1075
FatI CATG 6 cut(s) 103, 136, 184, 226, 493, 1071
FbaI TGATCA 1 cut(s) 490
Fnu4HI GCNGC 5 cut(s) 479, 768, 771, 867, 925
FokI GGATG 4 cut(s) 317, 572, 749, 770
FriOI GRGCYC 3 cut(s) 282, 380, 812
Fsp4HI GCNGC 5 cut(s) 479, 768, 771, 867, 925
FspBI CTAG 1 cut(s) 191
GlaI GCGC 1 cut(s) 1178
GluI GCNGC 5 cut(s) 479, 768, 771, 867, 925
GsaI CCCAGC 1 cut(s) 1034
GsuI CTGGAG 2 cut(s) 368, 1086
HaeIII GGCC 2 cut(s) 428, 950
HapII CCGG 3 cut(s) 837, 895, 1180
HgaI GACGC 2 cut(s) 1133, 1174
HhaI GCGC 1 cut(s) 1179
Hin1I GRCGYC 2 cut(s) 1144, 1166
Hin1II CATG 6 cut(s) 107, 140, 188, 230, 497, 1075
Hin6I GCGC 1 cut(s) 1177
HinP1I GCGC 1 cut(s) 1177
HincII GTYRAC 1 cut(s) 1090
HindII GTYRAC 1 cut(s) 1090
HindIII AAGCTT 1 cut(s) 416
HinfI GANTC 5 cut(s) 62, 223, 440, 964, 1058
HpaII CCGG 3 cut(s) 837, 895, 1180
HphI GGTGA 2 cut(s) 617, 724
Hpy166II GTNNAC 2 cut(s) 1090, 1164
Hpy188I TCNGA 5 cut(s) 55, 637, 655, 814, 963
Hpy188III TCNNGA 9 cut(s) 227, 236, 289, 313, 347, 494, 523, 934, 1042
Hpy8I GTNNAC 2 cut(s) 1090, 1164
Hpy99I CGWCG 2 cut(s) 1149, 1152
HpyAV CCTTC 6 cut(s) 25, 703, 981, 1094, 1131, 1196
HpyCH4III ACNGT 3 cut(s) 165, 410, 705
HpyCH4IV ACGT 1 cut(s) 568
HpyCH4V TGCA 7 cut(s) 161, 203, 247, 308, 459, 869, 927
HpyF10VI GCNNNNNNNGC 5 cut(s) 375, 392, 689, 767, 1174
HpyF3I CTNAG 3 cut(s) 300, 474, 688
HpySE526I ACGT 1 cut(s) 568
Hsp92I GRCGYC 2 cut(s) 1144, 1166
Hsp92II CATG 6 cut(s) 107, 140, 188, 230, 497, 1075
HspAI GCGC 1 cut(s) 1177
Ksp22I TGATCA 1 cut(s) 490
Kzo9I GATC 4 cut(s) 490, 1008, 1190, 1197
LmnI GCTCC 2 cut(s) 863, 921
Lsp1109I GCAGC 5 cut(s) 490, 779, 782, 853, 911
LweI GCATC 4 cut(s) 295, 727, 748, 787
MaeI CTAG 1 cut(s) 191
MaeII ACGT 1 cut(s) 568
MaeIII GTNAC 6 cut(s) 87, 107, 388, 605, 832, 1014
MalI GATC 4 cut(s) 492, 1010, 1192, 1199
MboI GATC 4 cut(s) 490, 1008, 1190, 1197
MboII GAAGA 7 cut(s) 158, 191, 250, 631, 800, 1145, 1207
MfeI CAATTG 1 cut(s) 872
MhlI GDGCHC 4 cut(s) 282, 380, 506, 812
MlsI TGGCCA 1 cut(s) 428
MluCI AATT 5 cut(s) 174, 231, 284, 402, 872
MluNI TGGCCA 1 cut(s) 428
MlyI GAGTC 2 cut(s) 56, 232
MmeI TCCRAC 2 cut(s) 633, 976
Mox20I TGGCCA 1 cut(s) 428
MscI TGGCCA 1 cut(s) 428
MseI TTAA 6 cut(s) 168, 272, 401, 629, 753, 879
Msp20I TGGCCA 1 cut(s) 428
MspI CCGG 3 cut(s) 837, 895, 1180
MspR9I CCNGG 1 cut(s) 555
MunI CAATTG 1 cut(s) 872
Mva1269I GAATGC 2 cut(s) 599, 1037
MvaI CCWGG 1 cut(s) 555
MwoI GCNNNNNNNGC 5 cut(s) 375, 392, 689, 767, 1174
NdeII GATC 4 cut(s) 490, 1008, 1190, 1197
NlaIII CATG 6 cut(s) 107, 140, 188, 230, 497, 1075
NlaIV GGNNCC 1 cut(s) 57
NmuCI GTSAC 2 cut(s) 87, 605
NspI RCATGY 1 cut(s) 1075
PagI TCATGA 2 cut(s) 226, 493
PcsI WCGNNNNNNNCGW 1 cut(s) 1089
PctI GAATGC 2 cut(s) 599, 1037
PfeI GAWTC 3 cut(s) 440, 964, 1058
PkrI GCNGC 5 cut(s) 480, 769, 772, 868, 926
PleI GAGTC 2 cut(s) 56, 231
PmaCI CACGTG 1 cut(s) 569
PmlI CACGTG 1 cut(s) 569
PpsI GAGTC 2 cut(s) 56, 231
Ppu21I YACGTR 1 cut(s) 569
PshBI ATTAAT 1 cut(s) 401
Psp124BI GAGCTC 1 cut(s) 812
Psp6I CCWGG 1 cut(s) 553
PspCI CACGTG 1 cut(s) 569
PspEI GGTNACC 1 cut(s) 107
PspFI CCCAGC 1 cut(s) 1030
PspGI CCWGG 1 cut(s) 553
PspN4I GGNNCC 1 cut(s) 57
PspPI GGNCC 3 cut(s) 47, 55, 990
PstNI CAGNNNCTG 2 cut(s) 866, 924
RsaI GTAC 4 cut(s) 564, 859, 917, 944
RsaNI GTAC 4 cut(s) 563, 858, 916, 943
SacI GAGCTC 1 cut(s) 812
SaqAI TTAA 6 cut(s) 168, 272, 401, 629, 753, 879
SatI GCNGC 5 cut(s) 479, 768, 771, 867, 925
Sau3AI GATC 4 cut(s) 490, 1008, 1190, 1197
Sau96I GGNCC 3 cut(s) 47, 55, 990
SchI GAGTC 2 cut(s) 56, 232
ScrFI CCNGG 1 cut(s) 555
SduI GDGCHC 4 cut(s) 282, 380, 506, 812
SfaNI GCATC 4 cut(s) 295, 727, 748, 787
SfcI CTRYAG 1 cut(s) 588
SinI GGWCC 3 cut(s) 47, 55, 990
Sse9I AATT 5 cut(s) 174, 231, 284, 402, 872
SsiI CCGC 2 cut(s) 851, 909
SspI AATATT 1 cut(s) 751
SspMI CTAG 1 cut(s) 191
SstI GAGCTC 1 cut(s) 812
StyD4I CCNGG 1 cut(s) 553
TaaI ACNGT 3 cut(s) 165, 410, 705
TaiI ACGT 1 cut(s) 571
TaqI TCGA 6 cut(s) 325, 360, 522, 1011, 1193, 1200
TaqII GACCGA 2 cut(s) 858, 916
TasI AATT 5 cut(s) 174, 231, 284, 402, 872
TatI WGTACW 3 cut(s) 857, 915, 942
TfiI GAWTC 3 cut(s) 440, 964, 1058
Tru1I TTAA 6 cut(s) 168, 272, 401, 629, 753, 879
Tru9I TTAA 6 cut(s) 168, 272, 401, 629, 753, 879
TscAI CASTG 1 cut(s) 1179
TseFI GTSAC 2 cut(s) 87, 605
TseI GCWGC 5 cut(s) 478, 767, 770, 866, 924
Tsp45I GTSAC 2 cut(s) 87, 605
TspDTI ATGAA 4 cut(s) 44, 243, 510, 684
TspGWI ACGGA 1 cut(s) 982
TspRI CASTG 1 cut(s) 1179
VpaK11BI GGWCC 3 cut(s) 47, 55, 990
VspI ATTAAT 1 cut(s) 401
XapI RAATTY 2 cut(s) 231, 284
XceI RCATGY 1 cut(s) 1075
XspI CTAG 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.