Rh5CG256100

protein phosphatase 2C 39

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0011687
Physical Location & Seq
Forward (+)
27140834 .. 27144659
3826 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG256100.1

Sequence Viewer

Length: 636 bp
ATGTCACATAATATATCACATGGTTACCACTTGGTAAAGGGAAAATCCCATCATGCTATGGAAGACTATGTTGTTGCACAGTTTAAGCAAATTGAAGACCATGAGCTAGGACTATTTGCAATCTTTGATGGGCATTTGAGTCATGAAATTCCTGAATACTTGCAGTCTAATCTCTTCAATAATATCTTAAAAGAGCCCGAATTCTGGAAAGAAACTGAGGATGCAGTCAGGAAAGCATATCGAATAACTGATACTAACATTCTGGAGAAAGCAGTCGATTTGGGCAAAGGGGGCTCAACTGCTGTTACTGCCATATTAATTGACTGTCGCAAGCTTGTAGTAGCCAATGTTGGGGATTCTCGTGCTATTATCTGCAAGAATGGTGTGGCTAAGCAGCTATCTGTTGATCATGAACCGAGCACAGAGAGAGAGCAAATCGAGAACAGAGGTGGTTTTGTATCAAACTTTCCAGGGGATGTACCGCGTGTTGATGGGCAGTTGGCTGTAGCACGGGCATTTGGTGACAAGAGCTTGAAGAAACATTTAAGTTCTGAACCTTTTGTGATGTCGGAGACGATAGATGATGAAACAGAGTTTGCTGTCTTAGCAAGTGATGGACTGTGGAAGGTTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

211

Amino Acids

23.43

Weight (kDa)

5.44

Isoelectric Point (pI)

44.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 17 - 210 4.7e-46 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011687)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15260 AT3G15260
fragaria_vesca FvH4_3g19640 FvH4_3g19640
malus_domestica MD03G1230700.v1.1 MD11G1251900.v1.1
prunus_persica Prupe.4G177100_v2.0.a1
pyrus_communis pycom03g17840 pycom11g22340
rosa_chinensis RchiOBHm_Chr5g0032841
rosa_laevigata RLG00000033433
rosa_multiflora Rmu_sc0000986.1_g000035
rosa_roxburghii Rroxscaffold_1G00047190
rosa_rugosa Rorug05G0134100
rosa_samantha Rh5AG227000 Rh5BG228300 Rh5CG256100 Rh5DG233100
rosa_wichuraiana Rw5G020810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 484
AciI CCGC 1 cut(s) 482
AcsI RAATTY 2 cut(s) 147, 200
AfaI GTAC 1 cut(s) 480
AfiI CCNNNNNNNGG 2 cut(s) 204, 351
AgsI TTSAA 3 cut(s) 95, 178, 535
AjnI CCWGG 1 cut(s) 469
AluBI AGCT 4 cut(s) 106, 334, 397, 531
AluI AGCT 4 cut(s) 106, 334, 397, 531
Alw21I GWGCWC 1 cut(s) 422
Alw26I GTCTC 1 cut(s) 566
ApeKI GCWGC 1 cut(s) 394
ApoI RAATTY 2 cut(s) 147, 200
AseI ATTAAT 1 cut(s) 317
AsuHPI GGTGA 1 cut(s) 533
BanII GRGCYC 2 cut(s) 198, 296
BauI CACGAG 1 cut(s) 360
BbsI GAAGAC 2 cut(s) 69, 102
Bbv12I GWGCWC 1 cut(s) 422
BbvI GCAGC 1 cut(s) 406
BccI CCATC 4 cut(s) 57, 122, 485, 608
BciT130I CCWGG 1 cut(s) 471
BclI TGATCA 1 cut(s) 406
BcoDI GTCTC 1 cut(s) 566
BfaI CTAG 1 cut(s) 107
BfmI CTRYAG 1 cut(s) 504
BisI GCNGC 1 cut(s) 395
BlpI GCTNAGC 1 cut(s) 390
BlsI GCNGC 1 cut(s) 396
Bme1390I CCNGG 1 cut(s) 471
BmrFI CCNGG 1 cut(s) 471
BmsI GCATC 1 cut(s) 211
BpiI GAAGAC 2 cut(s) 69, 102
BpmI CTGGAG 1 cut(s) 284
Bpu1102I GCTNAGC 1 cut(s) 390
BsaJI CCNNGG 1 cut(s) 470
Bsc4I CCNNNNNNNGG 2 cut(s) 204, 351
BseBI CCWGG 1 cut(s) 471
BseDI CCNNGG 1 cut(s) 470
BseGI GGATG 2 cut(s) 226, 481
BseLI CCNNNNNNNGG 2 cut(s) 204, 351
BseMII CTCAG 1 cut(s) 207
BseXI GCAGC 1 cut(s) 406
Bsh1236I CGCG 1 cut(s) 484
BsiHKAI GWGCWC 1 cut(s) 422
BslI CCNNNNNNNGG 2 cut(s) 204, 351
BsmAI GTCTC 1 cut(s) 566
BsmBI CGTCTC 1 cut(s) 566
Bsp1286I GDGCHC 3 cut(s) 198, 296, 422
Bsp143I GATC 1 cut(s) 406
Bsp1720I GCTNAGC 1 cut(s) 390
BspACI CCGC 1 cut(s) 482
BspCNI CTCAG 1 cut(s) 208
BspFNI CGCG 1 cut(s) 484
BspHI TCATGA 2 cut(s) 142, 409
BssECI CCNNGG 1 cut(s) 470
BssMI GATC 1 cut(s) 406
BssSI CACGAG 1 cut(s) 360
Bst2BI CACGAG 1 cut(s) 360
Bst2UI CCWGG 1 cut(s) 471
Bst4CI ACNGT 3 cut(s) 81, 326, 621
Bst6I CTCTTC 1 cut(s) 179
BstC8I GCNNGC 1 cut(s) 332
BstDEI CTNAG 3 cut(s) 216, 390, 604
BstEII GGTNACC 1 cut(s) 23
BstF5I GGATG 2 cut(s) 226, 481
BstFNI CGCG 1 cut(s) 484
BstKTI GATC 1 cut(s) 409
BstMAI GTCTC 1 cut(s) 566
BstMBI GATC 1 cut(s) 406
BstMWI GCNNNNNNNGC 3 cut(s) 291, 308, 605
BstNI CCWGG 1 cut(s) 471
BstPI GGTNACC 1 cut(s) 23
BstSCI CCNGG 1 cut(s) 469
BstSFI CTRYAG 1 cut(s) 504
BstUI CGCG 1 cut(s) 484
BstV1I GCAGC 1 cut(s) 406
BstV2I GAAGAC 2 cut(s) 69, 102
BtsCI GGATG 2 cut(s) 226, 481
Cac8I GCNNGC 1 cut(s) 332
CciI TCATGA 2 cut(s) 142, 409
Csp6I GTAC 1 cut(s) 479
CviAII CATG 5 cut(s) 20, 53, 101, 143, 410
CviJI RGCY 9 cut(s) 106, 196, 294, 334, 344, 389, 397, 503, 531
CviKI_1 RGCY 9 cut(s) 106, 196, 294, 334, 344, 389, 397, 503, 531
CviQI GTAC 1 cut(s) 479
DdeI CTNAG 3 cut(s) 216, 390, 604
DpnI GATC 1 cut(s) 408
DpnII GATC 1 cut(s) 406
Eam1104I CTCTTC 1 cut(s) 179
EarI CTCTTC 1 cut(s) 179
Eco24I GRGCYC 2 cut(s) 198, 296
Eco91I GGTNACC 1 cut(s) 23
EcoO65I GGTNACC 1 cut(s) 23
EcoRI GAATTC 1 cut(s) 200
EcoRII CCWGG 1 cut(s) 469
EcoT38I GRGCYC 2 cut(s) 198, 296
Esp3I CGTCTC 1 cut(s) 566
FaeI CATG 5 cut(s) 23, 56, 104, 146, 413
FatI CATG 5 cut(s) 19, 52, 100, 142, 409
FbaI TGATCA 1 cut(s) 406
Fnu4HI GCNGC 1 cut(s) 395
FokI GGATG 2 cut(s) 233, 488
FriOI GRGCYC 2 cut(s) 198, 296
Fsp4HI GCNGC 1 cut(s) 395
FspBI CTAG 1 cut(s) 107
GluI GCNGC 1 cut(s) 395
GsuI CTGGAG 1 cut(s) 284
Hin1II CATG 5 cut(s) 23, 56, 104, 146, 413
HindIII AAGCTT 1 cut(s) 332
HinfI GANTC 2 cut(s) 139, 356
HphI GGTGA 1 cut(s) 533
Hpy188I TCNGA 2 cut(s) 553, 571
Hpy188III TCNNGA 7 cut(s) 143, 152, 205, 229, 263, 410, 439
HpyAV CCTTC 1 cut(s) 619
HpyCH4III ACNGT 3 cut(s) 81, 326, 621
HpyCH4V TGCA 5 cut(s) 77, 119, 163, 224, 375
HpyF10VI GCNNNNNNNGC 3 cut(s) 291, 308, 605
HpyF3I CTNAG 3 cut(s) 216, 390, 604
Hsp92II CATG 5 cut(s) 23, 56, 104, 146, 413
Ksp22I TGATCA 1 cut(s) 406
Kzo9I GATC 1 cut(s) 406
LpnPI CCDG 6 cut(s) 165, 190, 214, 248, 456, 483
Lsp1109I GCAGC 1 cut(s) 406
LweI GCATC 1 cut(s) 211
MaeI CTAG 1 cut(s) 107
MaeIII GTNAC 4 cut(s) 3, 23, 304, 521
MalI GATC 1 cut(s) 408
MboI GATC 1 cut(s) 406
MboII GAAGA 4 cut(s) 74, 107, 166, 547
MhlI GDGCHC 3 cut(s) 198, 296, 422
MluCI AATT 4 cut(s) 90, 147, 200, 318
MlyI GAGTC 1 cut(s) 148
MmeI TCCRAC 1 cut(s) 549
MnlI CCTC 2 cut(s) 211, 440
MseI TTAA 5 cut(s) 84, 188, 317, 545, 634
MspR9I CCNGG 1 cut(s) 471
MvaI CCWGG 1 cut(s) 471
MvnI CGCG 1 cut(s) 484
MwoI GCNNNNNNNGC 3 cut(s) 291, 308, 605
NdeII GATC 1 cut(s) 406
NlaIII CATG 5 cut(s) 23, 56, 104, 146, 413
NmuCI GTSAC 2 cut(s) 3, 521
PagI TCATGA 2 cut(s) 142, 409
PfeI GAWTC 1 cut(s) 356
PkrI GCNGC 1 cut(s) 396
PleI GAGTC 1 cut(s) 147
PpsI GAGTC 1 cut(s) 147
PshBI ATTAAT 1 cut(s) 317
Psp6I CCWGG 1 cut(s) 469
PspEI GGTNACC 1 cut(s) 23
PspGI CCWGG 1 cut(s) 469
RsaI GTAC 1 cut(s) 480
RsaNI GTAC 1 cut(s) 479
SaqAI TTAA 5 cut(s) 84, 188, 317, 545, 634
SatI GCNGC 1 cut(s) 395
Sau3AI GATC 1 cut(s) 406
SchI GAGTC 1 cut(s) 148
ScrFI CCNGG 1 cut(s) 471
SduI GDGCHC 3 cut(s) 198, 296, 422
SetI ASST 7 cut(s) 108, 336, 399, 451, 533, 559, 630
SfaNI GCATC 1 cut(s) 211
SfcI CTRYAG 1 cut(s) 504
Sse9I AATT 4 cut(s) 90, 147, 200, 318
SsiI CCGC 1 cut(s) 482
SspMI CTAG 1 cut(s) 107
StyD4I CCNGG 1 cut(s) 469
TaaI ACNGT 3 cut(s) 81, 326, 621
TaqI TCGA 3 cut(s) 241, 276, 438
TasI AATT 4 cut(s) 90, 147, 200, 318
TfiI GAWTC 1 cut(s) 356
Tru1I TTAA 5 cut(s) 84, 188, 317, 545, 634
Tru9I TTAA 5 cut(s) 84, 188, 317, 545, 634
TseFI GTSAC 2 cut(s) 3, 521
TseI GCWGC 1 cut(s) 394
Tsp45I GTSAC 2 cut(s) 3, 521
TspDTI ATGAA 3 cut(s) 159, 426, 600
VspI ATTAAT 1 cut(s) 317
XapI RAATTY 2 cut(s) 147, 200
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.