MD03G1230700.v1.1

protein phosphatase 2C 39

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0011687
Physical Location & Seq
Reverse (-)
31589707 .. 31592642
2936 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1230700.v1.1.491

Sequence Viewer

Length: 849 bp
ATGACCGGCAAAGAAATTCTCCATAAGATGAAGGAGAAAGTTTTAGGTCCATCAGACCCCGACTCTGGAAAAGGAAAGAGCAAGATGTCGCATCACATAACACATGGCTTCCACTTGGTAAAGGGAAAATCCCATCATCCTATGGAAGATTATGTTGTTGCGCAATTTAAGCACATCGATGACCACGAGCTTGGACTATTTGCAATATTTGATGGTCATTTGAGCCATGAAATTCCTGAGTACTTGCAGTCTAATCTCTTTAAGAATATTGTAGAAGAGCCTGATTTCTGGACAGAACCCAAGAAGGCAGTTGAAAGAGCATATCGTGTAACAGATGCTAACATTCTGGAGAAAGCAGTTGATTTGGGCAAAGGGGGTTCAACAGCAGTTACGGCCATTTTAATTGACTGCCAGAAGCTGGTGGTAGCCAATGTTGGGGATTCTCGAGCTATTATCTGCAAGAATGGTGTTGCTAAACAATTATCTGTTGATCACGAGCCTAGCACAGAAAGAGAAGATATCGAGAACAGAGGTGGTTTTGTATCAAACTTTCCAGGGAACGTTCCACGGGTTGATGGGCAGTTGGCGGTAGCAAGAGCATTTGGCGACAAGAGCTTGAAGAAACATCTCAGTTCTGAACCTTATGTGATAATGGATTTAATAGATGATACCACAGAGTTCGTTGTCCTGGCAAGCGATGGACTATGGAAGGTGATGACGAACCAAGAAGTTGTGGATTGTATCATACATATAAAGGATGCGCGGGCAGCAGCAAAGCGCCTTACTGAAGAGGCCGTCGATAGGAAGAGTTCTGATGATATTTCCTGTATAGTTGTAAGATTCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

283

Amino Acids

31.33

Weight (kDa)

6.06

Isoelectric Point (pI)

36.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 44 - 274 2.2e-53 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011687)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15260 AT3G15260
fragaria_vesca FvH4_3g19640 FvH4_3g19640
malus_domestica MD03G1230700.v1.1 MD11G1251900.v1.1
prunus_persica Prupe.4G177100_v2.0.a1
pyrus_communis pycom03g17840 pycom11g22340
rosa_chinensis RchiOBHm_Chr5g0032841
rosa_laevigata RLG00000033433
rosa_multiflora Rmu_sc0000986.1_g000035
rosa_roxburghii Rroxscaffold_1G00047190
rosa_rugosa Rorug05G0134100
rosa_samantha Rh5AG227000 Rh5BG228300 Rh5CG256100 Rh5DG233100
rosa_wichuraiana Rw5G020810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 162
AccB7I CCANNNNNTGG 1 cut(s) 418
AccII CGCG 1 cut(s) 763
AciI CCGC 2 cut(s) 587, 763
AclI AACGTT 1 cut(s) 561
AcoI YGGCCR 1 cut(s) 393
AcsI RAATTY 2 cut(s) 15, 231
AcuI CTGAAG 1 cut(s) 807
AfaI GTAC 1 cut(s) 242
AfiI CCNNNNNNNGG 4 cut(s) 65, 418, 435, 801
AgsI TTSAA 3 cut(s) 314, 381, 619
AjnI CCWGG 2 cut(s) 553, 687
AluBI AGCT 4 cut(s) 190, 418, 449, 615
AluI AGCT 4 cut(s) 190, 418, 449, 615
AlwNI CAGNNNCTG 1 cut(s) 418
Ama87I CYCGRG 1 cut(s) 444
AoxI GGCC 2 cut(s) 393, 792
ApeKI GCWGC 2 cut(s) 767, 770
ApoI RAATTY 2 cut(s) 15, 231
AspLEI GCGC 3 cut(s) 163, 763, 780
AspS9I GGNCC 1 cut(s) 47
AsuHPI GGTGA 1 cut(s) 724
AvaI CYCGRG 1 cut(s) 444
AvaII GGWCC 1 cut(s) 47
BauI CACGAG 2 cut(s) 185, 494
BbvI GCAGC 2 cut(s) 779, 782
BccI CCATC 5 cut(s) 58, 141, 206, 569, 692
BceAI ACGGC 2 cut(s) 408, 779
BciT130I CCWGG 2 cut(s) 555, 689
BclI TGATCA 1 cut(s) 490
BfaI CTAG 1 cut(s) 501
BfoI RGCGCY 1 cut(s) 781
BisI GCNGC 2 cut(s) 768, 771
BlsI GCNGC 2 cut(s) 769, 772
BmcAI AGTACT 1 cut(s) 242
Bme1390I CCNGG 2 cut(s) 555, 689
Bme18I GGWCC 1 cut(s) 47
BmeT110I CYCGRG 1 cut(s) 444
BmgT120I GGNCC 1 cut(s) 47
BmrFI CCNGG 2 cut(s) 555, 689
BmsI GCATC 3 cut(s) 100, 325, 748
BpmI CTGGAG 1 cut(s) 368
Bsa29I ATCGAT 1 cut(s) 177
BsaJI CCNNGG 2 cut(s) 554, 566
BsaWI WCCGGW 1 cut(s) 843
Bsc4I CCNNNNNNNGG 4 cut(s) 65, 418, 435, 801
Bse118I RCCGGY 1 cut(s) 5
BseBI CCWGG 2 cut(s) 555, 689
BseCI ATCGAT 1 cut(s) 177
BseDI CCNNGG 2 cut(s) 554, 566
BseGI GGATG 2 cut(s) 136, 763
BseLI CCNNNNNNNGG 4 cut(s) 65, 418, 435, 801
BseMII CTCAG 2 cut(s) 228, 643
BseXI GCAGC 2 cut(s) 779, 782
Bsh1236I CGCG 1 cut(s) 763
BshFI GGCC 2 cut(s) 395, 794
BshVI ATCGAT 1 cut(s) 177
BsiHKCI CYCGRG 1 cut(s) 444
BsiSI CCGG 2 cut(s) 6, 844
BslI CCNNNNNNNGG 4 cut(s) 65, 418, 435, 801
BsnI GGCC 2 cut(s) 395, 794
BsoBI CYCGRG 1 cut(s) 444
Bsp143I GATC 1 cut(s) 490
BspACI CCGC 2 cut(s) 587, 763
BspANI GGCC 2 cut(s) 395, 794
BspCNI CTCAG 2 cut(s) 229, 642
BspDI ATCGAT 1 cut(s) 177
BspFNI CGCG 1 cut(s) 763
BspQI GCTCTTC 1 cut(s) 270
BsrFI RCCGGY 1 cut(s) 5
BssAI RCCGGY 1 cut(s) 5
BssECI CCNNGG 2 cut(s) 554, 566
BssMI GATC 1 cut(s) 490
BssSI CACGAG 2 cut(s) 185, 494
Bst2BI CACGAG 2 cut(s) 185, 494
Bst2UI CCWGG 2 cut(s) 555, 689
Bst6I CTCTTC 3 cut(s) 270, 783, 800
BstC8I GCNNGC 2 cut(s) 694, 765
BstDEI CTNAG 2 cut(s) 237, 629
BstDSI CCRYGG 1 cut(s) 566
BstF5I GGATG 2 cut(s) 136, 763
BstFNI CGCG 1 cut(s) 763
BstH2I RGCGCY 1 cut(s) 781
BstHHI GCGC 3 cut(s) 163, 763, 780
BstKTI GATC 1 cut(s) 493
BstMBI GATC 1 cut(s) 490
BstMWI GCNNNNNNNGC 4 cut(s) 169, 392, 612, 767
BstNI CCWGG 2 cut(s) 555, 689
BstSCI CCNGG 2 cut(s) 553, 687
BstUI CGCG 1 cut(s) 763
BstV1I GCAGC 2 cut(s) 779, 782
BstXI CCANNNNNNTGG 1 cut(s) 191
Bsu15I ATCGAT 1 cut(s) 177
BsuRI GGCC 2 cut(s) 395, 794
BsuTUI ATCGAT 1 cut(s) 177
BtgI CCRYGG 1 cut(s) 566
BtgZI GCGATG 1 cut(s) 711
BtsCI GGATG 2 cut(s) 136, 763
Cac8I GCNNGC 2 cut(s) 694, 765
CaiI CAGNNNCTG 1 cut(s) 418
CfoI GCGC 3 cut(s) 163, 763, 780
Cfr10I RCCGGY 1 cut(s) 5
Cfr13I GGNCC 1 cut(s) 47
ClaI ATCGAT 1 cut(s) 177
Csp6I GTAC 1 cut(s) 241
CviAII CATG 2 cut(s) 104, 227
CviQI GTAC 1 cut(s) 241
DdeI CTNAG 2 cut(s) 237, 629
DpnI GATC 1 cut(s) 492
DpnII GATC 1 cut(s) 490
EaeI YGGCCR 1 cut(s) 393
Eam1104I CTCTTC 3 cut(s) 270, 783, 800
EarI CTCTTC 3 cut(s) 270, 783, 800
Eco32I GATATC 1 cut(s) 520
Eco47I GGWCC 1 cut(s) 47
Eco57I CTGAAG 1 cut(s) 807
Eco88I CYCGRG 1 cut(s) 444
EcoRII CCWGG 2 cut(s) 553, 687
EcoRV GATATC 1 cut(s) 520
FaeI CATG 2 cut(s) 107, 230
FatI CATG 2 cut(s) 103, 226
FauI CCCGC 1 cut(s) 756
FbaI TGATCA 1 cut(s) 490
Fnu4HI GCNGC 2 cut(s) 768, 771
FokI GGATG 2 cut(s) 123, 770
Fsp4HI GCNGC 2 cut(s) 768, 771
FspBI CTAG 1 cut(s) 501
FspI TGCGCA 1 cut(s) 162
GlaI GCGC 3 cut(s) 162, 762, 779
GluI GCNGC 2 cut(s) 768, 771
GsuI CTGGAG 1 cut(s) 368
HaeII RGCGCY 1 cut(s) 781
HaeIII GGCC 2 cut(s) 395, 794
HapII CCGG 2 cut(s) 6, 844
HhaI GCGC 3 cut(s) 163, 763, 780
Hin1II CATG 2 cut(s) 107, 230
Hin6I GCGC 3 cut(s) 161, 761, 778
HinP1I GCGC 3 cut(s) 161, 761, 778
HinfI GANTC 3 cut(s) 62, 440, 840
HpaII CCGG 2 cut(s) 6, 844
HphI GGTGA 1 cut(s) 724
Hpy188I TCNGA 3 cut(s) 55, 637, 814
Hpy188III TCNNGA 7 cut(s) 66, 236, 289, 347, 444, 494, 523
Hpy99I CGWCG 1 cut(s) 800
HpyAV CCTTC 3 cut(s) 25, 298, 703
HpyCH4IV ACGT 1 cut(s) 561
HpyCH4V TGCA 3 cut(s) 203, 247, 459
HpyF10VI GCNNNNNNNGC 4 cut(s) 169, 392, 612, 767
HpyF3I CTNAG 2 cut(s) 237, 629
HpySE526I ACGT 1 cut(s) 561
Hsp92II CATG 2 cut(s) 107, 230
HspAI GCGC 3 cut(s) 161, 761, 778
Ksp22I TGATCA 1 cut(s) 490
Kzo9I GATC 1 cut(s) 490
LguI GCTCTTC 1 cut(s) 270
Lsp1109I GCAGC 2 cut(s) 779, 782
LweI GCATC 3 cut(s) 100, 325, 748
MaeI CTAG 1 cut(s) 501
MaeII ACGT 1 cut(s) 561
MaeIII GTNAC 2 cut(s) 328, 388
MalI GATC 1 cut(s) 492
MboI GATC 1 cut(s) 490
MboII GAAGA 6 cut(s) 158, 287, 527, 631, 800, 817
MluCI AATT 5 cut(s) 15, 164, 231, 402, 479
MlyI GAGTC 1 cut(s) 56
MnlI CCTC 2 cut(s) 524, 784
MseI TTAA 4 cut(s) 168, 261, 401, 659
MslI CAYNNNNRTG 1 cut(s) 177
MspI CCGG 2 cut(s) 6, 844
MspR9I CCNGG 2 cut(s) 555, 689
MvaI CCWGG 2 cut(s) 555, 689
MvnI CGCG 1 cut(s) 763
MwoI GCNNNNNNNGC 4 cut(s) 169, 392, 612, 767
NdeII GATC 1 cut(s) 490
NlaIII CATG 2 cut(s) 107, 230
NsbI TGCGCA 1 cut(s) 162
PaeR7I CTCGAG 1 cut(s) 444
PciSI GCTCTTC 1 cut(s) 270
PcsI WCGNNNNNNNCGW 1 cut(s) 183
PfeI GAWTC 2 cut(s) 440, 840
PflMI CCANNNNNTGG 1 cut(s) 418
PkrI GCNGC 2 cut(s) 769, 772
PleI GAGTC 1 cut(s) 56
PpsI GAGTC 1 cut(s) 56
Psp1406I AACGTT 1 cut(s) 561
Psp6I CCWGG 2 cut(s) 553, 687
PspGI CCWGG 2 cut(s) 553, 687
PspPI GGNCC 1 cut(s) 47
PstNI CAGNNNCTG 1 cut(s) 418
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
RseI CAYNNNNRTG 1 cut(s) 177
SapI GCTCTTC 1 cut(s) 270
SaqAI TTAA 4 cut(s) 168, 261, 401, 659
SatI GCNGC 2 cut(s) 768, 771
Sau3AI GATC 1 cut(s) 490
Sau96I GGNCC 1 cut(s) 47
ScaI AGTACT 1 cut(s) 242
SchI GAGTC 1 cut(s) 56
ScrFI CCNGG 2 cut(s) 555, 689
SetI ASST 9 cut(s) 49, 192, 420, 451, 535, 564, 617, 643, 714
SfaNI GCATC 3 cut(s) 100, 325, 748
Sfr274I CTCGAG 1 cut(s) 444
SinI GGWCC 1 cut(s) 47
SlaI CTCGAG 1 cut(s) 444
SmiMI CAYNNNNRTG 1 cut(s) 177
SmlI CTYRAG 1 cut(s) 444
SmoI CTYRAG 1 cut(s) 444
Sse9I AATT 5 cut(s) 15, 164, 231, 402, 479
SsiI CCGC 2 cut(s) 587, 763
SspI AATATT 2 cut(s) 207, 268
SspMI CTAG 1 cut(s) 501
StyD4I CCNGG 2 cut(s) 553, 687
TaiI ACGT 1 cut(s) 564
TaqI TCGA 4 cut(s) 177, 445, 522, 798
TasI AATT 5 cut(s) 15, 164, 231, 402, 479
TatI WGTACW 1 cut(s) 240
TfiI GAWTC 2 cut(s) 440, 840
Tru1I TTAA 4 cut(s) 168, 261, 401, 659
Tru9I TTAA 4 cut(s) 168, 261, 401, 659
TseI GCWGC 2 cut(s) 767, 770
TspDTI ATGAA 2 cut(s) 44, 243
Van91I CCANNNNNTGG 1 cut(s) 418
VpaK11BI GGWCC 1 cut(s) 47
XapI RAATTY 2 cut(s) 15, 231
XhoI CTCGAG 1 cut(s) 444
XspI CTAG 1 cut(s) 501
ZrmI AGTACT 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.