Rh5BG228300

protein phosphatase 2C 39

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0011687
Physical Location & Seq
Forward (+)
26797328 .. 26799719
2392 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG228300.1

Sequence Viewer

Length: 849 bp
ATGACAGGCAAGGAAATCCTCCACAAGATGAAGGAAAAAGTTTTAGGTCCATCGGACCCTGACTCTGGCAAAGGTAAGAGCAAGATGTCACATAATATATCACATGGTTACCACTTGGTAAAGGGAAAATCCCATCATGCTATGGAAGACTATGTTGTTGCACAGTTTAAGCAAATTGAAGACCATGAGCTAGGACTATTTGCAATCTTTGATGGGCATTTGAGTCATGAAATTCCTGAATACTTGCAGTCTAATCTCTTCAATAATATCTTAAAAGAGCCCGAATTCTGGGAAGAAACTGAGGATGCAGTCAGGAAAGCATATCGAATAACTGATACTAACATTCTGGAGAAAGCAGTCGATTTGGGCAAAGGGGGCTCAACTGCTGTTACTGCCATATTAATTGACTGTCGCAAGCTTGTGGTAGCCAATGTTGGGGATTCTCGTGCTATTATCTGCAAGAATGGTGTGGCTAAGCAGCTATCTGTTGATCATGAACCGAGCACAGAGAGAGAGCAAATCGAGAACAGAGGTGGTTTTGTATCAAACTTTCCAGGGGATGTACCACGTGTTGATGGGCAGTTGGCTGTAGCACGGGCATTCGGTGACAAGAGCTTGAAGAAACATTTAAGTTCTGAACCTTTTGTGATGTCGGAGACGATAGATGATGAAACAGAGTTTGCTGTCTTAGCAAGTGATGGACTGTGGAAGGTGATGACAAACCAAGAAGTTGTGGATGCCATAAAAAATATTAAGGATGCTCGGGCAGCAGCAAAGCATCTTACTGAAGAGGCAGTCAATAGGAAGAGCTCGGACGACATTTCCTGTGTAGTTGTAAGATTTCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

282

Amino Acids

31.3

Weight (kDa)

5.86

Isoelectric Point (pI)

44.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 45 - 274 4.5e-55 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011687)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15260 AT3G15260
fragaria_vesca FvH4_3g19640 FvH4_3g19640
malus_domestica MD03G1230700.v1.1 MD11G1251900.v1.1
prunus_persica Prupe.4G177100_v2.0.a1
pyrus_communis pycom03g17840 pycom11g22340
rosa_chinensis RchiOBHm_Chr5g0032841
rosa_laevigata RLG00000033433
rosa_multiflora Rmu_sc0000986.1_g000035
rosa_roxburghii Rroxscaffold_1G00047190
rosa_rugosa Rorug05G0134100
rosa_samantha Rh5AG227000 Rh5BG228300 Rh5CG256100 Rh5DG233100
rosa_wichuraiana Rw5G020810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 231, 284
AcuI CTGAAG 1 cut(s) 807
AcvI CACGTG 1 cut(s) 569
AfaI GTAC 1 cut(s) 564
AfiI CCNNNNNNNGG 3 cut(s) 65, 288, 435
AflIII ACRYGT 1 cut(s) 568
AgsI TTSAA 3 cut(s) 179, 262, 619
AjnI CCWGG 1 cut(s) 553
AluBI AGCT 5 cut(s) 190, 418, 481, 615, 810
AluI AGCT 5 cut(s) 190, 418, 481, 615, 810
Alw21I GWGCWC 2 cut(s) 506, 812
Alw26I GTCTC 1 cut(s) 650
Ama87I CYCGRG 1 cut(s) 762
ApeKI GCWGC 3 cut(s) 478, 767, 770
ApoI RAATTY 2 cut(s) 231, 284
AseI ATTAAT 1 cut(s) 401
AspS9I GGNCC 2 cut(s) 47, 55
AsuHPI GGTGA 2 cut(s) 617, 724
AvaI CYCGRG 1 cut(s) 762
AvaII GGWCC 2 cut(s) 47, 55
BanII GRGCYC 3 cut(s) 282, 380, 812
BauI CACGAG 1 cut(s) 444
BbrPI CACGTG 1 cut(s) 569
BbsI GAAGAC 2 cut(s) 153, 186
Bbv12I GWGCWC 2 cut(s) 506, 812
BbvI GCAGC 3 cut(s) 490, 779, 782
BccI CCATC 5 cut(s) 58, 141, 206, 569, 692
BciT130I CCWGG 1 cut(s) 555
BclI TGATCA 1 cut(s) 490
BcoDI GTCTC 1 cut(s) 650
BfaI CTAG 1 cut(s) 191
BfmI CTRYAG 1 cut(s) 588
BisI GCNGC 3 cut(s) 479, 768, 771
BlpI GCTNAGC 1 cut(s) 474
BlsI GCNGC 3 cut(s) 480, 769, 772
Bme1390I CCNGG 1 cut(s) 555
Bme18I GGWCC 2 cut(s) 47, 55
BmeT110I CYCGRG 1 cut(s) 762
BmgT120I GGNCC 2 cut(s) 47, 55
BmiI GGNNCC 1 cut(s) 57
BmrFI CCNGG 1 cut(s) 555
BmsI GCATC 4 cut(s) 295, 727, 748, 787
BpiI GAAGAC 2 cut(s) 153, 186
BpmI CTGGAG 1 cut(s) 368
Bpu1102I GCTNAGC 1 cut(s) 474
BsaAI YACGTR 1 cut(s) 569
BsaJI CCNNGG 1 cut(s) 554
Bsc4I CCNNNNNNNGG 3 cut(s) 65, 288, 435
BseBI CCWGG 1 cut(s) 555
BseDI CCNNGG 1 cut(s) 554
BseGI GGATG 4 cut(s) 310, 565, 742, 763
BseLI CCNNNNNNNGG 3 cut(s) 65, 288, 435
BseMII CTCAG 1 cut(s) 291
BseXI GCAGC 3 cut(s) 490, 779, 782
BsiHKAI GWGCWC 2 cut(s) 506, 812
BsiHKCI CYCGRG 1 cut(s) 762
BslI CCNNNNNNNGG 3 cut(s) 65, 288, 435
BsmAI GTCTC 1 cut(s) 650
BsmBI CGTCTC 1 cut(s) 650
BsmI GAATGC 1 cut(s) 599
BsoBI CYCGRG 1 cut(s) 762
Bsp1286I GDGCHC 4 cut(s) 282, 380, 506, 812
Bsp143I GATC 1 cut(s) 490
Bsp1720I GCTNAGC 1 cut(s) 474
BspCNI CTCAG 1 cut(s) 292
BspHI TCATGA 2 cut(s) 226, 493
BspLI GGNNCC 1 cut(s) 57
BspQI GCTCTTC 1 cut(s) 800
BssECI CCNNGG 1 cut(s) 554
BssMI GATC 1 cut(s) 490
BssSI CACGAG 1 cut(s) 444
Bst2BI CACGAG 1 cut(s) 444
Bst2UI CCWGG 1 cut(s) 555
Bst4CI ACNGT 3 cut(s) 165, 410, 705
Bst6I CTCTTC 3 cut(s) 263, 783, 800
BstBAI YACGTR 1 cut(s) 569
BstC8I GCNNGC 1 cut(s) 416
BstDEI CTNAG 3 cut(s) 300, 474, 688
BstEII GGTNACC 1 cut(s) 107
BstF5I GGATG 4 cut(s) 310, 565, 742, 763
BstKTI GATC 1 cut(s) 493
BstMAI GTCTC 1 cut(s) 650
BstMBI GATC 1 cut(s) 490
BstMWI GCNNNNNNNGC 4 cut(s) 375, 392, 689, 767
BstNI CCWGG 1 cut(s) 555
BstPI GGTNACC 1 cut(s) 107
BstSCI CCNGG 1 cut(s) 553
BstSFI CTRYAG 1 cut(s) 588
BstV1I GCAGC 3 cut(s) 490, 779, 782
BstV2I GAAGAC 2 cut(s) 153, 186
BtsCI GGATG 4 cut(s) 310, 565, 742, 763
Cac8I GCNNGC 1 cut(s) 416
CciI TCATGA 2 cut(s) 226, 493
Cfr13I GGNCC 2 cut(s) 47, 55
Csp6I GTAC 1 cut(s) 563
CviAII CATG 5 cut(s) 104, 137, 185, 227, 494
CviQI GTAC 1 cut(s) 563
DdeI CTNAG 3 cut(s) 300, 474, 688
DpnI GATC 1 cut(s) 492
DpnII GATC 1 cut(s) 490
Eam1104I CTCTTC 3 cut(s) 263, 783, 800
EarI CTCTTC 3 cut(s) 263, 783, 800
Ecl136II GAGCTC 1 cut(s) 810
Eco24I GRGCYC 3 cut(s) 282, 380, 812
Eco47I GGWCC 2 cut(s) 47, 55
Eco53kI GAGCTC 1 cut(s) 810
Eco57I CTGAAG 1 cut(s) 807
Eco72I CACGTG 1 cut(s) 569
Eco88I CYCGRG 1 cut(s) 762
Eco91I GGTNACC 1 cut(s) 107
EcoICRI GAGCTC 1 cut(s) 810
EcoO65I GGTNACC 1 cut(s) 107
EcoRI GAATTC 1 cut(s) 284
EcoRII CCWGG 1 cut(s) 553
EcoT38I GRGCYC 3 cut(s) 282, 380, 812
Esp3I CGTCTC 1 cut(s) 650
FaeI CATG 5 cut(s) 107, 140, 188, 230, 497
FatI CATG 5 cut(s) 103, 136, 184, 226, 493
FbaI TGATCA 1 cut(s) 490
Fnu4HI GCNGC 3 cut(s) 479, 768, 771
FokI GGATG 4 cut(s) 317, 572, 749, 770
FriOI GRGCYC 3 cut(s) 282, 380, 812
Fsp4HI GCNGC 3 cut(s) 479, 768, 771
FspBI CTAG 1 cut(s) 191
GluI GCNGC 3 cut(s) 479, 768, 771
GsuI CTGGAG 1 cut(s) 368
Hin1II CATG 5 cut(s) 107, 140, 188, 230, 497
HindIII AAGCTT 1 cut(s) 416
HinfI GANTC 3 cut(s) 62, 223, 440
HphI GGTGA 2 cut(s) 617, 724
Hpy188I TCNGA 4 cut(s) 55, 637, 655, 814
Hpy188III TCNNGA 6 cut(s) 227, 236, 313, 347, 494, 523
HpyAV CCTTC 2 cut(s) 25, 703
HpyCH4III ACNGT 3 cut(s) 165, 410, 705
HpyCH4IV ACGT 1 cut(s) 568
HpyCH4V TGCA 5 cut(s) 161, 203, 247, 308, 459
HpyF10VI GCNNNNNNNGC 4 cut(s) 375, 392, 689, 767
HpyF3I CTNAG 3 cut(s) 300, 474, 688
HpySE526I ACGT 1 cut(s) 568
Hsp92II CATG 5 cut(s) 107, 140, 188, 230, 497
Ksp22I TGATCA 1 cut(s) 490
Kzo9I GATC 1 cut(s) 490
LguI GCTCTTC 1 cut(s) 800
LpnPI CCDG 9 cut(s) 51, 72, 249, 274, 298, 332, 540, 567, 838
Lsp1109I GCAGC 3 cut(s) 490, 779, 782
LweI GCATC 4 cut(s) 295, 727, 748, 787
MaeI CTAG 1 cut(s) 191
MaeII ACGT 1 cut(s) 568
MaeIII GTNAC 4 cut(s) 87, 107, 388, 605
MalI GATC 1 cut(s) 492
MboI GATC 1 cut(s) 490
MboII GAAGA 7 cut(s) 158, 191, 250, 305, 631, 800, 817
MhlI GDGCHC 4 cut(s) 282, 380, 506, 812
MluCI AATT 4 cut(s) 174, 231, 284, 402
MlyI GAGTC 2 cut(s) 56, 232
MmeI TCCRAC 1 cut(s) 633
MnlI CCTC 4 cut(s) 29, 295, 524, 784
MseI TTAA 5 cut(s) 168, 272, 401, 629, 753
MspR9I CCNGG 1 cut(s) 555
Mva1269I GAATGC 1 cut(s) 599
MvaI CCWGG 1 cut(s) 555
MwoI GCNNNNNNNGC 4 cut(s) 375, 392, 689, 767
NdeII GATC 1 cut(s) 490
NlaIII CATG 5 cut(s) 107, 140, 188, 230, 497
NlaIV GGNNCC 1 cut(s) 57
NmuCI GTSAC 2 cut(s) 87, 605
PagI TCATGA 2 cut(s) 226, 493
PciSI GCTCTTC 1 cut(s) 800
PctI GAATGC 1 cut(s) 599
PfeI GAWTC 1 cut(s) 440
PkrI GCNGC 3 cut(s) 480, 769, 772
PleI GAGTC 2 cut(s) 56, 231
PmaCI CACGTG 1 cut(s) 569
PmlI CACGTG 1 cut(s) 569
PpsI GAGTC 2 cut(s) 56, 231
Ppu21I YACGTR 1 cut(s) 569
PshBI ATTAAT 1 cut(s) 401
Psp124BI GAGCTC 1 cut(s) 812
Psp6I CCWGG 1 cut(s) 553
PspCI CACGTG 1 cut(s) 569
PspEI GGTNACC 1 cut(s) 107
PspGI CCWGG 1 cut(s) 553
PspN4I GGNNCC 1 cut(s) 57
PspPI GGNCC 2 cut(s) 47, 55
RsaI GTAC 1 cut(s) 564
RsaNI GTAC 1 cut(s) 563
SacI GAGCTC 1 cut(s) 812
SapI GCTCTTC 1 cut(s) 800
SaqAI TTAA 5 cut(s) 168, 272, 401, 629, 753
SatI GCNGC 3 cut(s) 479, 768, 771
Sau3AI GATC 1 cut(s) 490
Sau96I GGNCC 2 cut(s) 47, 55
SchI GAGTC 2 cut(s) 56, 232
ScrFI CCNGG 1 cut(s) 555
SduI GDGCHC 4 cut(s) 282, 380, 506, 812
SfaNI GCATC 4 cut(s) 295, 727, 748, 787
SfcI CTRYAG 1 cut(s) 588
SinI GGWCC 2 cut(s) 47, 55
Sse9I AATT 4 cut(s) 174, 231, 284, 402
SspI AATATT 1 cut(s) 751
SspMI CTAG 1 cut(s) 191
SstI GAGCTC 1 cut(s) 812
StyD4I CCNGG 1 cut(s) 553
TaaI ACNGT 3 cut(s) 165, 410, 705
TaiI ACGT 1 cut(s) 571
TaqI TCGA 3 cut(s) 325, 360, 522
TasI AATT 4 cut(s) 174, 231, 284, 402
TfiI GAWTC 1 cut(s) 440
Tru1I TTAA 5 cut(s) 168, 272, 401, 629, 753
Tru9I TTAA 5 cut(s) 168, 272, 401, 629, 753
TseFI GTSAC 2 cut(s) 87, 605
TseI GCWGC 3 cut(s) 478, 767, 770
Tsp45I GTSAC 2 cut(s) 87, 605
TspDTI ATGAA 4 cut(s) 44, 243, 510, 684
VpaK11BI GGWCC 2 cut(s) 47, 55
VspI ATTAAT 1 cut(s) 401
XapI RAATTY 2 cut(s) 231, 284
XspI CTAG 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.