Prupe.4G177100_v2.0.a1

protein phosphatase 2C 39

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0011687
Physical Location & Seq
Forward (+)
10505281 .. 10508243
2963 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G177100.1

Sequence Viewer

Length: 849 bp
ATGACCGGCAGAGAAATTCTCCATAAGATGAAGGAAAAAGTTTTAGGTCCATCAGACCCTGACTCTGGAAAAGGAAAAAGCAAAATGTCACACCATATAACACATGGCTTCCACTTGGTAAAGGGAAAATCCCATCATGCTATGGAAGACTATGTTGTTGCACAGTTTAAGCAAATCGATGACCATGAGCTAGGACTATTTGCAATTTTTGATGGCCATTTAAGCCATGAAATTCCTGAGTACTTGCAGTCCAATCTCTTTAACAATATCTTAACAGAGCCTGATTTCTGGACAGAAACGGAGAATGCAGTCAGGAGAGCATATTGTGTAACAGATACTAACATTCTGGAGAAGGCAGTTGATTTGGGCAAAGGGGGTTCAACTGCAGTTACGGCCATATTAATTGACTGCCAGAAGCTGGTAGTAGCCAATGTTGGGGATTCTCGAGCTATTATTTGTAACAATGGTGTAGCAAAACAACTATCTGTTGATCATGAGCCTAGCACAGAAAGAGAAGAAATTGAGAACAGAGGTGGTTTCGTGTCAAACTTTCCAGGGGATGTTCCACGGGTTGATGGGCAGTTGGCAGTAGCAAGAGCGTTTGGTGACAAGAGCTTGAAGAAACATCTCAGTTCTGAACCTCATGTAATGGTGGCTTTAATAGACGAGAAGACAGAGTTCATTGTCTTGGCAAGTGATGGACTATGGAAGGTGATGTCAAACCAAGAAGTTGCGGATTCTATCAAAGATATAAAGGATGCCCGGGCAGCAGCGAAGCACCTTACGGAAGAGGCAGTGAATAGGAAGAGCTCTGATGATATTTCTTGTGTAGTTGTAAGATTTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

283

Amino Acids

31.14

Weight (kDa)

5.77

Isoelectric Point (pI)

40.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011687)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15260 AT3G15260
fragaria_vesca FvH4_3g19640 FvH4_3g19640
malus_domestica MD03G1230700.v1.1 MD11G1251900.v1.1
prunus_persica Prupe.4G177100_v2.0.a1
pyrus_communis pycom03g17840 pycom11g22340
rosa_chinensis RchiOBHm_Chr5g0032841
rosa_laevigata RLG00000033433
rosa_multiflora Rmu_sc0000986.1_g000035
rosa_roxburghii Rroxscaffold_1G00047190
rosa_rugosa Rorug05G0134100
rosa_samantha Rh5AG227000 Rh5BG228300 Rh5CG256100 Rh5DG233100
rosa_wichuraiana Rw5G020810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 418
AciI CCGC 1 cut(s) 734
AcoI YGGCCR 2 cut(s) 214, 393
AcsI RAATTY 2 cut(s) 15, 231
AfaI GTAC 1 cut(s) 242
AfiI CCNNNNNNNGG 3 cut(s) 65, 418, 435
AgsI TTSAA 2 cut(s) 381, 619
AjnI CCWGG 1 cut(s) 553
AluBI AGCT 5 cut(s) 190, 418, 449, 615, 810
AluI AGCT 5 cut(s) 190, 418, 449, 615, 810
Alw21I GWGCWC 1 cut(s) 812
AlwNI CAGNNNCTG 3 cut(s) 59, 281, 418
Ama87I CYCGRG 2 cut(s) 444, 762
AoxI GGCC 2 cut(s) 214, 393
ApeKI GCWGC 2 cut(s) 767, 770
ApoI RAATTY 2 cut(s) 15, 231
AseI ATTAAT 1 cut(s) 401
AspS9I GGNCC 1 cut(s) 47
AsuC2I CCSGG 2 cut(s) 763, 764
AsuHPI GGTGA 2 cut(s) 617, 724
AvaI CYCGRG 2 cut(s) 444, 762
AvaII GGWCC 1 cut(s) 47
BalI TGGCCA 1 cut(s) 216
BanII GRGCYC 1 cut(s) 812
BbsI GAAGAC 2 cut(s) 153, 677
Bbv12I GWGCWC 1 cut(s) 812
BbvI GCAGC 2 cut(s) 779, 782
BccI CCATC 5 cut(s) 58, 141, 206, 569, 692
BceAI ACGGC 1 cut(s) 408
BciT130I CCWGG 1 cut(s) 555
BclI TGATCA 1 cut(s) 490
BcnI CCSGG 2 cut(s) 763, 764
BfaI CTAG 2 cut(s) 191, 501
BfmI CTRYAG 1 cut(s) 384
BisI GCNGC 2 cut(s) 768, 771
BlsI GCNGC 2 cut(s) 769, 772
BmcAI AGTACT 1 cut(s) 242
Bme1390I CCNGG 3 cut(s) 555, 763, 764
Bme18I GGWCC 1 cut(s) 47
BmeT110I CYCGRG 2 cut(s) 444, 762
BmgT120I GGNCC 1 cut(s) 47
BmrFI CCNGG 3 cut(s) 555, 763, 764
BmsI GCATC 1 cut(s) 748
BpiI GAAGAC 2 cut(s) 153, 677
BplI GAGNNNNNCTC 1 cut(s) 35
BpmI CTGGAG 1 cut(s) 368
BpuMI CCSGG 2 cut(s) 763, 764
Bsa29I ATCGAT 1 cut(s) 177
BsaJI CCNNGG 3 cut(s) 554, 566, 762
Bsc4I CCNNNNNNNGG 3 cut(s) 65, 418, 435
Bse118I RCCGGY 1 cut(s) 5
BseBI CCWGG 1 cut(s) 555
BseCI ATCGAT 1 cut(s) 177
BseDI CCNNGG 3 cut(s) 554, 566, 762
BseGI GGATG 2 cut(s) 565, 763
BseLI CCNNNNNNNGG 3 cut(s) 65, 418, 435
BseMII CTCAG 2 cut(s) 228, 643
BseXI GCAGC 2 cut(s) 779, 782
BshFI GGCC 2 cut(s) 216, 395
BshVI ATCGAT 1 cut(s) 177
BsiHKAI GWGCWC 1 cut(s) 812
BsiHKCI CYCGRG 2 cut(s) 444, 762
BsiSI CCGG 2 cut(s) 6, 763
BslI CCNNNNNNNGG 3 cut(s) 65, 418, 435
BsmI GAATGC 1 cut(s) 310
BsnI GGCC 2 cut(s) 216, 395
BsoBI CYCGRG 2 cut(s) 444, 762
Bsp1286I GDGCHC 1 cut(s) 812
Bsp143I GATC 1 cut(s) 490
BspACI CCGC 1 cut(s) 734
BspANI GGCC 2 cut(s) 216, 395
BspCNI CTCAG 2 cut(s) 229, 642
BspDI ATCGAT 1 cut(s) 177
BspHI TCATGA 1 cut(s) 493
BspMAI CTGCAG 1 cut(s) 388
BspQI GCTCTTC 1 cut(s) 800
BsrFI RCCGGY 1 cut(s) 5
BssAI RCCGGY 1 cut(s) 5
BssECI CCNNGG 3 cut(s) 554, 566, 762
BssMI GATC 1 cut(s) 490
Bst2UI CCWGG 1 cut(s) 555
Bst4CI ACNGT 1 cut(s) 165
Bst6I CTCTTC 2 cut(s) 783, 800
BstDEI CTNAG 2 cut(s) 237, 629
BstDSI CCRYGG 1 cut(s) 566
BstF5I GGATG 2 cut(s) 565, 763
BstKTI GATC 1 cut(s) 493
BstMBI GATC 1 cut(s) 490
BstMWI GCNNNNNNNGC 3 cut(s) 222, 392, 767
BstNI CCWGG 1 cut(s) 555
BstSCI CCNGG 3 cut(s) 553, 761, 762
BstSFI CTRYAG 1 cut(s) 384
BstV1I GCAGC 2 cut(s) 779, 782
BstV2I GAAGAC 2 cut(s) 153, 677
Bsu15I ATCGAT 1 cut(s) 177
BsuRI GGCC 2 cut(s) 216, 395
BsuTUI ATCGAT 1 cut(s) 177
BtgI CCRYGG 1 cut(s) 566
BtsCI GGATG 2 cut(s) 565, 763
BtsI GCAGTG 1 cut(s) 801
BtsIMutI CAGTG 1 cut(s) 801
CaiI CAGNNNCTG 3 cut(s) 59, 281, 418
CciI TCATGA 1 cut(s) 493
Cfr10I RCCGGY 1 cut(s) 5
Cfr13I GGNCC 1 cut(s) 47
Cfr9I CCCGGG 1 cut(s) 762
ClaI ATCGAT 1 cut(s) 177
Csp6I GTAC 1 cut(s) 241
CviAII CATG 6 cut(s) 104, 137, 185, 227, 494, 644
CviQI GTAC 1 cut(s) 241
DdeI CTNAG 2 cut(s) 237, 629
DpnI GATC 1 cut(s) 492
DpnII GATC 1 cut(s) 490
EaeI YGGCCR 2 cut(s) 214, 393
Eam1104I CTCTTC 2 cut(s) 783, 800
EarI CTCTTC 2 cut(s) 783, 800
Ecl136II GAGCTC 1 cut(s) 810
Eco24I GRGCYC 1 cut(s) 812
Eco47I GGWCC 1 cut(s) 47
Eco53kI GAGCTC 1 cut(s) 810
Eco88I CYCGRG 2 cut(s) 444, 762
EcoICRI GAGCTC 1 cut(s) 810
EcoRII CCWGG 1 cut(s) 553
EcoT38I GRGCYC 1 cut(s) 812
FaeI CATG 6 cut(s) 107, 140, 188, 230, 497, 647
FatI CATG 6 cut(s) 103, 136, 184, 226, 493, 643
FbaI TGATCA 1 cut(s) 490
Fnu4HI GCNGC 2 cut(s) 768, 771
FokI GGATG 2 cut(s) 572, 770
FriOI GRGCYC 1 cut(s) 812
Fsp4HI GCNGC 2 cut(s) 768, 771
FspBI CTAG 2 cut(s) 191, 501
GluI GCNGC 2 cut(s) 768, 771
GsuI CTGGAG 1 cut(s) 368
HaeIII GGCC 2 cut(s) 216, 395
HapII CCGG 2 cut(s) 6, 763
Hin1II CATG 6 cut(s) 107, 140, 188, 230, 497, 647
HinfI GANTC 3 cut(s) 62, 440, 737
HpaII CCGG 2 cut(s) 6, 763
HphI GGTGA 2 cut(s) 617, 724
Hpy188I TCNGA 3 cut(s) 55, 637, 814
Hpy188III TCNNGA 7 cut(s) 66, 236, 289, 313, 347, 444, 494
HpyAV CCTTC 3 cut(s) 25, 346, 703
HpyCH4III ACNGT 1 cut(s) 165
HpyCH4V TGCA 5 cut(s) 161, 203, 247, 308, 386
HpyF10VI GCNNNNNNNGC 3 cut(s) 222, 392, 767
HpyF3I CTNAG 2 cut(s) 237, 629
Hsp92II CATG 6 cut(s) 107, 140, 188, 230, 497, 647
Ksp22I TGATCA 1 cut(s) 490
Kzo9I GATC 1 cut(s) 490
LguI GCTCTTC 1 cut(s) 800
Lsp1109I GCAGC 2 cut(s) 779, 782
LweI GCATC 1 cut(s) 748
MaeI CTAG 2 cut(s) 191, 501
MaeIII GTNAC 5 cut(s) 87, 328, 388, 458, 605
MalI GATC 1 cut(s) 492
MboI GATC 1 cut(s) 490
MboII GAAGA 6 cut(s) 158, 527, 631, 682, 800, 817
MhlI GDGCHC 1 cut(s) 812
MlsI TGGCCA 1 cut(s) 216
MluCI AATT 5 cut(s) 15, 204, 231, 402, 519
MluNI TGGCCA 1 cut(s) 216
MlyI GAGTC 1 cut(s) 56
MnlI CCTC 3 cut(s) 524, 651, 784
Mox20I TGGCCA 1 cut(s) 216
MscI TGGCCA 1 cut(s) 216
MseI TTAA 6 cut(s) 168, 221, 261, 272, 401, 659
Msp20I TGGCCA 1 cut(s) 216
MspI CCGG 2 cut(s) 6, 763
MspR9I CCNGG 3 cut(s) 555, 763, 764
Mva1269I GAATGC 1 cut(s) 310
MvaI CCWGG 1 cut(s) 555
MwoI GCNNNNNNNGC 3 cut(s) 222, 392, 767
NciI CCSGG 2 cut(s) 763, 764
NdeII GATC 1 cut(s) 490
NlaIII CATG 6 cut(s) 107, 140, 188, 230, 497, 647
NmuCI GTSAC 2 cut(s) 87, 605
PaeR7I CTCGAG 1 cut(s) 444
PagI TCATGA 1 cut(s) 493
PciSI GCTCTTC 1 cut(s) 800
PctI GAATGC 1 cut(s) 310
PfeI GAWTC 2 cut(s) 440, 737
PflMI CCANNNNNTGG 1 cut(s) 418
PkrI GCNGC 2 cut(s) 769, 772
PleI GAGTC 1 cut(s) 56
PpsI GAGTC 1 cut(s) 56
PshBI ATTAAT 1 cut(s) 401
Psp124BI GAGCTC 1 cut(s) 812
Psp6I CCWGG 1 cut(s) 553
PspGI CCWGG 1 cut(s) 553
PspPI GGNCC 1 cut(s) 47
PstI CTGCAG 1 cut(s) 388
PstNI CAGNNNCTG 3 cut(s) 59, 281, 418
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
SacI GAGCTC 1 cut(s) 812
SapI GCTCTTC 1 cut(s) 800
SaqAI TTAA 6 cut(s) 168, 221, 261, 272, 401, 659
SatI GCNGC 2 cut(s) 768, 771
Sau3AI GATC 1 cut(s) 490
Sau96I GGNCC 1 cut(s) 47
ScaI AGTACT 1 cut(s) 242
SchI GAGTC 1 cut(s) 56
ScrFI CCNGG 3 cut(s) 555, 763, 764
SduI GDGCHC 1 cut(s) 812
SfaNI GCATC 1 cut(s) 748
SfcI CTRYAG 1 cut(s) 384
Sfr274I CTCGAG 1 cut(s) 444
SinI GGWCC 1 cut(s) 47
SlaI CTCGAG 1 cut(s) 444
SmaI CCCGGG 1 cut(s) 764
SmlI CTYRAG 1 cut(s) 444
SmoI CTYRAG 1 cut(s) 444
SrfI GCCCGGGC 1 cut(s) 764
Sse9I AATT 5 cut(s) 15, 204, 231, 402, 519
SsiI CCGC 1 cut(s) 734
SspMI CTAG 2 cut(s) 191, 501
SstI GAGCTC 1 cut(s) 812
StyD4I CCNGG 3 cut(s) 553, 761, 762
TaaI ACNGT 1 cut(s) 165
TaqI TCGA 2 cut(s) 177, 445
TasI AATT 5 cut(s) 15, 204, 231, 402, 519
TatI WGTACW 1 cut(s) 240
TfiI GAWTC 2 cut(s) 440, 737
Tru1I TTAA 6 cut(s) 168, 221, 261, 272, 401, 659
Tru9I TTAA 6 cut(s) 168, 221, 261, 272, 401, 659
TscAI CASTG 1 cut(s) 801
TseFI GTSAC 2 cut(s) 87, 605
TseI GCWGC 2 cut(s) 767, 770
Tsp45I GTSAC 2 cut(s) 87, 605
TspDTI ATGAA 3 cut(s) 44, 243, 670
TspGWI ACGGA 2 cut(s) 314, 800
TspMI CCCGGG 1 cut(s) 762
TspRI CASTG 1 cut(s) 801
Van91I CCANNNNNTGG 1 cut(s) 418
VpaK11BI GGWCC 1 cut(s) 47
VspI ATTAAT 1 cut(s) 401
XapI RAATTY 2 cut(s) 15, 231
XcmI CCANNNNNNNNNTGG 1 cut(s) 101
XhoI CTCGAG 1 cut(s) 444
XmaI CCCGGG 1 cut(s) 762
XspI CTAG 2 cut(s) 191, 501
ZrmI AGTACT 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.