Rh5DG233100

protein phosphatase 2C 39

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0011687
Physical Location & Seq
Forward (+)
26561491 .. 26562841
1351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG233100.1

Sequence Viewer

Length: 708 bp
ATGGAAGACTATGTTGTTGCACAGTTTAAGCAAATTGAAGACCATGAGCTAGGACTATTTGCAATCTTTGATGGGCATTTGAGTCATGAAATTCCTGAATACTTGCAGTCTAATCTCTTCAATAATATCTTAAAAGAGCCCGAATTCTGGGAAGAAACTGAGGATGCAGTCAGGAAAGCATATCGAATAACTGATACTAACATTCTGGAGAAAGCAGTCGATTTGGGCAAAGGGGGCTCAACTGCTGTTACTGCCATATTAATTGACTGTCGCAAGCTTGTGGTAGCCAATGTTGGGGATTCTCGTGCTATTATCTGCAAGAATGGTGTGGCTAAGCAGCTATCTGTTGATCATGAACCGAGCACAGAGAGAGAGCAAATCGAGAACAGAGGTGGTTTTGTATCAAACTTTCCAGGGGATGTACCACGTGTTGATGGGCAGTTGGCTGTAGCACGGGCATTCGGTGACAAGAGCTTGAAGAAACATTTAAGTTCTGAACCTTTTGTGATGTCGGAGACGATAGATGATGAAACAGAGTTTGCTGTCTTAGCAAGTGATGGACTGTGGAAGGTGATGACAAACCAAGAAGTTGTGGATGCCATAAAAAATATTAAGGATGCTCGGGCAGCAGCAAAGCATCTTACTGAAGAGGCAGTCAATAGGAAGAGCTCGGACGACATTTCCTGTGTAGTTGTAAGATTTCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

235

Amino Acids

26.16

Weight (kDa)

4.95

Isoelectric Point (pI)

43.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 14 - 227 8.8e-55 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011687)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15260 AT3G15260
fragaria_vesca FvH4_3g19640 FvH4_3g19640
malus_domestica MD03G1230700.v1.1 MD11G1251900.v1.1
prunus_persica Prupe.4G177100_v2.0.a1
pyrus_communis pycom03g17840 pycom11g22340
rosa_chinensis RchiOBHm_Chr5g0032841
rosa_laevigata RLG00000033433
rosa_multiflora Rmu_sc0000986.1_g000035
rosa_roxburghii Rroxscaffold_1G00047190
rosa_rugosa Rorug05G0134100
rosa_samantha Rh5AG227000 Rh5BG228300 Rh5CG256100 Rh5DG233100
rosa_wichuraiana Rw5G020810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 90, 143
AcuI CTGAAG 1 cut(s) 666
AcvI CACGTG 1 cut(s) 428
AfaI GTAC 1 cut(s) 423
AfiI CCNNNNNNNGG 2 cut(s) 147, 294
AflIII ACRYGT 1 cut(s) 427
AgsI TTSAA 3 cut(s) 38, 121, 478
AjnI CCWGG 1 cut(s) 412
AluBI AGCT 5 cut(s) 49, 277, 340, 474, 669
AluI AGCT 5 cut(s) 49, 277, 340, 474, 669
Alw21I GWGCWC 2 cut(s) 365, 671
Alw26I GTCTC 1 cut(s) 509
Ama87I CYCGRG 1 cut(s) 621
ApeKI GCWGC 3 cut(s) 337, 626, 629
ApoI RAATTY 2 cut(s) 90, 143
AseI ATTAAT 1 cut(s) 260
AsuHPI GGTGA 2 cut(s) 476, 583
AvaI CYCGRG 1 cut(s) 621
BanII GRGCYC 3 cut(s) 141, 239, 671
BauI CACGAG 1 cut(s) 303
BbrPI CACGTG 1 cut(s) 428
BbsI GAAGAC 2 cut(s) 12, 45
Bbv12I GWGCWC 2 cut(s) 365, 671
BbvI GCAGC 3 cut(s) 349, 638, 641
BccI CCATC 3 cut(s) 65, 428, 551
BciT130I CCWGG 1 cut(s) 414
BclI TGATCA 1 cut(s) 349
BcoDI GTCTC 1 cut(s) 509
BfaI CTAG 1 cut(s) 50
BfmI CTRYAG 1 cut(s) 447
BisI GCNGC 3 cut(s) 338, 627, 630
BlpI GCTNAGC 1 cut(s) 333
BlsI GCNGC 3 cut(s) 339, 628, 631
Bme1390I CCNGG 1 cut(s) 414
BmeT110I CYCGRG 1 cut(s) 621
BmrFI CCNGG 1 cut(s) 414
BmsI GCATC 4 cut(s) 154, 586, 607, 646
BpiI GAAGAC 2 cut(s) 12, 45
BpmI CTGGAG 1 cut(s) 227
Bpu1102I GCTNAGC 1 cut(s) 333
BsaAI YACGTR 1 cut(s) 428
BsaJI CCNNGG 1 cut(s) 413
Bsc4I CCNNNNNNNGG 2 cut(s) 147, 294
BseBI CCWGG 1 cut(s) 414
BseDI CCNNGG 1 cut(s) 413
BseGI GGATG 4 cut(s) 169, 424, 601, 622
BseLI CCNNNNNNNGG 2 cut(s) 147, 294
BseMII CTCAG 1 cut(s) 150
BseXI GCAGC 3 cut(s) 349, 638, 641
BsiHKAI GWGCWC 2 cut(s) 365, 671
BsiHKCI CYCGRG 1 cut(s) 621
BslI CCNNNNNNNGG 2 cut(s) 147, 294
BsmAI GTCTC 1 cut(s) 509
BsmBI CGTCTC 1 cut(s) 509
BsmI GAATGC 1 cut(s) 458
BsoBI CYCGRG 1 cut(s) 621
Bsp1286I GDGCHC 4 cut(s) 141, 239, 365, 671
Bsp143I GATC 1 cut(s) 349
Bsp1720I GCTNAGC 1 cut(s) 333
BspCNI CTCAG 1 cut(s) 151
BspHI TCATGA 2 cut(s) 85, 352
BspQI GCTCTTC 1 cut(s) 659
BssECI CCNNGG 1 cut(s) 413
BssMI GATC 1 cut(s) 349
BssSI CACGAG 1 cut(s) 303
Bst2BI CACGAG 1 cut(s) 303
Bst2UI CCWGG 1 cut(s) 414
Bst4CI ACNGT 3 cut(s) 24, 269, 564
Bst6I CTCTTC 3 cut(s) 122, 642, 659
BstBAI YACGTR 1 cut(s) 428
BstC8I GCNNGC 1 cut(s) 275
BstDEI CTNAG 3 cut(s) 159, 333, 547
BstF5I GGATG 4 cut(s) 169, 424, 601, 622
BstKTI GATC 1 cut(s) 352
BstMAI GTCTC 1 cut(s) 509
BstMBI GATC 1 cut(s) 349
BstMWI GCNNNNNNNGC 4 cut(s) 234, 251, 548, 626
BstNI CCWGG 1 cut(s) 414
BstSCI CCNGG 1 cut(s) 412
BstSFI CTRYAG 1 cut(s) 447
BstV1I GCAGC 3 cut(s) 349, 638, 641
BstV2I GAAGAC 2 cut(s) 12, 45
BtsCI GGATG 4 cut(s) 169, 424, 601, 622
Cac8I GCNNGC 1 cut(s) 275
CciI TCATGA 2 cut(s) 85, 352
Csp6I GTAC 1 cut(s) 422
CviAII CATG 3 cut(s) 44, 86, 353
CviQI GTAC 1 cut(s) 422
DdeI CTNAG 3 cut(s) 159, 333, 547
DpnI GATC 1 cut(s) 351
DpnII GATC 1 cut(s) 349
Eam1104I CTCTTC 3 cut(s) 122, 642, 659
EarI CTCTTC 3 cut(s) 122, 642, 659
Ecl136II GAGCTC 1 cut(s) 669
Eco24I GRGCYC 3 cut(s) 141, 239, 671
Eco53kI GAGCTC 1 cut(s) 669
Eco57I CTGAAG 1 cut(s) 666
Eco72I CACGTG 1 cut(s) 428
Eco88I CYCGRG 1 cut(s) 621
EcoICRI GAGCTC 1 cut(s) 669
EcoRI GAATTC 1 cut(s) 143
EcoRII CCWGG 1 cut(s) 412
EcoT38I GRGCYC 3 cut(s) 141, 239, 671
Esp3I CGTCTC 1 cut(s) 509
FaeI CATG 3 cut(s) 47, 89, 356
FaiI YATR 7 cut(s) 12, 45, 87, 181, 257, 354, 602
FatI CATG 3 cut(s) 43, 85, 352
FbaI TGATCA 1 cut(s) 349
Fnu4HI GCNGC 3 cut(s) 338, 627, 630
FokI GGATG 4 cut(s) 176, 431, 608, 629
FriOI GRGCYC 3 cut(s) 141, 239, 671
Fsp4HI GCNGC 3 cut(s) 338, 627, 630
FspBI CTAG 1 cut(s) 50
GluI GCNGC 3 cut(s) 338, 627, 630
GsuI CTGGAG 1 cut(s) 227
Hin1II CATG 3 cut(s) 47, 89, 356
HindIII AAGCTT 1 cut(s) 275
HinfI GANTC 2 cut(s) 82, 299
HphI GGTGA 2 cut(s) 476, 583
Hpy188I TCNGA 3 cut(s) 496, 514, 673
Hpy188III TCNNGA 6 cut(s) 86, 95, 172, 206, 353, 382
HpyAV CCTTC 1 cut(s) 562
HpyCH4III ACNGT 3 cut(s) 24, 269, 564
HpyCH4IV ACGT 1 cut(s) 427
HpyCH4V TGCA 5 cut(s) 20, 62, 106, 167, 318
HpyF10VI GCNNNNNNNGC 4 cut(s) 234, 251, 548, 626
HpyF3I CTNAG 3 cut(s) 159, 333, 547
HpySE526I ACGT 1 cut(s) 427
Hsp92II CATG 3 cut(s) 47, 89, 356
Ksp22I TGATCA 1 cut(s) 349
Kzo9I GATC 1 cut(s) 349
LguI GCTCTTC 1 cut(s) 659
LpnPI CCDG 7 cut(s) 108, 133, 157, 191, 399, 426, 697
Lsp1109I GCAGC 3 cut(s) 349, 638, 641
LweI GCATC 4 cut(s) 154, 586, 607, 646
MaeI CTAG 1 cut(s) 50
MaeII ACGT 1 cut(s) 427
MaeIII GTNAC 2 cut(s) 247, 464
MalI GATC 1 cut(s) 351
MboI GATC 1 cut(s) 349
MboII GAAGA 7 cut(s) 17, 50, 109, 164, 490, 659, 676
MhlI GDGCHC 4 cut(s) 141, 239, 365, 671
MluCI AATT 4 cut(s) 33, 90, 143, 261
MlyI GAGTC 1 cut(s) 91
MmeI TCCRAC 1 cut(s) 492
MnlI CCTC 3 cut(s) 154, 383, 643
MseI TTAA 5 cut(s) 27, 131, 260, 488, 612
MspR9I CCNGG 1 cut(s) 414
Mva1269I GAATGC 1 cut(s) 458
MvaI CCWGG 1 cut(s) 414
MwoI GCNNNNNNNGC 4 cut(s) 234, 251, 548, 626
NdeII GATC 1 cut(s) 349
NlaIII CATG 3 cut(s) 47, 89, 356
NmuCI GTSAC 1 cut(s) 464
PagI TCATGA 2 cut(s) 85, 352
PciSI GCTCTTC 1 cut(s) 659
PctI GAATGC 1 cut(s) 458
PfeI GAWTC 1 cut(s) 299
PkrI GCNGC 3 cut(s) 339, 628, 631
PleI GAGTC 1 cut(s) 90
PmaCI CACGTG 1 cut(s) 428
PmlI CACGTG 1 cut(s) 428
PpsI GAGTC 1 cut(s) 90
Ppu21I YACGTR 1 cut(s) 428
PshBI ATTAAT 1 cut(s) 260
Psp124BI GAGCTC 1 cut(s) 671
Psp6I CCWGG 1 cut(s) 412
PspCI CACGTG 1 cut(s) 428
PspGI CCWGG 1 cut(s) 412
RsaI GTAC 1 cut(s) 423
RsaNI GTAC 1 cut(s) 422
SacI GAGCTC 1 cut(s) 671
SapI GCTCTTC 1 cut(s) 659
SaqAI TTAA 5 cut(s) 27, 131, 260, 488, 612
SatI GCNGC 3 cut(s) 338, 627, 630
Sau3AI GATC 1 cut(s) 349
SchI GAGTC 1 cut(s) 91
ScrFI CCNGG 1 cut(s) 414
SduI GDGCHC 4 cut(s) 141, 239, 365, 671
SetI ASST 9 cut(s) 51, 279, 342, 394, 430, 476, 502, 573, 671
SfaNI GCATC 4 cut(s) 154, 586, 607, 646
SfcI CTRYAG 1 cut(s) 447
Sse9I AATT 4 cut(s) 33, 90, 143, 261
SspI AATATT 1 cut(s) 610
SspMI CTAG 1 cut(s) 50
SstI GAGCTC 1 cut(s) 671
StyD4I CCNGG 1 cut(s) 412
TaaI ACNGT 3 cut(s) 24, 269, 564
TaiI ACGT 1 cut(s) 430
TaqI TCGA 3 cut(s) 184, 219, 381
TasI AATT 4 cut(s) 33, 90, 143, 261
TfiI GAWTC 1 cut(s) 299
Tru1I TTAA 5 cut(s) 27, 131, 260, 488, 612
Tru9I TTAA 5 cut(s) 27, 131, 260, 488, 612
TseFI GTSAC 1 cut(s) 464
TseI GCWGC 3 cut(s) 337, 626, 629
Tsp45I GTSAC 1 cut(s) 464
TspDTI ATGAA 3 cut(s) 102, 369, 543
VspI ATTAAT 1 cut(s) 260
XapI RAATTY 2 cut(s) 90, 143
XspI CTAG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.