AT3G15710

signal peptidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0009052
Physical Location & Seq
Reverse (-)
5323262 .. 5324966
1705 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G15710.1

Sequence Viewer

Length: 543 bp
ATGGGTTTCATCGGAGAAACTGTAGATTCCATCAAATCTATCAAGATCCGTCAAGTTCTCACTCAGGCTATCACTCTCGGTATGATCGTTACATCTGCATTGATAATTTGGAAGGCATTGATATGTGTCACTGGCAGTGAATCACCAGTGGTTGTTGTTCTCTCTGAAAGTATGGAACCTGGCTTTCAGAGAGGAGATATATTGTTCTTGCGGATGACTGATGAGCCTATTCGAGCAGGCGAGATTGTTGTGTTCAGTGTTGATGGTCGTGAAATTCCCATTGTTCATCGAGCAATCAAAGTTCATGAGAGAGGAGATACTAAAGCAGTTGATGTTCTAACAAAAGGTGACAACAATGACATTGATGACATTGGTCTCTATGCTGAAGGACAGCTTTGGCTTCACAGGCATCATATCATGGGCAGAGCTGTTGGATTCTTGCCTTATGTTGGATGGGTTACTATTATCATGACAGAAAAGCCTATCATCAAGTATATACTCATTGGTGCATTGGGTTTGCTCGTTATAACATCGAAAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03060 map03060
Pfam Domains
Protein Families
Peptidase_S24

Protein Analysis

180

Amino Acids

19.85

Weight (kDa)

5.95

Isoelectric Point (pI)

21.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S24 PF00717 37 - 143 1.7e-09 Peptidase S24-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 527
AciI CCGC 1 cut(s) 211
AclWI GGATC 1 cut(s) 40
AcsI RAATTY 1 cut(s) 273
AcuI CTGAAG 1 cut(s) 405
AfiI CCNNNNNNNGG 1 cut(s) 449
AjnI CCWGG 1 cut(s) 178
AluBI AGCT 2 cut(s) 394, 428
AluI AGCT 2 cut(s) 394, 428
Alw26I GTCTC 1 cut(s) 380
AlwI GGATC 1 cut(s) 40
ApoI RAATTY 1 cut(s) 273
AsuHPI GGTGA 2 cut(s) 135, 359
BccI CCATC 3 cut(s) 38, 257, 447
BciT130I CCWGG 1 cut(s) 180
BcoDI GTCTC 1 cut(s) 380
BfmI CTRYAG 1 cut(s) 21
Bme1390I CCNGG 1 cut(s) 180
BmiI GGNNCC 1 cut(s) 177
BmrFI CCNGG 1 cut(s) 180
BmsI GCATC 1 cut(s) 418
BoxI GACNNNNGTC 1 cut(s) 372
BsaI GGTCTC 1 cut(s) 380
BsaXI ACNNNNNCTCC 2 cut(s) 6, 36
Bsc4I CCNNNNNNNGG 1 cut(s) 449
Bse1I ACTGG 2 cut(s) 136, 146
BseBI CCWGG 1 cut(s) 180
BseGI GGATG 2 cut(s) 219, 458
BseLI CCNNNNNNNGG 1 cut(s) 449
BseMII CTCAG 1 cut(s) 77
BseNI ACTGG 2 cut(s) 136, 146
BseRI GAGGAG 2 cut(s) 207, 327
BslI CCNNNNNNNGG 1 cut(s) 449
BsmAI GTCTC 1 cut(s) 380
Bso31I GGTCTC 1 cut(s) 380
Bsp143I GATC 2 cut(s) 45, 84
BspACI CCGC 1 cut(s) 211
BspCNI CTCAG 1 cut(s) 76
BspHI TCATGA 2 cut(s) 304, 468
BspLI GGNNCC 1 cut(s) 177
BspPI GGATC 1 cut(s) 40
BspTNI GGTCTC 1 cut(s) 380
BsrI ACTGG 2 cut(s) 136, 146
BssMI GATC 2 cut(s) 45, 84
Bst2UI CCWGG 1 cut(s) 180
Bst4CI ACNGT 1 cut(s) 22
BstC8I GCNNGC 1 cut(s) 238
BstDEI CTNAG 1 cut(s) 63
BstF5I GGATG 2 cut(s) 219, 458
BstKTI GATC 2 cut(s) 48, 87
BstMAI GTCTC 1 cut(s) 380
BstMBI GATC 2 cut(s) 45, 84
BstMWI GCNNNNNNNGC 1 cut(s) 406
BstNI CCWGG 1 cut(s) 180
BstPAI GACNNNNGTC 1 cut(s) 372
BstSCI CCNGG 1 cut(s) 178
BstSFI CTRYAG 1 cut(s) 21
BstX2I RGATCY 1 cut(s) 45
BstYI RGATCY 1 cut(s) 45
BtsCI GGATG 2 cut(s) 219, 458
BtsI GCAGTG 1 cut(s) 142
BtsIMutI CAGTG 4 cut(s) 129, 142, 153, 262
Cac8I GCNNGC 1 cut(s) 238
CciI TCATGA 2 cut(s) 304, 468
CviAII CATG 3 cut(s) 305, 418, 469
CviJI RGCY 7 cut(s) 68, 183, 226, 394, 400, 428, 481
CviKI_1 RGCY 7 cut(s) 68, 183, 226, 394, 400, 428, 481
DdeI CTNAG 1 cut(s) 63
DpnI GATC 2 cut(s) 47, 86
DpnII GATC 2 cut(s) 45, 84
Eco31I GGTCTC 1 cut(s) 380
Eco57I CTGAAG 1 cut(s) 405
EcoRII CCWGG 1 cut(s) 178
FaeI CATG 3 cut(s) 308, 421, 472
FalI AAGNNNNNCTT 2 cut(s) 378, 410
FatI CATG 3 cut(s) 304, 417, 468
FokI GGATG 2 cut(s) 226, 465
Hin1II CATG 3 cut(s) 308, 421, 472
HinfI GANTC 3 cut(s) 26, 140, 435
HphI GGTGA 2 cut(s) 135, 359
Hpy188I TCNGA 3 cut(s) 14, 166, 189
Hpy188III TCNNGA 4 cut(s) 43, 269, 305, 469
HpyAV CCTTC 2 cut(s) 106, 380
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4V TGCA 2 cut(s) 98, 509
HpyF10VI GCNNNNNNNGC 1 cut(s) 406
HpyF3I CTNAG 1 cut(s) 63
Hsp92II CATG 3 cut(s) 308, 421, 472
Kzo9I GATC 2 cut(s) 45, 84
LpnPI CCDG 7 cut(s) 50, 117, 159, 165, 192, 222, 391
LweI GCATC 1 cut(s) 418
MaeIII GTNAC 4 cut(s) 88, 127, 347, 457
MalI GATC 2 cut(s) 47, 86
MboI GATC 2 cut(s) 45, 84
MflI RGATCY 1 cut(s) 45
MluCI AATT 2 cut(s) 105, 273
MmeI TCCRAC 2 cut(s) 412, 430
MnlI CCTC 2 cut(s) 185, 305
MslI CAYNNNNRTG 1 cut(s) 121
MspR9I CCNGG 1 cut(s) 180
MvaI CCWGG 1 cut(s) 180
MwoI GCNNNNNNNGC 1 cut(s) 406
NdeII GATC 2 cut(s) 45, 84
NlaIII CATG 3 cut(s) 308, 421, 472
NlaIV GGNNCC 1 cut(s) 177
NmuCI GTSAC 2 cut(s) 127, 347
PagI TCATGA 2 cut(s) 304, 468
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PfeI GAWTC 3 cut(s) 26, 140, 435
PshAI GACNNNNGTC 1 cut(s) 372
PsiI TTATAA 1 cut(s) 527
Psp6I CCWGG 1 cut(s) 178
PspGI CCWGG 1 cut(s) 178
PspN4I GGNNCC 1 cut(s) 177
PsuI RGATCY 1 cut(s) 45
RseI CAYNNNNRTG 1 cut(s) 121
Sau3AI GATC 2 cut(s) 45, 84
ScrFI CCNGG 1 cut(s) 180
SetI ASST 4 cut(s) 181, 349, 396, 430
SfaNI GCATC 1 cut(s) 418
SfcI CTRYAG 1 cut(s) 21
SmiMI CAYNNNNRTG 1 cut(s) 121
Sse9I AATT 2 cut(s) 105, 273
SsiI CCGC 1 cut(s) 211
StyD4I CCNGG 1 cut(s) 178
TaaI ACNGT 1 cut(s) 22
TaqI TCGA 3 cut(s) 232, 289, 533
TasI AATT 2 cut(s) 105, 273
TfiI GAWTC 3 cut(s) 26, 140, 435
TscAI CASTG 4 cut(s) 136, 142, 153, 262
TseFI GTSAC 2 cut(s) 127, 347
Tsp45I GTSAC 2 cut(s) 127, 347
TspDTI ATGAA 2 cut(s) 275, 293
TspGWI ACGGA 1 cut(s) 38
TspRI CASTG 4 cut(s) 136, 142, 153, 262
XapI RAATTY 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.