Rroxscaffold_2G00152400

Signal peptidase complex catalytic subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0009052
Physical Location & Seq
Reverse (-)
89368535 .. 89372302
3768 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00152400.1

Sequence Viewer

Length: 588 bp
ATGGGTTGGTTTGGGGATACCGTGGATTCCATCAAGTCCATTCAGATCAGGCAAGCTCTCTCCCAAGCCGTCAGTCTCGGCTTGATTGTCACTTCGGCGCTGATAATATGGAAAGGGTTGATGTTGATGACTGGGAGTGAGTCACCTGTGGTGGTTGTGCTCTCTGAAAGCATGGAACCTGGCTTTGCTAGGGGTGACATTTTGTTCTTGCATATGAGCAAGGATCCTATTCGTGCAGGAGAAATTGTCGTGTTTAACGTGGATGTGCACGAGCGGAAAGATACTGGAGAAGATTATATCCTCACAAAAGGAGACAATAATTCTGAAGATGATAGAATCCTTTATGCTCCGGGCCAGCGTTGGTTGCAAAAACACCATATCATGGGGAGAGCTGCTGGGTATGTCTTTTATCTTGTTATACTTTGTTCTGAGCTGTTAGGTGAAGCTTCAATAGCAAGCTGTAACGTAGATGAACAACTGTTTTTGCCTTACGTTGGTTGGGTGACAATTATCATGACTGAAAAACCTATAATTAAGTACATTATCATAGGAGCGCTGGGATTGCTAGTCATTACGTCGAAGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03060 map03060
Pfam Domains
Protein Families
Peptidase_S24

Protein Analysis

195

Amino Acids

21.57

Weight (kDa)

5.06

Isoelectric Point (pI)

36.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S24 PF00717 38 - 89 4.1e-07 Peptidase S24-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 382
AccBSI CCGCTC 1 cut(s) 274
AciI CCGC 1 cut(s) 274
AclWI GGATC 2 cut(s) 218, 231
AcuI CTGAAG 1 cut(s) 345
AfaI GTAC 1 cut(s) 539
AfeI AGCGCT 1 cut(s) 555
AfiI CCNNNNNNNGG 2 cut(s) 382, 494
AgsI TTSAA 1 cut(s) 450
AjnI CCWGG 1 cut(s) 178
AluBI AGCT 5 cut(s) 56, 392, 433, 446, 459
AluI AGCT 5 cut(s) 56, 392, 433, 446, 459
Alw21I GWGCWC 2 cut(s) 162, 270
Alw26I GTCTC 2 cut(s) 80, 306
Alw44I GTGCAC 1 cut(s) 266
AlwI GGATC 2 cut(s) 218, 231
Aor51HI AGCGCT 1 cut(s) 555
AoxI GGCC 1 cut(s) 352
ApaLI GTGCAC 1 cut(s) 266
ApeKI GCWGC 1 cut(s) 392
AspLEI GCGC 2 cut(s) 100, 556
AspS9I GGNCC 1 cut(s) 352
AsuC2I CCSGG 1 cut(s) 351
AsuHPI GGTGA 4 cut(s) 135, 206, 452, 514
BaeGI GKGCMC 1 cut(s) 270
BamHI GGATCC 1 cut(s) 223
BauI CACGAG 1 cut(s) 269
Bbv12I GWGCWC 2 cut(s) 162, 270
BbvI GCAGC 1 cut(s) 379
BccI CCATC 1 cut(s) 38
BceAI ACGGC 1 cut(s) 53
BciT130I CCWGG 1 cut(s) 180
BciVI GTATCC 1 cut(s) 10
BcnI CCSGG 1 cut(s) 351
BcoDI GTCTC 2 cut(s) 80, 306
BfaI CTAG 2 cut(s) 189, 566
BfoI RGCGCY 2 cut(s) 101, 557
BfuI GTATCC 1 cut(s) 10
BisI GCNGC 1 cut(s) 393
BlsI GCNGC 1 cut(s) 394
Bme1390I CCNGG 2 cut(s) 180, 351
BmgT120I GGNCC 1 cut(s) 352
BmiI GGNNCC 2 cut(s) 177, 225
BmrFI CCNGG 2 cut(s) 180, 351
BmrI ACTGGG 1 cut(s) 141
BmuI ACTGGG 1 cut(s) 141
BpmI CTGGAG 1 cut(s) 306
BpuMI CCSGG 1 cut(s) 351
BsaJI CCNNGG 1 cut(s) 21
BsaXI ACNNNNNCTCC 2 cut(s) 231, 261
Bsc4I CCNNNNNNNGG 2 cut(s) 382, 494
Bse1I ACTGG 2 cut(s) 136, 289
BseBI CCWGG 1 cut(s) 180
BseDI CCNNGG 1 cut(s) 21
BseGI GGATG 1 cut(s) 268
BseLI CCNNNNNNNGG 2 cut(s) 382, 494
BseMII CTCAG 1 cut(s) 420
BseNI ACTGG 2 cut(s) 136, 289
BseSI GKGCMC 1 cut(s) 270
BseXI GCAGC 1 cut(s) 379
BseYI CCCAGC 2 cut(s) 395, 556
BsgI GTGCAG 1 cut(s) 255
BshFI GGCC 1 cut(s) 354
BsiHKAI GWGCWC 2 cut(s) 162, 270
BsiSI CCGG 1 cut(s) 350
BslI CCNNNNNNNGG 2 cut(s) 382, 494
BsmAI GTCTC 2 cut(s) 80, 306
BsnI GGCC 1 cut(s) 354
Bsp1286I GDGCHC 2 cut(s) 162, 270
Bsp143I GATC 2 cut(s) 45, 223
BspACI CCGC 1 cut(s) 274
BspANI GGCC 1 cut(s) 354
BspCNI CTCAG 1 cut(s) 421
BspHI TCATGA 1 cut(s) 513
BspLI GGNNCC 2 cut(s) 177, 225
BspPI GGATC 2 cut(s) 218, 231
BsrBI CCGCTC 1 cut(s) 274
BsrI ACTGG 2 cut(s) 136, 289
BssECI CCNNGG 1 cut(s) 21
BssMI GATC 2 cut(s) 45, 223
BssSI CACGAG 1 cut(s) 269
Bst2BI CACGAG 1 cut(s) 269
Bst2UI CCWGG 1 cut(s) 180
Bst4CI ACNGT 2 cut(s) 22, 480
BstC8I GCNNGC 3 cut(s) 54, 356, 457
BstDEI CTNAG 1 cut(s) 429
BstDSI CCRYGG 1 cut(s) 21
BstF5I GGATG 1 cut(s) 268
BstH2I RGCGCY 2 cut(s) 101, 557
BstHHI GCGC 2 cut(s) 100, 556
BstKTI GATC 2 cut(s) 48, 226
BstMAI GTCTC 2 cut(s) 80, 306
BstMBI GATC 2 cut(s) 45, 223
BstMWI GCNNNNNNNGC 3 cut(s) 364, 452, 562
BstNI CCWGG 1 cut(s) 180
BstSCI CCNGG 2 cut(s) 178, 349
BstSLI GKGCMC 1 cut(s) 270
BstV1I GCAGC 1 cut(s) 379
BstX2I RGATCY 1 cut(s) 223
BstYI RGATCY 1 cut(s) 223
BsuI GTATCC 1 cut(s) 10
BsuRI GGCC 1 cut(s) 354
BtgI CCRYGG 1 cut(s) 21
BtsCI GGATG 1 cut(s) 268
Cac8I GCNNGC 3 cut(s) 54, 356, 457
CciI TCATGA 1 cut(s) 513
CfoI GCGC 2 cut(s) 100, 556
Cfr13I GGNCC 1 cut(s) 352
Csp6I GTAC 1 cut(s) 538
CviAII CATG 3 cut(s) 172, 382, 514
CviJI RGCY 9 cut(s) 56, 68, 81, 183, 354, 392, 433, 446, 459
CviKI_1 RGCY 9 cut(s) 56, 68, 81, 183, 354, 392, 433, 446, 459
CviQI GTAC 1 cut(s) 538
DdeI CTNAG 1 cut(s) 429
DpnI GATC 2 cut(s) 47, 225
DpnII GATC 2 cut(s) 45, 223
Eco47III AGCGCT 1 cut(s) 555
Eco57I CTGAAG 1 cut(s) 345
EcoRII CCWGG 1 cut(s) 178
FaeI CATG 3 cut(s) 175, 385, 517
FatI CATG 3 cut(s) 171, 381, 513
FauNDI CATATG 1 cut(s) 213
Fnu4HI GCNGC 1 cut(s) 393
FokI GGATG 1 cut(s) 275
Fsp4HI GCNGC 1 cut(s) 393
FspBI CTAG 2 cut(s) 189, 566
GlaI GCGC 2 cut(s) 99, 555
GluI GCNGC 1 cut(s) 393
GsaI CCCAGC 2 cut(s) 399, 560
GsuI CTGGAG 1 cut(s) 306
HaeII RGCGCY 2 cut(s) 101, 557
HaeIII GGCC 1 cut(s) 354
HapII CCGG 1 cut(s) 350
HhaI GCGC 2 cut(s) 100, 556
Hin1II CATG 3 cut(s) 175, 385, 517
Hin6I GCGC 2 cut(s) 98, 554
HinP1I GCGC 2 cut(s) 98, 554
HindIII AAGCTT 1 cut(s) 444
HinfI GANTC 3 cut(s) 26, 140, 336
HpaII CCGG 1 cut(s) 350
HphI GGTGA 4 cut(s) 135, 206, 452, 514
Hpy166II GTNNAC 1 cut(s) 268
Hpy188I TCNGA 4 cut(s) 45, 166, 325, 430
Hpy188III TCNNGA 1 cut(s) 514
Hpy8I GTNNAC 1 cut(s) 268
Hpy99I CGWCG 1 cut(s) 580
HpyAV CCTTC 1 cut(s) 574
HpyCH4III ACNGT 2 cut(s) 22, 480
HpyCH4IV ACGT 4 cut(s) 258, 465, 492, 575
HpyCH4V TGCA 4 cut(s) 211, 236, 268, 367
HpyF10VI GCNNNNNNNGC 3 cut(s) 364, 452, 562
HpyF3I CTNAG 1 cut(s) 429
HpySE526I ACGT 4 cut(s) 258, 465, 492, 575
Hsp92II CATG 3 cut(s) 175, 385, 517
HspAI GCGC 2 cut(s) 98, 554
Kzo9I GATC 2 cut(s) 45, 223
LmnI GCTCC 2 cut(s) 352, 551
Lsp1109I GCAGC 1 cut(s) 379
MaeI CTAG 2 cut(s) 189, 566
MaeII ACGT 4 cut(s) 258, 465, 492, 575
MaeIII GTNAC 5 cut(s) 88, 141, 194, 461, 502
MalI GATC 2 cut(s) 47, 225
MbiI CCGCTC 1 cut(s) 274
MboI GATC 2 cut(s) 45, 223
MboII GAAGA 2 cut(s) 302, 338
MflI RGATCY 1 cut(s) 223
MhlI GDGCHC 2 cut(s) 162, 270
MluCI AATT 4 cut(s) 243, 319, 507, 531
MlyI GAGTC 1 cut(s) 149
MnlI CCTC 1 cut(s) 311
MseI TTAA 2 cut(s) 255, 534
MspI CCGG 1 cut(s) 350
MspR9I CCNGG 2 cut(s) 180, 351
MvaI CCWGG 1 cut(s) 180
MwoI GCNNNNNNNGC 3 cut(s) 364, 452, 562
NciI CCSGG 1 cut(s) 351
NdeI CATATG 1 cut(s) 213
NdeII GATC 2 cut(s) 45, 223
NlaIII CATG 3 cut(s) 175, 385, 517
NlaIV GGNNCC 2 cut(s) 177, 225
NmeAIII GCCGAG 1 cut(s) 57
NmuCI GTSAC 4 cut(s) 88, 141, 194, 502
PagI TCATGA 1 cut(s) 513
PcsI WCGNNNNNNNCGW 1 cut(s) 255
PfeI GAWTC 2 cut(s) 26, 336
PflMI CCANNNNNTGG 1 cut(s) 382
PkrI GCNGC 1 cut(s) 394
PleI GAGTC 1 cut(s) 148
PpsI GAGTC 1 cut(s) 148
Psp6I CCWGG 1 cut(s) 178
PspFI CCCAGC 2 cut(s) 395, 556
PspGI CCWGG 1 cut(s) 178
PspN4I GGNNCC 2 cut(s) 177, 225
PspPI GGNCC 1 cut(s) 352
PsuI RGATCY 1 cut(s) 223
RsaI GTAC 1 cut(s) 539
RsaNI GTAC 1 cut(s) 538
SaqAI TTAA 2 cut(s) 255, 534
SatI GCNGC 1 cut(s) 393
Sau3AI GATC 2 cut(s) 45, 223
Sau96I GGNCC 1 cut(s) 352
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 2 cut(s) 180, 351
SduI GDGCHC 2 cut(s) 162, 270
Sse9I AATT 4 cut(s) 243, 319, 507, 531
SsiI CCGC 1 cut(s) 274
SspMI CTAG 2 cut(s) 189, 566
StyD4I CCNGG 2 cut(s) 178, 349
TaaI ACNGT 2 cut(s) 22, 480
TaiI ACGT 4 cut(s) 261, 468, 495, 578
TaqI TCGA 1 cut(s) 578
TasI AATT 4 cut(s) 243, 319, 507, 531
TatI WGTACW 1 cut(s) 537
TfiI GAWTC 2 cut(s) 26, 336
Tru1I TTAA 2 cut(s) 255, 534
Tru9I TTAA 2 cut(s) 255, 534
TseFI GTSAC 4 cut(s) 88, 141, 194, 502
TseI GCWGC 1 cut(s) 392
Tsp45I GTSAC 4 cut(s) 88, 141, 194, 502
TspDTI ATGAA 1 cut(s) 486
Van91I CCANNNNNTGG 1 cut(s) 382
VneI GTGCAC 1 cut(s) 266
XspI CTAG 2 cut(s) 189, 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.