Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006835.1

Orthogroup ID

OG0009052

Physical Location & Seq

Genomic Coordinates Reverse (-)

46371 .. 48893

Gene Structure 2523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006835.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

atgggttggtttggggataccgtggattccatcaagtccattcagatcaggcaagctctctcccaagccgtcagtctcggcttgattgtcacttcggcgctgataatatggaaagggttgatgttgatgactgggagtgagtcacctgtggtggttgtgctctctgaaagcatggaacctggctttgctaggggtgacattttgttcttgcatatgagcaaggatcctattcgtgcaggagaaattgtcgtgtttaacgtggatggacgtactattccaattgttcatcgagtaattaaggtgcacgagcggaaagatactggagaagattatgtcctcacaaaaggagacaataattctgatgatgatagaatcctttatgctccgggccagcgttggttgcaaaaacaccatatcatggggagagctgctgggtttttgccttacgttggttgggtgacaattatcatgacagaaaagcctataattaagtacattatcataggagcgctgggattgctggtcattacgtcgaaggattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

Peptidase_S24

Protein Analysis

180

Amino Acids

19.94

Weight (kDa)

6.97

Isoelectric Point (pI)

29.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15710
fragaria_vesca	FvH4_1g03470
malus_domestica	MD02G1033800.v1.1 MD15G1174600.v1.1
prunus_persica	Prupe.7G241300_v2.0.a1 Prupe.7G241300_v2.0.a1 Prupe.7G241300_v2.0.a1 Prupe.7G241300_v2.0.a1 Prupe.7G241300_v2.0.a1
pyrus_communis	pycom02g02770
rosa_chinensis	RchiOBHm_Chr2g0088691
rosa_laevigata	RLG00000015976
rosa_multiflora	Rmu_sc0006835.1_g000010 Rmu_sc0015442.1_g000015
rosa_roxburghii	Rroxscaffold_2G00152400
rosa_rugosa	Rorug01G0485900 Rorug01G0485900
rosa_samantha	Rh2AG041400 Rh2BG040100 Rh2CG040900 Rh2DG040500
rosa_wichuraiana	Rw2G003300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	418
AccBSI	CCGCTC	1 cut(s)	310
AciI	CCGC	1 cut(s)	310
AclWI	GGATC	2 cut(s)	218, 231
AfaI	GTAC	2 cut(s)	271, 494
AfeI	AGCGCT	1 cut(s)	510
AfiI	CCNNNNNNNGG	2 cut(s)	418, 449
AjnI	CCWGG	1 cut(s)	178
AluBI	AGCT	2 cut(s)	56, 428
AluI	AGCT	2 cut(s)	56, 428
Alw21I	GWGCWC	2 cut(s)	162, 306
Alw26I	GTCTC	2 cut(s)	80, 342
Alw44I	GTGCAC	1 cut(s)	302
AlwI	GGATC	2 cut(s)	218, 231
Aor51HI	AGCGCT	1 cut(s)	510
AoxI	GGCC	1 cut(s)	388
ApaLI	GTGCAC	1 cut(s)	302
ApeKI	GCWGC	1 cut(s)	428
AspLEI	GCGC	2 cut(s)	100, 511
AspS9I	GGNCC	1 cut(s)	388
AsuC2I	CCSGG	1 cut(s)	387
AsuHPI	GGTGA	3 cut(s)	135, 206, 469
BaeGI	GKGCMC	1 cut(s)	306
BamHI	GGATCC	1 cut(s)	223
BauI	CACGAG	1 cut(s)	305
Bbv12I	GWGCWC	2 cut(s)	162, 306
BbvI	GCAGC	1 cut(s)	415
BccI	CCATC	2 cut(s)	38, 257
BceAI	ACGGC	1 cut(s)	53
BciT130I	CCWGG	1 cut(s)	180
BciVI	GTATCC	1 cut(s)	10
BcnI	CCSGG	1 cut(s)	387
BcoDI	GTCTC	2 cut(s)	80, 342
BfaI	CTAG	1 cut(s)	189
BfoI	RGCGCY	2 cut(s)	101, 512
BfuI	GTATCC	1 cut(s)	10
BisI	GCNGC	1 cut(s)	429
BlsI	GCNGC	1 cut(s)	430
Bme1390I	CCNGG	2 cut(s)	180, 387
BmgT120I	GGNCC	1 cut(s)	388
BmiI	GGNNCC	2 cut(s)	177, 225
BmrFI	CCNGG	2 cut(s)	180, 387
BmrI	ACTGGG	1 cut(s)	141
BmuI	ACTGGG	1 cut(s)	141
BpmI	CTGGAG	1 cut(s)	342
BpuMI	CCSGG	1 cut(s)	387
BsaJI	CCNNGG	1 cut(s)	21
BsaXI	ACNNNNNCTCC	2 cut(s)	231, 261
Bsc4I	CCNNNNNNNGG	2 cut(s)	418, 449
Bse1I	ACTGG	2 cut(s)	136, 325
BseBI	CCWGG	1 cut(s)	180
BseDI	CCNNGG	1 cut(s)	21
BseGI	GGATG	1 cut(s)	268
BseLI	CCNNNNNNNGG	2 cut(s)	418, 449
BseNI	ACTGG	2 cut(s)	136, 325
BseSI	GKGCMC	1 cut(s)	306
BseXI	GCAGC	1 cut(s)	415
BseYI	CCCAGC	2 cut(s)	431, 511
BsgI	GTGCAG	1 cut(s)	255
BshFI	GGCC	1 cut(s)	390
BsiHKAI	GWGCWC	2 cut(s)	162, 306
BsiSI	CCGG	1 cut(s)	386
BslI	CCNNNNNNNGG	2 cut(s)	418, 449
BsmAI	GTCTC	2 cut(s)	80, 342
BsnI	GGCC	1 cut(s)	390
Bsp1286I	GDGCHC	2 cut(s)	162, 306
Bsp143I	GATC	2 cut(s)	45, 223
BspACI	CCGC	1 cut(s)	310
BspANI	GGCC	1 cut(s)	390
BspHI	TCATGA	1 cut(s)	468
BspLI	GGNNCC	2 cut(s)	177, 225
BspPI	GGATC	2 cut(s)	218, 231
BsrBI	CCGCTC	1 cut(s)	310
BsrI	ACTGG	2 cut(s)	136, 325
BssECI	CCNNGG	1 cut(s)	21
BssMI	GATC	2 cut(s)	45, 223
BssSI	CACGAG	1 cut(s)	305
Bst2BI	CACGAG	1 cut(s)	305
Bst2UI	CCWGG	1 cut(s)	180
Bst4CI	ACNGT	1 cut(s)	22
BstC8I	GCNNGC	2 cut(s)	54, 392
BstDSI	CCRYGG	1 cut(s)	21
BstF5I	GGATG	1 cut(s)	268
BstH2I	RGCGCY	2 cut(s)	101, 512
BstHHI	GCGC	2 cut(s)	100, 511
BstKTI	GATC	2 cut(s)	48, 226
BstMAI	GTCTC	2 cut(s)	80, 342
BstMBI	GATC	2 cut(s)	45, 223
BstMWI	GCNNNNNNNGC	2 cut(s)	400, 517
BstNI	CCWGG	1 cut(s)	180
BstSCI	CCNGG	2 cut(s)	178, 385
BstSLI	GKGCMC	1 cut(s)	306
BstV1I	GCAGC	1 cut(s)	415
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
BsuI	GTATCC	1 cut(s)	10
BsuRI	GGCC	1 cut(s)	390
BtgI	CCRYGG	1 cut(s)	21
BtsCI	GGATG	1 cut(s)	268
Cac8I	GCNNGC	2 cut(s)	54, 392
CciI	TCATGA	1 cut(s)	468
CfoI	GCGC	2 cut(s)	100, 511
Cfr13I	GGNCC	1 cut(s)	388
Csp6I	GTAC	2 cut(s)	270, 493
CviAII	CATG	3 cut(s)	172, 418, 469
CviJI	RGCY	7 cut(s)	56, 68, 81, 183, 390, 428, 481
CviKI_1	RGCY	7 cut(s)	56, 68, 81, 183, 390, 428, 481
CviQI	GTAC	2 cut(s)	270, 493
DpnI	GATC	2 cut(s)	47, 225
DpnII	GATC	2 cut(s)	45, 223
Eco47III	AGCGCT	1 cut(s)	510
EcoRII	CCWGG	1 cut(s)	178
FaeI	CATG	3 cut(s)	175, 421, 472
FatI	CATG	3 cut(s)	171, 417, 468
FauNDI	CATATG	1 cut(s)	213
Fnu4HI	GCNGC	1 cut(s)	429
FokI	GGATG	1 cut(s)	275
Fsp4HI	GCNGC	1 cut(s)	429
FspBI	CTAG	1 cut(s)	189
GlaI	GCGC	2 cut(s)	99, 510
GluI	GCNGC	1 cut(s)	429
GsaI	CCCAGC	2 cut(s)	435, 515
GsuI	CTGGAG	1 cut(s)	342
HaeII	RGCGCY	2 cut(s)	101, 512
HaeIII	GGCC	1 cut(s)	390
HapII	CCGG	1 cut(s)	386
HhaI	GCGC	2 cut(s)	100, 511
Hin1II	CATG	3 cut(s)	175, 421, 472
Hin6I	GCGC	2 cut(s)	98, 509
HinP1I	GCGC	2 cut(s)	98, 509
HinfI	GANTC	3 cut(s)	26, 140, 372
HpaII	CCGG	1 cut(s)	386
HphI	GGTGA	3 cut(s)	135, 206, 469
Hpy166II	GTNNAC	1 cut(s)	304
Hpy188I	TCNGA	3 cut(s)	45, 166, 361
Hpy188III	TCNNGA	1 cut(s)	469
Hpy8I	GTNNAC	1 cut(s)	304
Hpy99I	CGWCG	1 cut(s)	535
HpyAV	CCTTC	1 cut(s)	529
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4IV	ACGT	4 cut(s)	258, 268, 447, 530
HpyCH4V	TGCA	4 cut(s)	211, 236, 304, 403
HpyF10VI	GCNNNNNNNGC	2 cut(s)	400, 517
HpySE526I	ACGT	4 cut(s)	258, 268, 447, 530
Hsp92II	CATG	3 cut(s)	175, 421, 472
HspAI	GCGC	2 cut(s)	98, 509
Kzo9I	GATC	2 cut(s)	45, 223
LmnI	GCTCC	2 cut(s)	388, 506
Lsp1109I	GCAGC	1 cut(s)	415
MaeI	CTAG	1 cut(s)	189
MaeII	ACGT	4 cut(s)	258, 268, 447, 530
MaeIII	GTNAC	4 cut(s)	88, 141, 194, 457
MalI	GATC	2 cut(s)	47, 225
MbiI	CCGCTC	1 cut(s)	310
MboI	GATC	2 cut(s)	45, 223
MboII	GAAGA	1 cut(s)	338
MfeI	CAATTG	1 cut(s)	279
MflI	RGATCY	1 cut(s)	223
MhlI	GDGCHC	2 cut(s)	162, 306
MluCI	AATT	6 cut(s)	243, 279, 294, 355, 462, 486
MlyI	GAGTC	1 cut(s)	149
MnlI	CCTC	1 cut(s)	347
MseI	TTAA	3 cut(s)	255, 297, 489
MspI	CCGG	1 cut(s)	386
MspR9I	CCNGG	2 cut(s)	180, 387
MunI	CAATTG	1 cut(s)	279
MvaI	CCWGG	1 cut(s)	180
MwoI	GCNNNNNNNGC	2 cut(s)	400, 517
NciI	CCSGG	1 cut(s)	387
NdeI	CATATG	1 cut(s)	213
NdeII	GATC	2 cut(s)	45, 223
NlaIII	CATG	3 cut(s)	175, 421, 472
NlaIV	GGNNCC	2 cut(s)	177, 225
NmeAIII	GCCGAG	1 cut(s)	57
NmuCI	GTSAC	4 cut(s)	88, 141, 194, 457
PagI	TCATGA	1 cut(s)	468
PcsI	WCGNNNNNNNCGW	1 cut(s)	255
PfeI	GAWTC	2 cut(s)	26, 372
PflMI	CCANNNNNTGG	1 cut(s)	418
PkrI	GCNGC	1 cut(s)	430
PleI	GAGTC	1 cut(s)	148
PpsI	GAGTC	1 cut(s)	148
Psp6I	CCWGG	1 cut(s)	178
PspFI	CCCAGC	2 cut(s)	431, 511
PspGI	CCWGG	1 cut(s)	178
PspN4I	GGNNCC	2 cut(s)	177, 225
PspPI	GGNCC	1 cut(s)	388
PsuI	RGATCY	1 cut(s)	223
RsaI	GTAC	2 cut(s)	271, 494
RsaNI	GTAC	2 cut(s)	270, 493
SaqAI	TTAA	3 cut(s)	255, 297, 489
SatI	GCNGC	1 cut(s)	429
Sau3AI	GATC	2 cut(s)	45, 223
Sau96I	GGNCC	1 cut(s)	388
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	2 cut(s)	180, 387
SduI	GDGCHC	2 cut(s)	162, 306
SetI	ASST	9 cut(s)	58, 148, 181, 261, 271, 303, 430, 450, 533
Sse9I	AATT	6 cut(s)	243, 279, 294, 355, 462, 486
SsiI	CCGC	1 cut(s)	310
SspMI	CTAG	1 cut(s)	189
StyD4I	CCNGG	2 cut(s)	178, 385
TaaI	ACNGT	1 cut(s)	22
TaiI	ACGT	4 cut(s)	261, 271, 450, 533
TaqI	TCGA	2 cut(s)	289, 533
TasI	AATT	6 cut(s)	243, 279, 294, 355, 462, 486
TatI	WGTACW	1 cut(s)	492
TfiI	GAWTC	2 cut(s)	26, 372
Tru1I	TTAA	3 cut(s)	255, 297, 489
Tru9I	TTAA	3 cut(s)	255, 297, 489
TseFI	GTSAC	4 cut(s)	88, 141, 194, 457
TseI	GCWGC	1 cut(s)	428
Tsp45I	GTSAC	4 cut(s)	88, 141, 194, 457
TspDTI	ATGAA	1 cut(s)	275
Van91I	CCANNNNNTGG	1 cut(s)	418
VneI	GTGCAC	1 cut(s)	302
XspI	CTAG	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.