FvH4_1g03470

Signal peptidase complex catalytic subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0009052
Physical Location & Seq
Forward (+)
1904304 .. 1907142
2839 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g03470.t1

Sequence Viewer

Length: 543 bp
ATGGGTTGGTTCGGGGACACCGTGGACTCCATAAAGTCCATTCAGATCAGGCAAGCTCTCACCCAAGCCATCAATTTCGGCTTGATTGTCACTTCGGCGCTGATAATATGGAAAGGGCTGATGTTGGTGACTGGGAGTGAATCACCTGTGGTGGTTGTGCTCTCTGAAAGCATGGAACCTGGGTTTGCTAGGGGTGACATTTTGTTCCTGCATATGAACAAGGATCCTATTCGTGCAGGAGAAATTGTGGTGTTTAACGTGGATGGACGTCCAATTCCAATTGTTCATCGAGTAATTAAGGTTCATGAGCGGAGAGACACTGGAGAAGATTATGTCCTCACAAAAGGGGACAATAATCCTGATGATGATAGAATCCTTTATGCTCCAGGCCAGCGTTGGTTGCAAAGACACCATATCATGGGGAAAGCTGCCGGGTTTTTGCCTTATGTTGGCTGGGTGACAATTATCATGACAGAAAAGCCTATAATCAAGTACATTATCATAGGAGCGCTGGGATTGTTGGTCATTACCTCGAAGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03060 map03060
Pfam Domains
Protein Families
Peptidase_S24

Protein Analysis

181

Amino Acids

20.06

Weight (kDa)

6.98

Isoelectric Point (pI)

29.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S24 PF00717 37 - 102 2.3e-09 Peptidase S24-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 271
AccB7I CCANNNNNTGG 1 cut(s) 418
AccBSI CCGCTC 1 cut(s) 310
AciI CCGC 1 cut(s) 310
AclWI GGATC 2 cut(s) 218, 231
AcyI GRCGYC 1 cut(s) 268
AfaI GTAC 1 cut(s) 494
AfeI AGCGCT 1 cut(s) 510
AfiI CCNNNNNNNGG 2 cut(s) 418, 449
AjnI CCWGG 2 cut(s) 178, 385
AluBI AGCT 2 cut(s) 56, 428
AluI AGCT 2 cut(s) 56, 428
Alw21I GWGCWC 1 cut(s) 162
Alw26I GTCTC 1 cut(s) 309
AlwI GGATC 2 cut(s) 218, 231
Aor51HI AGCGCT 1 cut(s) 510
AoxI GGCC 1 cut(s) 388
ApeKI GCWGC 1 cut(s) 428
AspLEI GCGC 2 cut(s) 100, 511
AsuC2I CCSGG 1 cut(s) 433
AsuHPI GGTGA 5 cut(s) 52, 135, 139, 206, 469
BamHI GGATCC 1 cut(s) 223
Bbv12I GWGCWC 1 cut(s) 162
BbvI GCAGC 1 cut(s) 415
BccI CCATC 2 cut(s) 77, 257
BciT130I CCWGG 2 cut(s) 180, 387
BcnI CCSGG 1 cut(s) 433
BcoDI GTCTC 1 cut(s) 309
BfaI CTAG 1 cut(s) 189
BfoI RGCGCY 2 cut(s) 101, 512
BisI GCNGC 1 cut(s) 429
BlsI GCNGC 1 cut(s) 430
Bme1390I CCNGG 3 cut(s) 180, 387, 433
BmiI GGNNCC 2 cut(s) 177, 225
BmrFI CCNGG 3 cut(s) 180, 387, 433
BmrI ACTGGG 1 cut(s) 141
BmuI ACTGGG 1 cut(s) 141
BpmI CTGGAG 2 cut(s) 342, 369
BpuMI CCSGG 1 cut(s) 433
BsaHI GRCGYC 1 cut(s) 268
BsaJI CCNNGG 2 cut(s) 21, 179
BsaXI ACNNNNNCTCC 2 cut(s) 231, 261
Bsc4I CCNNNNNNNGG 2 cut(s) 418, 449
Bse1I ACTGG 2 cut(s) 136, 325
BseBI CCWGG 2 cut(s) 180, 387
BseDI CCNNGG 2 cut(s) 21, 179
BseGI GGATG 1 cut(s) 268
BseLI CCNNNNNNNGG 2 cut(s) 418, 449
BseNI ACTGG 2 cut(s) 136, 325
BseXI GCAGC 1 cut(s) 415
BseYI CCCAGC 2 cut(s) 453, 511
BsgI GTGCAG 1 cut(s) 255
BshFI GGCC 1 cut(s) 390
BsiHKAI GWGCWC 1 cut(s) 162
BsiSI CCGG 1 cut(s) 432
BslFI GGGAC 2 cut(s) 29, 362
BslI CCNNNNNNNGG 2 cut(s) 418, 449
BsmAI GTCTC 1 cut(s) 309
BsmFI GGGAC 2 cut(s) 29, 362
BsnI GGCC 1 cut(s) 390
Bsp1286I GDGCHC 1 cut(s) 162
Bsp143I GATC 2 cut(s) 45, 223
BspACI CCGC 1 cut(s) 310
BspANI GGCC 1 cut(s) 390
BspHI TCATGA 2 cut(s) 304, 468
BspLI GGNNCC 2 cut(s) 177, 225
BspPI GGATC 2 cut(s) 218, 231
BsrBI CCGCTC 1 cut(s) 310
BsrI ACTGG 2 cut(s) 136, 325
BssECI CCNNGG 2 cut(s) 21, 179
BssMI GATC 2 cut(s) 45, 223
BssNI GRCGYC 1 cut(s) 268
Bst2UI CCWGG 2 cut(s) 180, 387
Bst4CI ACNGT 1 cut(s) 22
BstACI GRCGYC 1 cut(s) 268
BstC8I GCNNGC 2 cut(s) 54, 392
BstDSI CCRYGG 1 cut(s) 21
BstF5I GGATG 1 cut(s) 268
BstH2I RGCGCY 2 cut(s) 101, 512
BstHHI GCGC 2 cut(s) 100, 511
BstKTI GATC 2 cut(s) 48, 226
BstMAI GTCTC 1 cut(s) 309
BstMBI GATC 2 cut(s) 45, 223
BstMWI GCNNNNNNNGC 1 cut(s) 400
BstNI CCWGG 2 cut(s) 180, 387
BstSCI CCNGG 3 cut(s) 178, 385, 431
BstV1I GCAGC 1 cut(s) 415
BstX2I RGATCY 1 cut(s) 223
BstYI RGATCY 1 cut(s) 223
BsuRI GGCC 1 cut(s) 390
BtgI CCRYGG 1 cut(s) 21
BtsCI GGATG 1 cut(s) 268
BtsIMutI CAGTG 1 cut(s) 318
Cac8I GCNNGC 2 cut(s) 54, 392
CciI TCATGA 2 cut(s) 304, 468
CfoI GCGC 2 cut(s) 100, 511
Csp6I GTAC 1 cut(s) 493
CviAII CATG 4 cut(s) 172, 305, 418, 469
CviJI RGCY 8 cut(s) 56, 68, 81, 118, 390, 428, 453, 481
CviKI_1 RGCY 8 cut(s) 56, 68, 81, 118, 390, 428, 453, 481
CviQI GTAC 1 cut(s) 493
DpnI GATC 2 cut(s) 47, 225
DpnII GATC 2 cut(s) 45, 223
Eco47III AGCGCT 1 cut(s) 510
EcoRII CCWGG 2 cut(s) 178, 385
FaeI CATG 4 cut(s) 175, 308, 421, 472
FaqI GGGAC 2 cut(s) 29, 362
FatI CATG 4 cut(s) 171, 304, 417, 468
FauNDI CATATG 1 cut(s) 213
Fnu4HI GCNGC 1 cut(s) 429
FokI GGATG 1 cut(s) 275
Fsp4HI GCNGC 1 cut(s) 429
FspBI CTAG 1 cut(s) 189
GlaI GCGC 2 cut(s) 99, 510
GluI GCNGC 1 cut(s) 429
GsaI CCCAGC 2 cut(s) 457, 515
GsuI CTGGAG 2 cut(s) 342, 369
HaeII RGCGCY 2 cut(s) 101, 512
HaeIII GGCC 1 cut(s) 390
HapII CCGG 1 cut(s) 432
HhaI GCGC 2 cut(s) 100, 511
Hin1I GRCGYC 1 cut(s) 268
Hin1II CATG 4 cut(s) 175, 308, 421, 472
Hin6I GCGC 2 cut(s) 98, 509
HinP1I GCGC 2 cut(s) 98, 509
HinfI GANTC 3 cut(s) 26, 140, 372
HpaII CCGG 1 cut(s) 432
HphI GGTGA 5 cut(s) 52, 135, 139, 206, 469
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 2 cut(s) 45, 166
Hpy188III TCNNGA 3 cut(s) 305, 359, 469
Hpy8I GTNNAC 1 cut(s) 25
HpyAV CCTTC 1 cut(s) 529
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4IV ACGT 2 cut(s) 258, 268
HpyCH4V TGCA 3 cut(s) 211, 236, 403
HpyF10VI GCNNNNNNNGC 1 cut(s) 400
HpySE526I ACGT 2 cut(s) 258, 268
Hsp92I GRCGYC 1 cut(s) 268
Hsp92II CATG 4 cut(s) 175, 308, 421, 472
HspAI GCGC 2 cut(s) 98, 509
Kzo9I GATC 2 cut(s) 45, 223
LmnI GCTCC 2 cut(s) 388, 506
Lsp1109I GCAGC 1 cut(s) 415
MaeI CTAG 1 cut(s) 189
MaeII ACGT 2 cut(s) 258, 268
MaeIII GTNAC 4 cut(s) 88, 127, 194, 457
MalI GATC 2 cut(s) 47, 225
MbiI CCGCTC 1 cut(s) 310
MboI GATC 2 cut(s) 45, 223
MboII GAAGA 1 cut(s) 338
MfeI CAATTG 1 cut(s) 279
MflI RGATCY 1 cut(s) 223
MhlI GDGCHC 1 cut(s) 162
MluCI AATT 6 cut(s) 73, 243, 273, 279, 294, 462
MlyI GAGTC 1 cut(s) 20
MnlI CCTC 2 cut(s) 347, 541
MseI TTAA 2 cut(s) 255, 297
MspI CCGG 1 cut(s) 432
MspR9I CCNGG 3 cut(s) 180, 387, 433
MunI CAATTG 1 cut(s) 279
MvaI CCWGG 2 cut(s) 180, 387
MwoI GCNNNNNNNGC 1 cut(s) 400
NciI CCSGG 1 cut(s) 433
NdeI CATATG 1 cut(s) 213
NdeII GATC 2 cut(s) 45, 223
NlaIII CATG 4 cut(s) 175, 308, 421, 472
NlaIV GGNNCC 2 cut(s) 177, 225
NmuCI GTSAC 4 cut(s) 88, 127, 194, 457
PagI TCATGA 2 cut(s) 304, 468
PcsI WCGNNNNNNNCGW 1 cut(s) 18
PfeI GAWTC 2 cut(s) 140, 372
PflMI CCANNNNNTGG 1 cut(s) 418
PkrI GCNGC 1 cut(s) 430
PleI GAGTC 1 cut(s) 20
PpsI GAGTC 1 cut(s) 20
Psp6I CCWGG 2 cut(s) 178, 385
PspFI CCCAGC 2 cut(s) 453, 511
PspGI CCWGG 2 cut(s) 178, 385
PspN4I GGNNCC 2 cut(s) 177, 225
PsrI GAACNNNNNNTAC 2 cut(s) 285, 317
PsuI RGATCY 1 cut(s) 223
RsaI GTAC 1 cut(s) 494
RsaNI GTAC 1 cut(s) 493
SaqAI TTAA 2 cut(s) 255, 297
SatI GCNGC 1 cut(s) 429
Sau3AI GATC 2 cut(s) 45, 223
SchI GAGTC 1 cut(s) 20
ScrFI CCNGG 3 cut(s) 180, 387, 433
SduI GDGCHC 1 cut(s) 162
SetI ASST 8 cut(s) 58, 148, 181, 261, 271, 303, 430, 533
Sse9I AATT 6 cut(s) 73, 243, 273, 279, 294, 462
SsiI CCGC 1 cut(s) 310
SspMI CTAG 1 cut(s) 189
StyD4I CCNGG 3 cut(s) 178, 385, 431
TaaI ACNGT 1 cut(s) 22
TaiI ACGT 2 cut(s) 261, 271
TaqI TCGA 2 cut(s) 289, 533
TasI AATT 6 cut(s) 73, 243, 273, 279, 294, 462
TatI WGTACW 1 cut(s) 492
TfiI GAWTC 2 cut(s) 140, 372
Tru1I TTAA 2 cut(s) 255, 297
Tru9I TTAA 2 cut(s) 255, 297
TscAI CASTG 1 cut(s) 325
TseFI GTSAC 4 cut(s) 88, 127, 194, 457
TseI GCWGC 1 cut(s) 428
Tsp45I GTSAC 4 cut(s) 88, 127, 194, 457
TspDTI ATGAA 3 cut(s) 230, 275, 293
TspRI CASTG 1 cut(s) 325
Van91I CCANNNNNTGG 1 cut(s) 418
XcmI CCANNNNNNNNNTGG 1 cut(s) 393
XspI CTAG 1 cut(s) 189
ZraI GACGTC 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.